RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 NYAP1Q6ZVC0 841 aa18.35■□□□□ 0.53
CLN3-252ENST00000636907 FAM213AQ9BRX8 229 aa18.35■□□□□ 0.53
CLN3-252ENST00000636907 ADGRG1Q9Y653 693 aa18.35■□□□□ 0.53
CLN3-252ENST00000636907 EVPLQ92817 2033 aa18.35■□□□□ 0.53
CLN3-252ENST00000636907 CYBAP13498 195 aa18.34■□□□□ 0.53
CLN3-252ENST00000636907 UCHL3P15374 230 aa18.34■□□□□ 0.53
CLN3-252ENST00000636907 GCLMP48507 274 aa18.34■□□□□ 0.53
CLN3-252ENST00000636907 PTENP60484 403 aa18.34■□□□□ 0.53
CLN3-252ENST00000636907 CDK17Q00537 523 aa18.34■□□□□ 0.53
CLN3-252ENST00000636907 CYP24A1Q07973 514 aa18.34■□□□□ 0.53
CLN3-252ENST00000636907 KIAA0753Q2KHM9 967 aa18.34■□□□□ 0.53
CLN3-252ENST00000636907 SLFN12LQ6IEE8 588 aa18.34■□□□□ 0.53
CLN3-252ENST00000636907 TRIM65Q6PJ69 517 aa18.34■□□□□ 0.53
CLN3-252ENST00000636907 ZPBP2Q6X784 338 aa18.34■□□□□ 0.53
CLN3-252ENST00000636907 PARD3BQ8TEW8 1205 aa18.34■□□□□ 0.53
CLN3-252ENST00000636907 CCDC127Q96BQ5 260 aa18.34■□□□□ 0.53
CLN3-252ENST00000636907 MRPL4Q9BYD3 311 aaKnown RBP18.34■□□□□ 0.53
CLN3-252ENST00000636907 ANKFY1Q9P2R3 1169 aa18.34■□□□□ 0.53
CLN3-252ENST00000636907 AGO2Q9UKV8 859 aaKnown RBP18.34■□□□□ 0.53
CLN3-252ENST00000636907 FHOD1Q9Y613 1164 aa18.34■□□□□ 0.53
CLN3-252ENST00000636907 LRRIQ3A6PVS8 624 aaPredicted RBP18.34■□□□□ 0.53
CLN3-252ENST00000636907 KIAA0391O15091 583 aaKnown RBP18.34■□□□□ 0.53
CLN3-252ENST00000636907 N4BP1O75113 896 aaKnown RBP18.34■□□□□ 0.53
CLN3-252ENST00000636907 MYL3P08590 195 aa18.34■□□□□ 0.53
CLN3-252ENST00000636907 CCDC175P0C221 793 aa18.34■□□□□ 0.53
CLN3-252ENST00000636907 NLRP11P59045 1033 aaKnown RBP18.34■□□□□ 0.53
CLN3-252ENST00000636907 CHMP4BP1P59074 171 aa18.34■□□□□ 0.53
CLN3-252ENST00000636907 KIF22Q14807 665 aa18.34■□□□□ 0.53
CLN3-252ENST00000636907 MAPK6Q16659 721 aa18.34■□□□□ 0.53
CLN3-252ENST00000636907 GPIHBP1Q8IV16 184 aa18.34■□□□□ 0.53
CLN3-252ENST00000636907 ACRBPQ8NEB7 543 aa18.34■□□□□ 0.53
CLN3-252ENST00000636907 TMC2Q8TDI7 906 aa18.34■□□□□ 0.53
CLN3-252ENST00000636907 MSTO1Q9BUK6 570 aa18.34■□□□□ 0.53
CLN3-252ENST00000636907 CFHR5Q9BXR6 569 aa18.34■□□□□ 0.53
CLN3-252ENST00000636907 KIAA1586Q9HCI6 787 aa18.34■□□□□ 0.53
CLN3-252ENST00000636907 SETD4Q9NVD3 440 aa18.34■□□□□ 0.53
CLN3-252ENST00000636907 FBXL5Q9UKA1 691 aa18.34■□□□□ 0.53
CLN3-252ENST00000636907 AKT3Q9Y243 479 aa18.34■□□□□ 0.53
CLN3-252ENST00000636907 EPN1Q9Y6I3 576 aaPredicted RBP18.34■□□□□ 0.53
CLN3-252ENST00000636907 A0A0B4J269 797 aa18.33■□□□□ 0.52
CLN3-252ENST00000636907 ZNF233A6NK53 670 aa18.33■□□□□ 0.52
CLN3-252ENST00000636907 P4HA2O15460 535 aa18.33■□□□□ 0.52
CLN3-252ENST00000636907 TRPA1O75762 1119 aa18.33■□□□□ 0.52
CLN3-252ENST00000636907 VTNP04004 478 aa18.33■□□□□ 0.52
CLN3-252ENST00000636907 SMIM10L2AP0DMW4 78 aa18.33■□□□□ 0.52
CLN3-252ENST00000636907 SMIM10L2BP0DMW5 78 aa18.33■□□□□ 0.52
CLN3-252ENST00000636907 TNNT1P13805 278 aa18.33■□□□□ 0.52
CLN3-252ENST00000636907 TMOD1P28289 359 aa18.33■□□□□ 0.52
CLN3-252ENST00000636907 MATR3P43243 847 aaKnown RBP eCLIP18.33■□□□□ 0.52
CLN3-252ENST00000636907 MBTD1Q05BQ5 628 aa18.33■□□□□ 0.52
CLN3-252ENST00000636907 TRIM32Q13049 653 aa18.33■□□□□ 0.52
CLN3-252ENST00000636907 MFSD10Q14728 455 aa18.33■□□□□ 0.52
CLN3-252ENST00000636907 PTPN14Q15678 1187 aa18.33■□□□□ 0.52
CLN3-252ENST00000636907 FSCN1Q16658 493 aaKnown RBP18.33■□□□□ 0.52
CLN3-252ENST00000636907 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.33■□□□□ 0.52
CLN3-252ENST00000636907 PPP1R13LQ8WUF5 828 aa18.33■□□□□ 0.52
CLN3-252ENST00000636907 LMBR1Q8WVP7 490 aa18.33■□□□□ 0.52
CLN3-252ENST00000636907 PPP1R16BQ96T49 567 aa18.33■□□□□ 0.52
CLN3-252ENST00000636907 POP1Q99575 1024 aaKnown RBP18.33■□□□□ 0.52
CLN3-252ENST00000636907 ACO2Q99798 780 aaKnown RBP18.33■□□□□ 0.52
CLN3-252ENST00000636907 NFKBIZQ9BYH8 718 aa18.33■□□□□ 0.52
CLN3-252ENST00000636907 INTS2Q9H0H0 1204 aaKnown RBP18.33■□□□□ 0.52
CLN3-252ENST00000636907 NUCKS1Q9H1E3 243 aaKnown RBP18.33■□□□□ 0.52
CLN3-252ENST00000636907 FZD8Q9H461 694 aa18.33■□□□□ 0.52
CLN3-252ENST00000636907 MINDY3Q9H8M7 445 aa18.33■□□□□ 0.52
CLN3-252ENST00000636907 NHEJ1Q9H9Q4 299 aaPredicted RBP18.33■□□□□ 0.52
CLN3-252ENST00000636907 IFT122Q9HBG6 1241 aa18.33■□□□□ 0.52
CLN3-252ENST00000636907 RNF186Q9NXI6 227 aa18.33■□□□□ 0.52
CLN3-252ENST00000636907 ARHGAP20Q9P2F6 1191 aa18.33■□□□□ 0.52
CLN3-252ENST00000636907 AJAP1Q9UKB5 411 aaPredicted RBP18.33■□□□□ 0.52
CLN3-252ENST00000636907 RRN3P2A6NIE6 340 aa18.32■□□□□ 0.52
CLN3-252ENST00000636907 INO80B-WBP1J3KQ70 363 aa18.32■□□□□ 0.52
CLN3-252ENST00000636907 DUSP11O75319 330 aaKnown RBP18.32■□□□□ 0.52
CLN3-252ENST00000636907 NDUFA10O95299 355 aa18.32■□□□□ 0.52
CLN3-252ENST00000636907 PLEKP08567 350 aaPredicted RBP18.32■□□□□ 0.52
CLN3-252ENST00000636907 YY1P25490 414 aa18.32■□□□□ 0.52
CLN3-252ENST00000636907 PSEN2P49810 448 aa18.32■□□□□ 0.52
CLN3-252ENST00000636907 SFMBT2Q5VUG0 894 aa18.32■□□□□ 0.52
CLN3-252ENST00000636907 GJB7Q6PEY0 223 aa18.32■□□□□ 0.52
CLN3-252ENST00000636907 CRELD2Q6UXH1 353 aaPredicted RBP18.32■□□□□ 0.52
CLN3-252ENST00000636907 EHBP1Q8NDI1 1231 aa18.32■□□□□ 0.52
CLN3-252ENST00000636907 LMO3Q8TAP4 145 aa18.32■□□□□ 0.52
CLN3-252ENST00000636907 SYN2Q92777 582 aaPredicted RBP18.32■□□□□ 0.52
CLN3-252ENST00000636907 INO80BQ9C086 356 aaPredicted RBP18.32■□□□□ 0.52
CLN3-252ENST00000636907 TMEM117Q9H0C3 514 aa18.32■□□□□ 0.52
CLN3-252ENST00000636907 TOPORSQ9NS56 1045 aaPredicted RBP18.32■□□□□ 0.52
CLN3-252ENST00000636907 A0A087WZ62 844 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 MYADML2A6NDP7 307 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 HAS3O00219 553 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 TULP1O00294 542 aaPredicted RBP18.31■□□□□ 0.52
CLN3-252ENST00000636907 ACKR2O00590 384 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 CLDN3O15551 220 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 TOM1L1O75674 476 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 LDHAP00338 332 aaKnown RBP18.31■□□□□ 0.52
CLN3-252ENST00000636907 PHKA2P46019 1235 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 ACOT2P49753 483 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 VEGFBP49765 207 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 MXI1P50539 228 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 POU5F1BQ06416 359 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 ENPEPQ07075 957 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms