RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 KIF11P52732 1056 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 GABREP78334 506 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 BLOC1S1P78537 153 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 NHLH1Q02575 133 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 MYBPC3Q14896 1274 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 ZNF169Q14929 603 aaPredicted RBP1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 SF3A1Q15459 793 aaKnown RBP1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 DDB1Q16531 1140 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 SRSF7Q16629 238 aaKnown RBP eCLIP1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 TTC38Q5R3I4 469 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 AKNAD1Q5T1N1 836 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 ZNF425Q6IV72 752 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 SPATC1Q76KD6 591 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 OVCH1Q7RTY7 1134 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 C2orf69Q8N8R5 385 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 IGSF22Q8N9C0 903 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 ST13P5Q8NFI4 369 aaPredicted RBP1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 ANKS1AQ92625 1134 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 RPGRQ92834 1020 aaKnown RBP1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 IL17RAQ96F46 866 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 MAML3Q96JK9 1138 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 PHACTR3Q96KR7 559 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 Q96MF0 132 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 PDCD2LQ9BRP1 358 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 HIRIP3Q9BW71 556 aaPredicted RBP1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 ALOXE3Q9BYJ1 711 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 CELF4Q9BZC1 486 aaKnown RBP1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 MTG2Q9H4K7 406 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 SEMA4GQ9NTN9 838 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 ASB6Q9NWX5 421 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 POGKQ9P215 609 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 USP35Q9P2H5 1018 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 DKK2Q9UBU2 259 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 USP15Q9Y4E8 981 aaPredicted RBP1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 WIZO95785 1651 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 MANSC4A6NHS7 340 aaPredicted RBP1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 CYSRT1A8MQ03 144 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 TRIM38O00635 465 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 DIAPH1O60610 1272 aaKnown RBP1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 CDKL5O76039 1030 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 FSBPO95073 299 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 BMP15O95972 392 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 FGRP09769 529 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 SPATA31D3P0C874 917 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 GAAP10253 952 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 EGR2P11161 476 aaPredicted RBP1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 GZMKP49863 264 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 BCAR1P56945 870 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 PROK1P58294 105 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 MRPS35P82673 323 aaKnown RBP1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 MXRA7P84157 204 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 EXOSC10Q01780 885 aaKnown RBP1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 DUSP2Q05923 314 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 ADCY2Q08462 1091 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 SSRP1Q08945 709 aaKnown RBP1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 MRPL49Q13405 166 aaKnown RBP1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 KLHL22Q53GT1 634 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 TMEM177Q53S58 311 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 METTL24Q5JXM2 366 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 CC2D1AQ6P1N0 951 aaPredicted RBP1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 Q6ZNX1 250 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 ZNF788Q6ZQV5 615 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 SPATA31D4Q6ZUB0 917 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 DOK3Q7L591 496 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 SLC43A3Q8NBI5 491 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 PDPRQ8NCN5 879 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 PIK3C3Q8NEB9 887 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 ACTRT2Q8TDY3 377 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 SLC9A6Q92581 669 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 EXOC2Q96KP1 924 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 MAGEB10Q96LZ2 347 aaPredicted RBP1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 SRPK1Q96SB4 655 aaKnown RBP1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 DNAJC2Q99543 621 aaKnown RBP1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 NOL10Q9BSC4 688 aaKnown RBP1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 BOCQ9BWV1 1114 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 MTFR1LQ9H019 292 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 ENKD1Q9H0I2 346 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 POFUT1Q9H488 388 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 PCIF1Q9H4Z3 704 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 SLC52A2Q9HAB3 445 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 USP36Q9P275 1121 aaKnown RBP1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 LRIT1Q9P2V4 623 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 FPGT-TNNI3KV9GXZ4 949 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 KIF13AQ9H1H9 1805 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 MAST3O60307 1309 aa1.65□□□□□ -2.15
SMARCB1-209ENST00000635578 CECR2Q9BXF3 1484 aa1.64□□□□□ -2.15
SMARCB1-209ENST00000635578 A0A0A6YYJ9 748 aa1.64□□□□□ -2.15
SMARCB1-209ENST00000635578 MARCH11A6NNE9 402 aa1.64□□□□□ -2.15
SMARCB1-209ENST00000635578 DVL2O14641 736 aa1.64□□□□□ -2.15
SMARCB1-209ENST00000635578 OPHN1O60890 802 aa1.64□□□□□ -2.15
SMARCB1-209ENST00000635578 PCDH8O95206 1070 aa1.64□□□□□ -2.15
SMARCB1-209ENST00000635578 FOSP01100 380 aaPredicted RBP1.64□□□□□ -2.15
SMARCB1-209ENST00000635578 IGKV2-30P06310 120 aa1.64□□□□□ -2.15
SMARCB1-209ENST00000635578 FAM153BP0C7A2 387 aa1.64□□□□□ -2.15
SMARCB1-209ENST00000635578 CBSLP0DN79 551 aa1.64□□□□□ -2.15
SMARCB1-209ENST00000635578 ZBTB48P10074 688 aaPredicted RBP1.64□□□□□ -2.15
SMARCB1-209ENST00000635578 PTX3P26022 381 aaPredicted RBP1.64□□□□□ -2.15
SMARCB1-209ENST00000635578 CBSP35520 551 aa1.64□□□□□ -2.15
SMARCB1-209ENST00000635578 FNTBP49356 437 aa1.64□□□□□ -2.15
SMARCB1-209ENST00000635578 RARRES1P49788 294 aa1.64□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms