RNA–Protein interactions for RNA: ENST00000638144.1

CLN6-225, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 576 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-225	ENST00000638144	GIT2	Q14161	759 aa		13.79	□□□□□ -0.2
CLN6-225	ENST00000638144	PCBP1	Q15365	356 aa	Known RBP eCLIP	13.79	□□□□□ -0.2
CLN6-225	ENST00000638144	SKIV2L	Q15477	1246 aa	Known RBP	13.79	□□□□□ -0.2
CLN6-225	ENST00000638144	NOMO2	Q5JPE7	1267 aa		13.79	□□□□□ -0.2
CLN6-225	ENST00000638144	AXDND1	Q5T1B0	1012 aa	Predicted RBP	13.79	□□□□□ -0.2
CLN6-225	ENST00000638144	SLC27A1	Q6PCB7	646 aa		13.79	□□□□□ -0.2
CLN6-225	ENST00000638144	MRPL10	Q7Z7H8	261 aa	Known RBP	13.79	□□□□□ -0.2
CLN6-225	ENST00000638144	THNSL1	Q8IYQ7	743 aa		13.79	□□□□□ -0.2
CLN6-225	ENST00000638144	STAM	Q92783	540 aa		13.79	□□□□□ -0.2
CLN6-225	ENST00000638144	CCDC51	Q96ER9	411 aa		13.79	□□□□□ -0.2
CLN6-225	ENST00000638144	PRIMPOL	Q96LW4	560 aa		13.79	□□□□□ -0.2
CLN6-225	ENST00000638144	ZFP42	Q96MM3	310 aa		13.79	□□□□□ -0.2
CLN6-225	ENST00000638144	GAD1	Q99259	594 aa		13.79	□□□□□ -0.2
CLN6-225	ENST00000638144	RSAD1	Q9HA92	442 aa		13.79	□□□□□ -0.2
CLN6-225	ENST00000638144	TBC1D13	Q9NVG8	400 aa		13.79	□□□□□ -0.2
CLN6-225	ENST00000638144	KLK14	Q9P0G3	267 aa		13.79	□□□□□ -0.2
CLN6-225	ENST00000638144	ARHGAP28	Q9P2N2	729 aa		13.79	□□□□□ -0.2
CLN6-225	ENST00000638144	STK17A	Q9UEE5	414 aa		13.79	□□□□□ -0.2
CLN6-225	ENST00000638144	PCDHA7	Q9UN72	937 aa		13.79	□□□□□ -0.2
CLN6-225	ENST00000638144	RWDD3	Q9Y3V2	267 aa		13.79	□□□□□ -0.2
CLN6-225	ENST00000638144	MORC2	Q9Y6X9	1032 aa	Predicted RBP	13.79	□□□□□ -0.2
CLN6-225	ENST00000638144	TRIP11	Q15643	1979 aa		13.79	□□□□□ -0.2
CLN6-225	ENST00000638144	PHLPP2	Q6ZVD8	1323 aa		13.79	□□□□□ -0.2
CLN6-225	ENST00000638144		K7ERI5	159 aa		13.78	□□□□□ -0.2
CLN6-225	ENST00000638144	ACKR2	O00590	384 aa		13.78	□□□□□ -0.2
CLN6-225	ENST00000638144	N4BP3	O15049	544 aa		13.78	□□□□□ -0.2
CLN6-225	ENST00000638144	CUTA	O60888	179 aa		13.78	□□□□□ -0.2
CLN6-225	ENST00000638144	TBCA	O75347	108 aa	Known RBP	13.78	□□□□□ -0.2
CLN6-225	ENST00000638144	POMC	P01189	267 aa		13.78	□□□□□ -0.2
CLN6-225	ENST00000638144	HARS	P12081	509 aa	Known RBP	13.78	□□□□□ -0.2
CLN6-225	ENST00000638144	PDIA4	P13667	645 aa	Known RBP	13.78	□□□□□ -0.2
CLN6-225	ENST00000638144	DDIT3	P35638	169 aa		13.78	□□□□□ -0.2
CLN6-225	ENST00000638144	SCNN1G	P51170	649 aa		13.78	□□□□□ -0.2
CLN6-225	ENST00000638144	EFNA5	P52803	228 aa		13.78	□□□□□ -0.2
CLN6-225	ENST00000638144	RNASEL	Q05823	741 aa	Known RBP	13.78	□□□□□ -0.2
CLN6-225	ENST00000638144	FAM187B	Q17R55	369 aa		13.78	□□□□□ -0.2
CLN6-225	ENST00000638144	FAM43B	Q6ZT52	329 aa	Predicted RBP	13.78	□□□□□ -0.2
CLN6-225	ENST00000638144	ZNF280B	Q86YH2	543 aa		13.78	□□□□□ -0.2
CLN6-225	ENST00000638144	KCTD17	Q8N5Z5	321 aa		13.78	□□□□□ -0.2
CLN6-225	ENST00000638144	MYCT1	Q8N699	235 aa		13.78	□□□□□ -0.2
CLN6-225	ENST00000638144	TMEM161B	Q8NDZ6	487 aa		13.78	□□□□□ -0.2
CLN6-225	ENST00000638144	DHX58	Q96C10	678 aa		13.78	□□□□□ -0.2
CLN6-225	ENST00000638144	PGBD4	Q96DM1	585 aa		13.78	□□□□□ -0.2
CLN6-225	ENST00000638144	TIPIN	Q9BVW5	301 aa		13.78	□□□□□ -0.2
CLN6-225	ENST00000638144	TARS2	Q9BW92	718 aa	Known RBP	13.78	□□□□□ -0.2
CLN6-225	ENST00000638144	CXCL16	Q9H2A7	254 aa		13.78	□□□□□ -0.2
CLN6-225	ENST00000638144	DNAJB4	Q9UDY4	337 aa		13.78	□□□□□ -0.2
CLN6-225	ENST00000638144	PARP2	Q9UGN5	583 aa		13.78	□□□□□ -0.2
CLN6-225	ENST00000638144	PLAGL2	Q9UPG8	496 aa		13.78	□□□□□ -0.2
CLN6-225	ENST00000638144	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	ARL5C	A6NH57	179 aa		13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	MYMK	A6NI61	221 aa		13.77	□□□□□ -0.21
CLN6-225	ENST00000638144		K7ENM7	598 aa		13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	FGF18	O76093	207 aa		13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	RB1	P06400	928 aa		13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	MAPT	P10636	758 aa	Known RBP	13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	LAG3	P18627	525 aa		13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	NMT1	P30419	496 aa	Known RBP	13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	IRS1	P35568	1242 aa		13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	CAMK1	Q14012	370 aa		13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	ATF7IP2	Q5U623	682 aa		13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	KCNT2	Q6UVM3	1135 aa		13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	CCDC73	Q6ZRK6	1079 aa		13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	ZBTB33	Q86T24	672 aa		13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	TMEM173	Q86WV6	379 aa	Predicted RBP	13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	SFR1	Q86XK3	245 aa		13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	SPPL3	Q8TCT6	385 aa		13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	KCNG4	Q8TDN1	519 aa		13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	LEO1	Q8WVC0	666 aa	Predicted RBP	13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	MRPL38	Q96DV4	380 aa	Known RBP	13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	ZNF558	Q96NG5	402 aa		13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	MRPL9	Q9BYD2	267 aa	Known RBP	13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	NRDE2	Q9H7Z3	1164 aa		13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	GDPD2	Q9HCC8	539 aa		13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	MIOS	Q9NXC5	875 aa		13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	SNTG2	Q9NY99	539 aa		13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	KCND2	Q9NZV8	630 aa		13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	CACNG4	Q9UBN1	327 aa		13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	GDA	Q9Y2T3	454 aa		13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	PCDHB12	Q9Y5F1	795 aa		13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	XIRP2	A4UGR9	3374 aa		13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	CUL9	Q8IWT3	2517 aa		13.77	□□□□□ -0.21
CLN6-225	ENST00000638144	RECQL4	O94761	1208 aa		13.76	□□□□□ -0.21
CLN6-225	ENST00000638144	DDHD2	O94830	711 aa		13.76	□□□□□ -0.21
CLN6-225	ENST00000638144	POU3F3	P20264	500 aa	Predicted RBP	13.76	□□□□□ -0.21
CLN6-225	ENST00000638144	SLC11A1	P49279	550 aa		13.76	□□□□□ -0.21
CLN6-225	ENST00000638144	ZNF131	P52739	623 aa		13.76	□□□□□ -0.21
CLN6-225	ENST00000638144	BCAR1	P56945	870 aa		13.76	□□□□□ -0.21
CLN6-225	ENST00000638144	OSTN	P61366	133 aa		13.76	□□□□□ -0.21
CLN6-225	ENST00000638144	KRT85	P78386	507 aa		13.76	□□□□□ -0.21
CLN6-225	ENST00000638144	E2F4	Q16254	413 aa		13.76	□□□□□ -0.21
CLN6-225	ENST00000638144	TCEAL5	Q5H9L2	206 aa		13.76	□□□□□ -0.21
CLN6-225	ENST00000638144	SV2B	Q7L1I2	683 aa		13.76	□□□□□ -0.21
CLN6-225	ENST00000638144	CEP120	Q8N960	986 aa		13.76	□□□□□ -0.21
CLN6-225	ENST00000638144	URGCP	Q8TCY9	931 aa		13.76	□□□□□ -0.21
CLN6-225	ENST00000638144	BCL7C	Q8WUZ0	217 aa	Predicted RBP	13.76	□□□□□ -0.21
CLN6-225	ENST00000638144	POF1B	Q8WVV4	589 aa		13.76	□□□□□ -0.21
CLN6-225	ENST00000638144	SPIRE2	Q8WWL2	714 aa		13.76	□□□□□ -0.21
CLN6-225	ENST00000638144	DDX12P	Q92771	950 aa		13.76	□□□□□ -0.21
CLN6-225	ENST00000638144	ZBTB45	Q96K62	511 aa	Predicted RBP	13.76	□□□□□ -0.21

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