RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 TAS1R3Q7RTX0 852 aa21.63■■□□□ 1.05
VPS53-201ENST00000291074 HELQQ8TDG4 1101 aa21.63■■□□□ 1.05
VPS53-201ENST00000291074 SHC3Q92529 594 aa21.63■■□□□ 1.05
VPS53-201ENST00000291074 TRIM51Q9BSJ1 452 aa21.63■■□□□ 1.05
VPS53-201ENST00000291074 PSAPP07602 524 aa21.63■■□□□ 1.05
VPS53-201ENST00000291074 FLT3P36888 993 aa21.63■■□□□ 1.05
VPS53-201ENST00000291074 CUL1Q13616 776 aa21.63■■□□□ 1.05
VPS53-201ENST00000291074 ZNF526Q8TF50 670 aaPredicted RBP21.63■■□□□ 1.05
VPS53-201ENST00000291074 SPIRE2Q8WWL2 714 aa21.63■■□□□ 1.05
VPS53-201ENST00000291074 HVCN1Q96D96 273 aa21.63■■□□□ 1.05
VPS53-201ENST00000291074 C12orf42Q96LP6 360 aa21.63■■□□□ 1.05
VPS53-201ENST00000291074 PI4K2AQ9BTU6 479 aa21.63■■□□□ 1.05
VPS53-201ENST00000291074 CARD9Q9H257 536 aa21.63■■□□□ 1.05
VPS53-201ENST00000291074 DPH5Q9H2P9 285 aa21.63■■□□□ 1.05
VPS53-201ENST00000291074 TMEM8AQ9HCN3 771 aa21.63■■□□□ 1.05
VPS53-201ENST00000291074 PMM2O15305 246 aa21.63■■□□□ 1.05
VPS53-201ENST00000291074 RTN2O75298 545 aa21.63■■□□□ 1.05
VPS53-201ENST00000291074 HSPA9P38646 679 aaKnown RBP21.63■■□□□ 1.05
VPS53-201ENST00000291074 GPC5P78333 572 aa21.63■■□□□ 1.05
VPS53-201ENST00000291074 FMO1Q01740 532 aa21.63■■□□□ 1.05
VPS53-201ENST00000291074 SP2Q02086 613 aa21.63■■□□□ 1.05
VPS53-201ENST00000291074 CYP24A1Q07973 514 aa21.63■■□□□ 1.05
VPS53-201ENST00000291074 FSTL1Q12841 308 aa21.63■■□□□ 1.05
VPS53-201ENST00000291074 MTERF2Q49AM1 385 aa21.63■■□□□ 1.05
VPS53-201ENST00000291074 TATDN2Q93075 761 aa21.63■■□□□ 1.05
VPS53-201ENST00000291074 NTPCRQ9BSD7 190 aaKnown RBP21.63■■□□□ 1.05
VPS53-201ENST00000291074 TEX13BQ9BXU2 312 aa21.63■■□□□ 1.05
VPS53-201ENST00000291074 TRIM31Q9BZY9 425 aa21.63■■□□□ 1.05
VPS53-201ENST00000291074 SLITRK6Q9H5Y7 841 aa21.63■■□□□ 1.05
VPS53-201ENST00000291074 ACAD9Q9H845 621 aa21.63■■□□□ 1.05
VPS53-201ENST00000291074 CYP26B1Q9NR63 512 aa21.63■■□□□ 1.05
VPS53-201ENST00000291074 TTC7AQ9ULT0 858 aaPredicted RBP21.63■■□□□ 1.05
VPS53-201ENST00000291074 MFAP3P55082 362 aa21.62■■□□□ 1.05
VPS53-201ENST00000291074 MESDQ14696 234 aa21.62■■□□□ 1.05
VPS53-201ENST00000291074 CATSPERGQ6ZRH7 1159 aa21.62■■□□□ 1.05
VPS53-201ENST00000291074 VTI1AQ96AJ9 217 aa21.62■■□□□ 1.05
VPS53-201ENST00000291074 BICD1Q96G01 975 aa21.62■■□□□ 1.05
VPS53-201ENST00000291074 BTBD6Q96KE9 485 aa21.62■■□□□ 1.05
VPS53-201ENST00000291074 FAM213AQ9BRX8 229 aa21.62■■□□□ 1.05
VPS53-201ENST00000291074 POLR3FQ9H1D9 316 aaPredicted RBP21.62■■□□□ 1.05
VPS53-201ENST00000291074 PDLIM7Q9NR12 457 aa21.62■■□□□ 1.05
VPS53-201ENST00000291074 PLAAQ9Y263 795 aa21.62■■□□□ 1.05
VPS53-201ENST00000291074 POLR2AP24928 1970 aaKnown RBP21.62■■□□□ 1.05
VPS53-201ENST00000291074 MAFGO15525 162 aa21.62■■□□□ 1.05
VPS53-201ENST00000291074 SHOX2O60902 331 aaPredicted RBP21.62■■□□□ 1.05
VPS53-201ENST00000291074 OAZ1P54368 228 aa21.62■■□□□ 1.05
VPS53-201ENST00000291074 POU5F1Q01860 360 aaKnown RBP21.62■■□□□ 1.05
VPS53-201ENST00000291074 SKIDA1Q1XH10 827 aa21.62■■□□□ 1.05
VPS53-201ENST00000291074 SV2AQ7L0J3 742 aa21.62■■□□□ 1.05
VPS53-201ENST00000291074 FBXL13Q8NEE6 735 aa21.62■■□□□ 1.05
VPS53-201ENST00000291074 MFSD14AQ96MC6 490 aa21.62■■□□□ 1.05
VPS53-201ENST00000291074 FBXL18Q96ME1 805 aa21.62■■□□□ 1.05
VPS53-201ENST00000291074 RABEP2Q9H5N1 569 aa21.62■■□□□ 1.05
VPS53-201ENST00000291074 GGA3Q9NZ52 723 aa21.62■■□□□ 1.05
VPS53-201ENST00000291074 COQ4Q9Y3A0 265 aa21.62■■□□□ 1.05
VPS53-201ENST00000291074 SSC5DA1L4H1 1573 aa21.61■■□□□ 1.05
VPS53-201ENST00000291074 DGAT1O75907 488 aa21.61■■□□□ 1.05
VPS53-201ENST00000291074 UAP1Q16222 522 aaPredicted RBP21.61■■□□□ 1.05
VPS53-201ENST00000291074 LMBRD2Q68DH5 695 aaPredicted RBP21.61■■□□□ 1.05
VPS53-201ENST00000291074 ABHD15Q6UXT9 468 aa21.61■■□□□ 1.05
VPS53-201ENST00000291074 CYFIP1Q7L576 1253 aa21.61■■□□□ 1.05
VPS53-201ENST00000291074 KLRG1Q96E93 195 aa21.61■■□□□ 1.05
VPS53-201ENST00000291074 NT5C1BQ96P26 610 aa21.61■■□□□ 1.05
VPS53-201ENST00000291074 RAB20Q9NX57 234 aa21.61■■□□□ 1.05
VPS53-201ENST00000291074 SPDYE16A6NNV3 312 aaPredicted RBP21.61■■□□□ 1.05
VPS53-201ENST00000291074 CYP11B1P15538 503 aa21.61■■□□□ 1.05
VPS53-201ENST00000291074 HSD17B3P37058 310 aa21.61■■□□□ 1.05
VPS53-201ENST00000291074 GPC3P51654 580 aa21.61■■□□□ 1.05
VPS53-201ENST00000291074 HADHBP55084 474 aaKnown RBP21.61■■□□□ 1.05
VPS53-201ENST00000291074 MAATS1Q7Z4T9 603 aa21.61■■□□□ 1.05
VPS53-201ENST00000291074 OR2W6PQ8NHA6 318 aa21.61■■□□□ 1.05
VPS53-201ENST00000291074 CCDC26Q8TAB7 109 aa21.61■■□□□ 1.05
VPS53-201ENST00000291074 ATP6V0A4Q9HBG4 840 aa21.61■■□□□ 1.05
VPS53-201ENST00000291074 COMTP21964 271 aa21.6■■□□□ 1.05
VPS53-201ENST00000291074 C11orf63Q6NUN7 778 aa21.6■■□□□ 1.05
VPS53-201ENST00000291074 GPD1LQ8N335 351 aa21.6■■□□□ 1.05
VPS53-201ENST00000291074 CWC15Q9P013 229 aaKnown RBP21.6■■□□□ 1.05
VPS53-201ENST00000291074 ATP1A2P50993 1020 aa21.6■■□□□ 1.05
VPS53-201ENST00000291074 IRAK1P51617 712 aa21.6■■□□□ 1.05
VPS53-201ENST00000291074 MCCD1P59942 119 aaPredicted RBP21.6■■□□□ 1.05
VPS53-201ENST00000291074 DLK2Q6UY11 383 aa21.6■■□□□ 1.05
VPS53-201ENST00000291074 MCPH1Q8NEM0 835 aa21.6■■□□□ 1.05
VPS53-201ENST00000291074 TMC2Q8TDI7 906 aa21.6■■□□□ 1.05
VPS53-201ENST00000291074 CAPS2Q9BXY5 557 aa21.6■■□□□ 1.05
VPS53-201ENST00000291074 NFASCO94856 1347 aa21.59■■□□□ 1.05
VPS53-201ENST00000291074 SPATA31C2B4DYI2 1134 aa21.59■■□□□ 1.05
VPS53-201ENST00000291074 C19orf81C9J6K1 198 aa21.59■■□□□ 1.05
VPS53-201ENST00000291074 IVLP07476 585 aa21.59■■□□□ 1.05
VPS53-201ENST00000291074 WNT7BP56706 349 aa21.59■■□□□ 1.05
VPS53-201ENST00000291074 PTENP60484 403 aa21.59■■□□□ 1.05
VPS53-201ENST00000291074 CNTN2Q02246 1040 aa21.59■■□□□ 1.05
VPS53-201ENST00000291074 APOBEC3FQ8IUX4 373 aaKnown RBP21.59■■□□□ 1.05
VPS53-201ENST00000291074 GLG1Q92896 1179 aa21.59■■□□□ 1.05
VPS53-201ENST00000291074 C17orf75Q9HAS0 396 aa21.59■■□□□ 1.05
VPS53-201ENST00000291074 CEP85LQ5SZL2 805 aa21.59■■□□□ 1.05
VPS53-201ENST00000291074 EIF1ADQ8N9N8 165 aaKnown RBP21.59■■□□□ 1.05
VPS53-201ENST00000291074 TMEM143Q96AN5 459 aa21.59■■□□□ 1.05
VPS53-201ENST00000291074 ARHGAP28Q9P2N2 729 aa21.59■■□□□ 1.05
VPS53-201ENST00000291074 LCMT1Q9UIC8 334 aa21.59■■□□□ 1.05
VPS53-201ENST00000291074 DIS3Q9Y2L1 958 aaKnown RBP21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms