RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 EPHB4P54760 987 aa29.76■■■□□ 2.35
CHMP4B-201ENST00000217402 ZNF445P59923 1031 aa29.76■■■□□ 2.35
CHMP4B-201ENST00000217402 DCAF4L1Q3SXM0 396 aa29.76■■■□□ 2.35
CHMP4B-201ENST00000217402 SEZ6Q53EL9 994 aa29.76■■■□□ 2.35
CHMP4B-201ENST00000217402 NAT10Q9H0A0 1025 aaKnown RBP29.76■■■□□ 2.35
CHMP4B-201ENST00000217402 HSPBP1Q9NZL4 362 aa29.76■■■□□ 2.35
CHMP4B-201ENST00000217402 AGO2Q9UKV8 859 aaKnown RBP29.76■■■□□ 2.35
CHMP4B-201ENST00000217402 MCF2P10911 925 aa29.75■■■□□ 2.35
CHMP4B-201ENST00000217402 NR2F2P24468 414 aa29.75■■■□□ 2.35
CHMP4B-201ENST00000217402 IKBKEQ14164 716 aa29.75■■■□□ 2.35
CHMP4B-201ENST00000217402 EDRF1Q3B7T1 1238 aa29.75■■■□□ 2.35
CHMP4B-201ENST00000217402 C16orf59Q7L2K0 433 aa29.75■■■□□ 2.35
CHMP4B-201ENST00000217402 APBB1IPQ7Z5R6 666 aaPredicted RBP29.75■■■□□ 2.35
CHMP4B-201ENST00000217402 THNSL1Q8IYQ7 743 aa29.75■■■□□ 2.35
CHMP4B-201ENST00000217402 CEP120Q8N960 986 aa29.75■■■□□ 2.35
CHMP4B-201ENST00000217402 ZSWIM2Q8NEG5 633 aa29.75■■■□□ 2.35
CHMP4B-201ENST00000217402 TSPYL2Q9H2G4 693 aaPredicted RBP29.75■■■□□ 2.35
CHMP4B-201ENST00000217402 TSPY26PQ9H489 355 aa29.75■■■□□ 2.35
CHMP4B-201ENST00000217402 RGS18Q9NS28 235 aa29.75■■■□□ 2.35
CHMP4B-201ENST00000217402 FAM105AQ9NUU6 356 aa29.75■■■□□ 2.35
CHMP4B-201ENST00000217402 GOLGA8IPA6NC78 632 aa29.74■■■□□ 2.35
CHMP4B-201ENST00000217402 GOLGA8JA6NMD2 632 aa29.74■■■□□ 2.35
CHMP4B-201ENST00000217402 OSTNP61366 133 aa29.74■■■□□ 2.35
CHMP4B-201ENST00000217402 CT47A1Q5JQC4 288 aaPredicted RBP29.74■■■□□ 2.35
CHMP4B-201ENST00000217402 DUSP9Q99956 384 aaKnown RBP29.74■■■□□ 2.35
CHMP4B-201ENST00000217402 NXF3Q9H4D5 531 aaKnown RBP29.74■■■□□ 2.35
CHMP4B-201ENST00000217402 HES2Q9Y543 173 aa29.74■■■□□ 2.35
CHMP4B-201ENST00000217402 PCDHB2Q9Y5E7 798 aa29.74■■■□□ 2.35
CHMP4B-201ENST00000217402 RGS19P49795 217 aa29.74■■■□□ 2.35
CHMP4B-201ENST00000217402 ZBTB41Q5SVQ8 909 aa29.74■■■□□ 2.35
CHMP4B-201ENST00000217402 OTOP2Q7RTS6 562 aa29.74■■■□□ 2.35
CHMP4B-201ENST00000217402 C12orf56Q8IXR9 622 aa29.74■■■□□ 2.35
CHMP4B-201ENST00000217402 APOL6Q9BWW8 343 aa29.74■■■□□ 2.35
CHMP4B-201ENST00000217402 IPPQ9Y573 584 aa29.74■■■□□ 2.35
CHMP4B-201ENST00000217402 ENPP3O14638 875 aa29.73■■■□□ 2.35
CHMP4B-201ENST00000217402 ZNF165P49910 485 aa29.73■■■□□ 2.35
CHMP4B-201ENST00000217402 ZNF365Q70YC5 407 aa29.73■■■□□ 2.35
CHMP4B-201ENST00000217402 CSGALNACT2Q8N6G5 542 aa29.73■■■□□ 2.35
CHMP4B-201ENST00000217402 RNF169Q8NCN4 708 aa29.73■■■□□ 2.35
CHMP4B-201ENST00000217402 FAM213AQ9BRX8 229 aa29.73■■■□□ 2.35
CHMP4B-201ENST00000217402 OGTO15294 1046 aa29.72■■■□□ 2.35
CHMP4B-201ENST00000217402 EXOC3O60645 756 aa29.72■■■□□ 2.35
CHMP4B-201ENST00000217402 RPL13P26373 211 aaKnown RBP29.72■■■□□ 2.35
CHMP4B-201ENST00000217402 ACOT2P49753 483 aa29.72■■■□□ 2.35
CHMP4B-201ENST00000217402 RAB27AP51159 221 aa29.72■■■□□ 2.35
CHMP4B-201ENST00000217402 ADAM9Q13443 819 aa29.72■■■□□ 2.35
CHMP4B-201ENST00000217402 SLC24A5Q71RS6 500 aa29.72■■■□□ 2.35
CHMP4B-201ENST00000217402 XXYLT1Q8NBI6 393 aa29.72■■■□□ 2.35
CHMP4B-201ENST00000217402 SMG8Q8ND04 991 aaKnown RBP29.72■■■□□ 2.35
CHMP4B-201ENST00000217402 TRAIPQ9BWF2 469 aa29.72■■■□□ 2.35
CHMP4B-201ENST00000217402 C1orf112Q9NSG2 853 aa29.72■■■□□ 2.35
CHMP4B-201ENST00000217402 LOC101059915A0A1B0GWI6 518 aaPredicted RBP29.71■■■□□ 2.35
CHMP4B-201ENST00000217402 C9IYK1 514 aa29.71■■■□□ 2.35
CHMP4B-201ENST00000217402 FAM189A1O60320 539 aa29.71■■■□□ 2.35
CHMP4B-201ENST00000217402 ACTN1P12814 892 aa29.71■■■□□ 2.35
CHMP4B-201ENST00000217402 TNFSF9P41273 254 aa29.71■■■□□ 2.35
CHMP4B-201ENST00000217402 MAGEA10P43363 369 aaPredicted RBP29.71■■■□□ 2.35
CHMP4B-201ENST00000217402 FKBP3Q00688 224 aaKnown RBP29.71■■■□□ 2.35
CHMP4B-201ENST00000217402 TPD52L1Q16890 204 aaPredicted RBP29.71■■■□□ 2.35
CHMP4B-201ENST00000217402 CEP135Q66GS9 1140 aa29.71■■■□□ 2.35
CHMP4B-201ENST00000217402 TMEM192Q8IY95 271 aa29.71■■■□□ 2.35
CHMP4B-201ENST00000217402 GPD1LQ8N335 351 aa29.71■■■□□ 2.35
CHMP4B-201ENST00000217402 DMAC2Q9NW81 257 aa29.71■■■□□ 2.35
CHMP4B-201ENST00000217402 A0A0U1RQF3 1178 aa29.71■■■□□ 2.35
CHMP4B-201ENST00000217402 FGBP02675 491 aa29.71■■■□□ 2.35
CHMP4B-201ENST00000217402 NFIL3Q16649 462 aa29.71■■■□□ 2.35
CHMP4B-201ENST00000217402 PSRC1Q6PGN9 363 aaPredicted RBP29.71■■■□□ 2.35
CHMP4B-201ENST00000217402 LRRC55Q6ZSA7 311 aa29.71■■■□□ 2.35
CHMP4B-201ENST00000217402 SLC9A9Q8IVB4 645 aa29.71■■■□□ 2.35
CHMP4B-201ENST00000217402 AOPEPQ8N6M6 819 aa29.71■■■□□ 2.35
CHMP4B-201ENST00000217402 RDH13Q8NBN7 331 aa29.71■■■□□ 2.35
CHMP4B-201ENST00000217402 BUD13Q9BRD0 619 aaKnown RBP eCLIP29.71■■■□□ 2.352e-14■■■□□ 19.1
CHMP4B-201ENST00000217402 SNTG2Q9NY99 539 aa29.71■■■□□ 2.35
CHMP4B-201ENST00000217402 ABHD14A-ACY1A0A1B0GW23 586 aa29.7■■■□□ 2.34
CHMP4B-201ENST00000217402 EXTL3O43909 919 aa29.7■■■□□ 2.34
CHMP4B-201ENST00000217402 STAG3L1P0CL83 205 aa29.7■■■□□ 2.34
CHMP4B-201ENST00000217402 CASP4P49662 377 aa29.7■■■□□ 2.34
CHMP4B-201ENST00000217402 FOXR2Q6PJQ5 311 aa29.7■■■□□ 2.34
CHMP4B-201ENST00000217402 LIN28BQ6ZN17 250 aaKnown RBP eCLIP29.7■■■□□ 2.34
CHMP4B-201ENST00000217402 ECHDC2Q86YB7 292 aa29.7■■■□□ 2.34
CHMP4B-201ENST00000217402 LPPQ93052 612 aa29.7■■■□□ 2.34
CHMP4B-201ENST00000217402 ANP32EQ9BTT0 268 aa29.7■■■□□ 2.34
CHMP4B-201ENST00000217402 RNF39Q9H2S5 420 aa29.7■■■□□ 2.34
CHMP4B-201ENST00000217402 H0YGN5 161 aa29.69■■■□□ 2.34
CHMP4B-201ENST00000217402 TULP1O00294 542 aaPredicted RBP29.69■■■□□ 2.34
CHMP4B-201ENST00000217402 KIAA0391O15091 583 aaKnown RBP29.69■■■□□ 2.34
CHMP4B-201ENST00000217402 CETN3O15182 167 aa29.69■■■□□ 2.34
CHMP4B-201ENST00000217402 GRM5P41594 1212 aa29.69■■■□□ 2.34
CHMP4B-201ENST00000217402 MYL5Q02045 173 aa29.69■■■□□ 2.34
CHMP4B-201ENST00000217402 TMEM240Q5SV17 173 aa29.69■■■□□ 2.34
CHMP4B-201ENST00000217402 FAM43BQ6ZT52 329 aaPredicted RBP29.69■■■□□ 2.34
CHMP4B-201ENST00000217402 CBWD2Q8IUF1 395 aa29.69■■■□□ 2.34
CHMP4B-201ENST00000217402 ENOX1Q8TC92 643 aaKnown RBP29.69■■■□□ 2.34
CHMP4B-201ENST00000217402 BPIFA3Q9BQP9 254 aa29.69■■■□□ 2.34
CHMP4B-201ENST00000217402 CCDC94Q9BW85 323 aaPredicted RBP29.69■■■□□ 2.34
CHMP4B-201ENST00000217402 SRRTQ9BXP5 876 aaKnown RBP29.69■■■□□ 2.34
CHMP4B-201ENST00000217402 MEIS3P2A8K0S8 358 aa29.68■■■□□ 2.34
CHMP4B-201ENST00000217402 ZBBXA8MT70 800 aa29.68■■■□□ 2.34
CHMP4B-201ENST00000217402 LDHAP00338 332 aaKnown RBP29.68■■■□□ 2.34
CHMP4B-201ENST00000217402 SKIP12755 728 aa29.68■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms