RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 PLAGL2Q9UPG8 496 aa12.66□□□□□ -0.38
SHMT2-201ENST00000328923 DOLKQ9UPQ8 538 aa12.66□□□□□ -0.38
SHMT2-201ENST00000328923 VILLO15195 856 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 ADCY3O60266 1144 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 T-ENOLP0DO92 83 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 HSPA8P11142 646 aaKnown RBP12.65□□□□□ -0.38
SHMT2-201ENST00000328923 LONP1P36776 959 aaKnown RBP12.65□□□□□ -0.38
SHMT2-201ENST00000328923 MAGEA1P43355 309 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 SERPINB8P50452 374 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 EHHADHQ08426 723 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 PTGDRQ13258 359 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 CCDC153Q494R4 210 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 EARS2Q5JPH6 523 aaKnown RBP12.65□□□□□ -0.38
SHMT2-201ENST00000328923 UBAP2Q5T6F2 1119 aaKnown RBP12.65□□□□□ -0.38
SHMT2-201ENST00000328923 TTI2Q6NXR4 508 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 C2CD5Q86YS7 1000 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 DDX12PQ92771 950 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 TUBGCP2Q9BSJ2 902 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 RNF41Q9H4P4 317 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-201ENST00000328923 SYNCQ9H7C4 482 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 TRPC7Q9HCX4 862 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 NOX1Q9Y5S8 564 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 WASF2Q9Y6W5 498 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 ZNF831Q5JPB2 1677 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 BHMG1C9JSJ3 638 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-201ENST00000328923 ATP5HO75947 161 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 MARK3P27448 753 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 PPP1R2P41236 205 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 TUFMP49411 452 aaKnown RBP12.65□□□□□ -0.38
SHMT2-201ENST00000328923 TMED10P49755 219 aaKnown RBP12.65□□□□□ -0.38
SHMT2-201ENST00000328923 LRP8Q14114 963 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 IZUMO2Q6UXV1 221 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 PATL1Q86TB9 770 aaKnown RBP12.65□□□□□ -0.38
SHMT2-201ENST00000328923 ZBED8Q8IZ13 594 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 SCAIQ8N9R8 606 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 MAELQ96JY0 434 aaKnown RBP12.65□□□□□ -0.38
SHMT2-201ENST00000328923 TRIM47Q96LD4 638 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 NAP1L3Q99457 506 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-201ENST00000328923 CCT7Q99832 543 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 SLC7A5P2Q9GIP4 190 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 GBA3Q9H227 469 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 USP29Q9HBJ7 922 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 TACC3Q9Y6A5 838 aa12.65□□□□□ -0.38
SHMT2-201ENST00000328923 FAM196BA6NMK8 535 aa12.64□□□□□ -0.39
SHMT2-201ENST00000328923 PDE8AO60658 829 aa12.64□□□□□ -0.39
SHMT2-201ENST00000328923 IDH1O75874 414 aaKnown RBP12.64□□□□□ -0.39
SHMT2-201ENST00000328923 RHOBTB3O94955 611 aa12.64□□□□□ -0.39
SHMT2-201ENST00000328923 UQCRFS1P1P0C7P4 283 aa12.64□□□□□ -0.39
SHMT2-201ENST00000328923 NAA20P61599 178 aa12.64□□□□□ -0.39
SHMT2-201ENST00000328923 FAM209AQ5JX71 171 aa12.64□□□□□ -0.39
SHMT2-201ENST00000328923 Q6ZNX1 250 aa12.64□□□□□ -0.39
SHMT2-201ENST00000328923 RBM44Q6ZP01 1051 aaKnown RBP12.64□□□□□ -0.39
SHMT2-201ENST00000328923 FAM186BQ8IYM0 893 aa12.64□□□□□ -0.39
SHMT2-201ENST00000328923 GIMAP8Q8ND71 665 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-201ENST00000328923 EPS8L3Q8TE67 593 aaKnown RBP12.64□□□□□ -0.39
SHMT2-201ENST00000328923 ARHGEF2Q92974 986 aaKnown RBP12.64□□□□□ -0.39
SHMT2-201ENST00000328923 TRIM31Q9BZY9 425 aa12.64□□□□□ -0.39
SHMT2-201ENST00000328923 TCP11L1Q9NUJ3 509 aa12.64□□□□□ -0.39
SHMT2-201ENST00000328923 COL5A3P25940 1745 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-201ENST00000328923 DLEC1Q9Y238 1755 aa12.64□□□□□ -0.39
SHMT2-201ENST00000328923 BTAF1O14981 1849 aa12.64□□□□□ -0.39
SHMT2-201ENST00000328923 SMIM31A0A1B0GVY4 71 aa12.64□□□□□ -0.39
SHMT2-201ENST00000328923 BICDL2A1A5D9 508 aa12.64□□□□□ -0.39
SHMT2-201ENST00000328923 PSMG1O95456 288 aa12.64□□□□□ -0.39
SHMT2-201ENST00000328923 SLC1A4P43007 532 aa12.64□□□□□ -0.39
SHMT2-201ENST00000328923 CCT8P50990 548 aa12.64□□□□□ -0.39
SHMT2-201ENST00000328923 LMNB2Q03252 620 aa12.64□□□□□ -0.39
SHMT2-201ENST00000328923 FUT2Q10981 343 aa12.64□□□□□ -0.39
SHMT2-201ENST00000328923 PPP2R5CQ13362 524 aa12.64□□□□□ -0.39
SHMT2-201ENST00000328923 ZNF174Q15697 407 aa12.64□□□□□ -0.39
SHMT2-201ENST00000328923 DGCR14Q96DF8 476 aaKnown RBP12.64□□□□□ -0.39
SHMT2-201ENST00000328923 EEF2KMTQ96G04 330 aa12.64□□□□□ -0.39
SHMT2-201ENST00000328923 TXLNGYQ9BZA5 131 aa12.64□□□□□ -0.39
SHMT2-201ENST00000328923 TIMMDC1Q9NPL8 285 aa12.64□□□□□ -0.39
SHMT2-201ENST00000328923 SELENONQ9NZV5 590 aa12.64□□□□□ -0.39
SHMT2-201ENST00000328923 AMACRQ9UHK6 382 aa12.64□□□□□ -0.39
SHMT2-201ENST00000328923 DBR1Q9UK59 544 aaKnown RBP12.64□□□□□ -0.39
SHMT2-201ENST00000328923 CHKBQ9Y259 395 aa12.64□□□□□ -0.39
SHMT2-201ENST00000328923 TRIM17Q9Y577 477 aa12.64□□□□□ -0.39
SHMT2-201ENST00000328923 UMODL1Q5DID0 1318 aa12.64□□□□□ -0.39
SHMT2-201ENST00000328923 CCDC169A6NNP5 214 aa12.63□□□□□ -0.39
SHMT2-201ENST00000328923 WNT7AO00755 349 aa12.63□□□□□ -0.39
SHMT2-201ENST00000328923 ZNF862O60290 1169 aa12.63□□□□□ -0.39
SHMT2-201ENST00000328923 AGTP01019 485 aa12.63□□□□□ -0.39
SHMT2-201ENST00000328923 PMS1P54277 932 aaKnown RBP12.63□□□□□ -0.39
SHMT2-201ENST00000328923 PSMC1P62191 440 aaKnown RBP12.63□□□□□ -0.39
SHMT2-201ENST00000328923 GFPT1Q06210 699 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-201ENST00000328923 METTL21CQ5VZV1 264 aa12.63□□□□□ -0.39
SHMT2-201ENST00000328923 LDHAL6AQ6ZMR3 332 aa12.63□□□□□ -0.39
SHMT2-201ENST00000328923 ANKRD42Q8N9B4 389 aa12.63□□□□□ -0.39
SHMT2-201ENST00000328923 PRPF31Q8WWY3 499 aaKnown RBP12.63□□□□□ -0.39
SHMT2-201ENST00000328923 SPATA17Q96L03 361 aa12.63□□□□□ -0.39
SHMT2-201ENST00000328923 CGREF1Q99674 301 aa12.63□□□□□ -0.39
SHMT2-201ENST00000328923 MIPEPQ99797 713 aa12.63□□□□□ -0.39
SHMT2-201ENST00000328923 CELF4Q9BZC1 486 aaKnown RBP12.63□□□□□ -0.39
SHMT2-201ENST00000328923 SAP30BPQ9UHR5 308 aaKnown RBP12.63□□□□□ -0.39
SHMT2-201ENST00000328923 CCPG1Q9ULG6 757 aa12.63□□□□□ -0.39
SHMT2-201ENST00000328923 STX8Q9UNK0 236 aa12.63□□□□□ -0.39
SHMT2-201ENST00000328923 CARD8Q9Y2G2 431 aa12.63□□□□□ -0.39
SHMT2-201ENST00000328923 PNPLA7Q6ZV29 1317 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms