RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 ATP8B3O60423 1300 aa26.22■■□□□ 1.79
SPTSSA-201ENST00000298130 SYNGAP1Q96PV0 1343 aa26.22■■□□□ 1.79
SPTSSA-201ENST00000298130 FAM187AA6NFU0 413 aa26.22■■□□□ 1.79
SPTSSA-201ENST00000298130 H0YIN7 160 aa26.22■■□□□ 1.79
SPTSSA-201ENST00000298130 KRT27Q7Z3Y8 459 aa26.22■■□□□ 1.79
SPTSSA-201ENST00000298130 PWWP2AQ96N64 755 aa26.22■■□□□ 1.79
SPTSSA-201ENST00000298130 UBE4BO95155 1302 aa26.21■■□□□ 1.79
SPTSSA-201ENST00000298130 ATXN2Q99700 1313 aaKnown RBP26.21■■□□□ 1.79
SPTSSA-201ENST00000298130 RTN2O75298 545 aa26.21■■□□□ 1.79
SPTSSA-201ENST00000298130 MYCLP12524 364 aaPredicted RBP26.21■■□□□ 1.79
SPTSSA-201ENST00000298130 VPS41P49754 854 aa26.21■■□□□ 1.79
SPTSSA-201ENST00000298130 FMO1Q01740 532 aa26.21■■□□□ 1.79
SPTSSA-201ENST00000298130 ERMARDQ5T6L9 678 aa26.21■■□□□ 1.79
SPTSSA-201ENST00000298130 HOOK3Q86VS8 718 aa26.21■■□□□ 1.79
SPTSSA-201ENST00000298130 DHX37Q8IY37 1157 aaKnown RBP26.21■■□□□ 1.79
SPTSSA-201ENST00000298130 CHMP6Q96FZ7 201 aa26.21■■□□□ 1.79
SPTSSA-201ENST00000298130 DHX15O43143 795 aaKnown RBP26.21■■□□□ 1.79
SPTSSA-201ENST00000298130 ACSL3O95573 720 aa26.21■■□□□ 1.79
SPTSSA-201ENST00000298130 ALAS1P13196 640 aa26.21■■□□□ 1.79
SPTSSA-201ENST00000298130 CREB1P16220 341 aa26.21■■□□□ 1.79
SPTSSA-201ENST00000298130 RASA3Q14644 834 aa26.21■■□□□ 1.79
SPTSSA-201ENST00000298130 ANKRD20A8PQ5CZ79 823 aa26.21■■□□□ 1.79
SPTSSA-201ENST00000298130 COL11A2P13942 1736 aaPredicted RBP26.21■■□□□ 1.79
SPTSSA-201ENST00000298130 ATP9AO75110 1047 aa26.2■■□□□ 1.79
SPTSSA-201ENST00000298130 ADSSP30520 456 aa26.2■■□□□ 1.79
SPTSSA-201ENST00000298130 CHRNA3P32297 505 aa26.2■■□□□ 1.79
SPTSSA-201ENST00000298130 LONRF1Q17RB8 773 aa26.2■■□□□ 1.79
SPTSSA-201ENST00000298130 KLC4Q9NSK0 619 aa26.2■■□□□ 1.79
SPTSSA-201ENST00000298130 TMOD2Q9NZR1 351 aa26.2■■□□□ 1.79
SPTSSA-201ENST00000298130 PCDHA3Q9Y5H8 950 aa26.2■■□□□ 1.79
SPTSSA-201ENST00000298130 C21orf2O43822 256 aa26.2■■□□□ 1.78
SPTSSA-201ENST00000298130 P4HBP07237 508 aaKnown RBP26.2■■□□□ 1.78
SPTSSA-201ENST00000298130 PLS3P13797 630 aa26.2■■□□□ 1.78
SPTSSA-201ENST00000298130 YWHABP31946 246 aaKnown RBP26.2■■□□□ 1.78
SPTSSA-201ENST00000298130 EIF3BP55884 814 aaKnown RBP26.2■■□□□ 1.78
SPTSSA-201ENST00000298130 LMBRD2Q68DH5 695 aaPredicted RBP26.2■■□□□ 1.78
SPTSSA-201ENST00000298130 C11orf63Q6NUN7 778 aa26.2■■□□□ 1.78
SPTSSA-201ENST00000298130 SLC13A5Q86YT5 568 aaPredicted RBP26.2■■□□□ 1.78
SPTSSA-201ENST00000298130 LRRC34Q8IZ02 419 aa26.2■■□□□ 1.78
SPTSSA-201ENST00000298130 TAS1R2Q8TE23 839 aa26.2■■□□□ 1.78
SPTSSA-201ENST00000298130 CTNNA2P26232 953 aa26.19■■□□□ 1.78
SPTSSA-201ENST00000298130 COILP38432 576 aaPredicted RBP26.19■■□□□ 1.78
SPTSSA-201ENST00000298130 MRPS9P82933 396 aaKnown RBP26.19■■□□□ 1.78
SPTSSA-201ENST00000298130 ADCY1Q08828 1119 aa26.19■■□□□ 1.78
SPTSSA-201ENST00000298130 FAM129AQ9BZQ8 928 aa26.19■■□□□ 1.78
SPTSSA-201ENST00000298130 TMEM206Q9H813 350 aa26.19■■□□□ 1.78
SPTSSA-201ENST00000298130 SETQ01105 290 aaPredicted RBP26.19■■□□□ 1.78
SPTSSA-201ENST00000298130 PPP1R7Q15435 360 aa26.19■■□□□ 1.78
SPTSSA-201ENST00000298130 EHMT1Q9H9B1 1298 aa26.19■■□□□ 1.78
SPTSSA-201ENST00000298130 KCND2Q9NZV8 630 aa26.19■■□□□ 1.78
SPTSSA-201ENST00000298130 MIF4GDA9UHW6 222 aaKnown RBP26.18■■□□□ 1.78
SPTSSA-201ENST00000298130 PAEPP09466 180 aa26.18■■□□□ 1.78
SPTSSA-201ENST00000298130 NUDT17P0C025 328 aa26.18■■□□□ 1.78
SPTSSA-201ENST00000298130 ELAC2Q9BQ52 826 aaKnown RBP26.18■■□□□ 1.78
SPTSSA-201ENST00000298130 RAVER2Q9HCJ3 691 aaKnown RBP26.18■■□□□ 1.78
SPTSSA-201ENST00000298130 ZNF70Q9UC06 446 aaPredicted RBP26.18■■□□□ 1.78
SPTSSA-201ENST00000298130 SLX4Q8IY92 1834 aa26.18■■□□□ 1.78
SPTSSA-201ENST00000298130 VIMP08670 466 aaKnown RBP26.18■■□□□ 1.78
SPTSSA-201ENST00000298130 KRT5P13647 590 aa26.18■■□□□ 1.78
SPTSSA-201ENST00000298130 CYP11B1P15538 503 aa26.18■■□□□ 1.78
SPTSSA-201ENST00000298130 SCTRP47872 440 aa26.18■■□□□ 1.78
SPTSSA-201ENST00000298130 SP4Q02446 784 aa26.18■■□□□ 1.78
SPTSSA-201ENST00000298130 SNRNP35Q16560 246 aaKnown RBP26.18■■□□□ 1.78
SPTSSA-201ENST00000298130 FAM71AQ8IYT1 594 aa26.18■■□□□ 1.78
SPTSSA-201ENST00000298130 HERPUD2Q9BSE4 406 aa26.18■■□□□ 1.78
SPTSSA-201ENST00000298130 CTNNAL1Q9UBT7 734 aa26.18■■□□□ 1.78
SPTSSA-201ENST00000298130 HERC5Q9UII4 1024 aaKnown RBP26.18■■□□□ 1.78
SPTSSA-201ENST00000298130 SPDYE2BA6NHP3 402 aa26.18■■□□□ 1.78
SPTSSA-201ENST00000298130 NPM3O75607 178 aaKnown RBP26.18■■□□□ 1.78
SPTSSA-201ENST00000298130 SPDYE6P0CI01 402 aa26.18■■□□□ 1.78
SPTSSA-201ENST00000298130 TKFCQ3LXA3 575 aa26.18■■□□□ 1.78
SPTSSA-201ENST00000298130 XKR9Q5GH70 373 aa26.18■■□□□ 1.78
SPTSSA-201ENST00000298130 ATXN2LQ8WWM7 1075 aaKnown RBP26.18■■□□□ 1.78
SPTSSA-201ENST00000298130 INTS9Q9NV88 658 aaKnown RBP26.18■■□□□ 1.78
SPTSSA-201ENST00000298130 CD2APQ9Y5K6 639 aa26.18■■□□□ 1.78
SPTSSA-201ENST00000298130 RIPK2O43353 540 aa26.17■■□□□ 1.78
SPTSSA-201ENST00000298130 QARSP47897 775 aaKnown RBP26.17■■□□□ 1.78
SPTSSA-201ENST00000298130 SIX1Q15475 284 aaPredicted RBP26.17■■□□□ 1.78
SPTSSA-201ENST00000298130 RNF207Q6ZRF8 634 aa26.17■■□□□ 1.78
SPTSSA-201ENST00000298130 TAX1BP1Q86VP1 789 aa26.17■■□□□ 1.78
SPTSSA-201ENST00000298130 CD101Q93033 1021 aa26.17■■□□□ 1.78
SPTSSA-201ENST00000298130 RIT2Q99578 217 aa26.17■■□□□ 1.78
SPTSSA-201ENST00000298130 CHST7Q9NS84 486 aa26.17■■□□□ 1.78
SPTSSA-201ENST00000298130 MTRF1LQ9UGC7 380 aaKnown RBP26.17■■□□□ 1.78
SPTSSA-201ENST00000298130 TELO2Q9Y4R8 837 aa26.17■■□□□ 1.78
SPTSSA-201ENST00000298130 C5orf60A6NFR6 353 aa26.17■■□□□ 1.78
SPTSSA-201ENST00000298130 CHKAP35790 457 aa26.17■■□□□ 1.78
SPTSSA-201ENST00000298130 PRUNE1Q86TP1 453 aa26.17■■□□□ 1.78
SPTSSA-201ENST00000298130 HVCN1Q96D96 273 aa26.17■■□□□ 1.78
SPTSSA-201ENST00000298130 TAAR1Q96RJ0 339 aa26.17■■□□□ 1.78
SPTSSA-201ENST00000298130 PCYOX1Q9UHG3 505 aa26.17■■□□□ 1.78
SPTSSA-201ENST00000298130 ZNF536O15090 1300 aa26.16■■□□□ 1.78
SPTSSA-201ENST00000298130 MMP13P45452 471 aa26.16■■□□□ 1.78
SPTSSA-201ENST00000298130 MTMR1Q13613 665 aa26.16■■□□□ 1.78
SPTSSA-201ENST00000298130 KCTD17Q8N5Z5 321 aa26.16■■□□□ 1.78
SPTSSA-201ENST00000298130 ZNF317Q96PQ6 595 aaPredicted RBP26.16■■□□□ 1.78
SPTSSA-201ENST00000298130 ZNF341Q9BYN7 854 aa26.16■■□□□ 1.78
SPTSSA-201ENST00000298130 AGO4Q9HCK5 861 aaKnown RBP26.16■■□□□ 1.78
SPTSSA-201ENST00000298130 SPATA31A6Q5VVP1 1343 aa26.16■■□□□ 1.78
SPTSSA-201ENST00000298130 O00370 1275 aa26.16■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms