RNA–Protein interactions for RNA: ENST00000617771.5

VEGFA-228, Transcript of vascular endothelial growth factor A, human

TSL 1 (best) BASIC

Gene VEGFA, Length 1,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-228	ENST00000617771	BHMT2	Q9H2M3	363 aa		27.9	■■■□□ 2.06
VEGFA-228	ENST00000617771	EPHX3	Q9H6B9	360 aa		27.9	■■■□□ 2.06
VEGFA-228	ENST00000617771	DDX19A	Q9NUU7	478 aa	Known RBP	27.9	■■■□□ 2.06
VEGFA-228	ENST00000617771	B4GALT5	O43286	388 aa		27.89	■■■□□ 2.06
VEGFA-228	ENST00000617771	DDHD2	O94830	711 aa		27.89	■■■□□ 2.06
VEGFA-228	ENST00000617771	ALDH2	P05091	517 aa		27.89	■■■□□ 2.06
VEGFA-228	ENST00000617771	PPP2R5A	Q15172	486 aa		27.89	■■■□□ 2.06
VEGFA-228	ENST00000617771	FAM187B	Q17R55	369 aa		27.89	■■■□□ 2.06
VEGFA-228	ENST00000617771	ZBP1	Q9H171	429 aa		27.89	■■■□□ 2.06
VEGFA-228	ENST00000617771	GIT1	Q9Y2X7	761 aa		27.89	■■■□□ 2.06
VEGFA-228	ENST00000617771	NCOR1	O75376	2440 aa		27.89	■■■□□ 2.05
VEGFA-228	ENST00000617771		A0A1B0GUA9	196 aa		27.88	■■■□□ 2.05
VEGFA-228	ENST00000617771	C2orf71	A6NGG8	1288 aa		27.88	■■■□□ 2.05
VEGFA-228	ENST00000617771	C19orf67	A6NJJ6	358 aa		27.88	■■■□□ 2.05
VEGFA-228	ENST00000617771	INPPL1	O15357	1258 aa		27.88	■■■□□ 2.05
VEGFA-228	ENST00000617771	CXCL14	O95715	111 aa		27.88	■■■□□ 2.05
VEGFA-228	ENST00000617771	NAMPT	P43490	491 aa		27.88	■■■□□ 2.05
VEGFA-228	ENST00000617771	AFF1	P51825	1210 aa	Known RBP	27.88	■■■□□ 2.05
VEGFA-228	ENST00000617771	RBM10	P98175	930 aa	Known RBP	27.88	■■■□□ 2.05
VEGFA-228	ENST00000617771	KCNC3	Q14003	757 aa		27.88	■■■□□ 2.05
VEGFA-228	ENST00000617771	GIT2	Q14161	759 aa		27.88	■■■□□ 2.05
VEGFA-228	ENST00000617771	TMEM87A	Q8NBN3	555 aa		27.88	■■■□□ 2.05
VEGFA-228	ENST00000617771	DEPTOR	Q8TB45	409 aa		27.88	■■■□□ 2.05
VEGFA-228	ENST00000617771	KHSRP	Q92945	711 aa	Known RBP eCLIP	27.88	■■■□□ 2.05	1e-9	■■■□□ 15.1
VEGFA-228	ENST00000617771	IFT74	Q96LB3	600 aa		27.88	■■■□□ 2.05
VEGFA-228	ENST00000617771	APOL6	Q9BWW8	343 aa		27.88	■■■□□ 2.05
VEGFA-228	ENST00000617771	RNF39	Q9H2S5	420 aa		27.88	■■■□□ 2.05
VEGFA-228	ENST00000617771	FZD8	Q9H461	694 aa		27.88	■■■□□ 2.05
VEGFA-228	ENST00000617771	DNM3	Q9UQ16	869 aa		27.88	■■■□□ 2.05
VEGFA-228	ENST00000617771	FAN1	Q9Y2M0	1017 aa		27.88	■■■□□ 2.05
VEGFA-228	ENST00000617771	HES2	Q9Y543	173 aa		27.88	■■■□□ 2.05
VEGFA-228	ENST00000617771	ARL5C	A6NH57	179 aa		27.87	■■■□□ 2.05
VEGFA-228	ENST00000617771	PI4K2B	G5E9Z4	385 aa		27.87	■■■□□ 2.05
VEGFA-228	ENST00000617771	B4GALT3	O60512	393 aa		27.87	■■■□□ 2.05
VEGFA-228	ENST00000617771	NPTXR	O95502	500 aa		27.87	■■■□□ 2.05
VEGFA-228	ENST00000617771	MLH1	P40692	756 aa		27.87	■■■□□ 2.05
VEGFA-228	ENST00000617771	ATP2C1	P98194	919 aa	Predicted RBP	27.87	■■■□□ 2.05
VEGFA-228	ENST00000617771	MAPK6	Q16659	721 aa		27.87	■■■□□ 2.05
VEGFA-228	ENST00000617771	LLGL2	Q6P1M3	1020 aa		27.87	■■■□□ 2.05
VEGFA-228	ENST00000617771	BCL7C	Q8WUZ0	217 aa	Predicted RBP	27.87	■■■□□ 2.05
VEGFA-228	ENST00000617771	BSND	Q8WZ55	320 aa		27.87	■■■□□ 2.05
VEGFA-228	ENST00000617771	KIFAP3	Q92845	792 aa		27.87	■■■□□ 2.05
VEGFA-228	ENST00000617771	GAD1	Q99259	594 aa		27.87	■■■□□ 2.05
VEGFA-228	ENST00000617771	NXF3	Q9H4D5	531 aa	Known RBP	27.87	■■■□□ 2.05
VEGFA-228	ENST00000617771	USP15	Q9Y4E8	981 aa	Predicted RBP	27.87	■■■□□ 2.05
VEGFA-228	ENST00000617771	BDP1	A6H8Y1	2624 aa		27.86	■■■□□ 2.05
VEGFA-228	ENST00000617771	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	27.86	■■■□□ 2.05
VEGFA-228	ENST00000617771	CTSA	P10619	480 aa		27.86	■■■□□ 2.05
VEGFA-228	ENST00000617771	IL17A	Q16552	155 aa		27.86	■■■□□ 2.05
VEGFA-228	ENST00000617771	TMEM132A	Q24JP5	1023 aa		27.86	■■■□□ 2.05
VEGFA-228	ENST00000617771	LARP1B	Q659C4	914 aa	Known RBP	27.86	■■■□□ 2.05
VEGFA-228	ENST00000617771	ANKRD54	Q6NXT1	300 aa		27.86	■■■□□ 2.05
VEGFA-228	ENST00000617771	CDR2L	Q86X02	465 aa	Predicted RBP	27.86	■■■□□ 2.05
VEGFA-228	ENST00000617771	CASP10	Q92851	521 aa		27.86	■■■□□ 2.05
VEGFA-228	ENST00000617771	PP2D1	A8MPX8	630 aa		27.85	■■■□□ 2.05
VEGFA-228	ENST00000617771	NRP1	O14786	923 aa		27.85	■■■□□ 2.05
VEGFA-228	ENST00000617771	N4BP3	O15049	544 aa		27.85	■■■□□ 2.05
VEGFA-228	ENST00000617771	IRAK3	Q9Y616	596 aa		27.85	■■■□□ 2.05
VEGFA-228	ENST00000617771	ZMYM2	Q9UBW7	1377 aa		27.85	■■■□□ 2.05
VEGFA-228	ENST00000617771	CLASP2	O75122	1294 aa	Known RBP	27.84	■■■□□ 2.05
VEGFA-228	ENST00000617771	PRKCB	P05771	671 aa		27.84	■■■□□ 2.05
VEGFA-228	ENST00000617771	ALAD	P13716	330 aa		27.84	■■■□□ 2.05
VEGFA-228	ENST00000617771	HOXB8	P17481	243 aa	Predicted RBP	27.84	■■■□□ 2.05
VEGFA-228	ENST00000617771	SCNN1G	P51170	649 aa		27.84	■■■□□ 2.05
VEGFA-228	ENST00000617771	PRPF4B	Q13523	1007 aa	Known RBP	27.84	■■■□□ 2.05
VEGFA-228	ENST00000617771	ZFP42	Q96MM3	310 aa		27.84	■■■□□ 2.05
VEGFA-228	ENST00000617771	HCFC2	Q9Y5Z7	792 aa		27.84	■■■□□ 2.05
VEGFA-228	ENST00000617771		E9PMD0	336 aa		27.83	■■■□□ 2.05
VEGFA-228	ENST00000617771	NR1I2	O75469	434 aa		27.83	■■■□□ 2.05
VEGFA-228	ENST00000617771	AKAP5	P24588	427 aa		27.83	■■■□□ 2.05
VEGFA-228	ENST00000617771	CDC25A	P30304	524 aa		27.83	■■■□□ 2.05
VEGFA-228	ENST00000617771	OR1G1	P47890	313 aa		27.83	■■■□□ 2.05
VEGFA-228	ENST00000617771	EFNA5	P52803	228 aa		27.83	■■■□□ 2.05
VEGFA-228	ENST00000617771	COLGALT2	Q8IYK4	626 aa		27.83	■■■□□ 2.05
VEGFA-228	ENST00000617771	AUTS2	Q8WXX7	1259 aa		27.83	■■■□□ 2.05
VEGFA-228	ENST00000617771	ADPGK	Q9BRR6	497 aa		27.83	■■■□□ 2.05
VEGFA-228	ENST00000617771	CCDC113	Q9H0I3	377 aa		27.83	■■■□□ 2.05
VEGFA-228	ENST00000617771	DAXX	Q9UER7	740 aa	Predicted RBP	27.83	■■■□□ 2.05
VEGFA-228	ENST00000617771	PARP2	Q9UGN5	583 aa		27.83	■■■□□ 2.05
VEGFA-228	ENST00000617771	ACKR2	O00590	384 aa		27.82	■■■□□ 2.04
VEGFA-228	ENST00000617771	LIG1	P18858	919 aa		27.82	■■■□□ 2.04
VEGFA-228	ENST00000617771	DSC1	Q08554	894 aa		27.82	■■■□□ 2.04
VEGFA-228	ENST00000617771	TPRN	Q4KMQ1	711 aa		27.82	■■■□□ 2.04
VEGFA-228	ENST00000617771	TMEM31	Q5JXX7	168 aa		27.82	■■■□□ 2.04
VEGFA-228	ENST00000617771	ARL6IP4	Q66PJ3	421 aa	Known RBP	27.82	■■■□□ 2.04
VEGFA-228	ENST00000617771	SUSD6	Q92537	303 aa		27.82	■■■□□ 2.04
VEGFA-228	ENST00000617771	RPS6KC1	Q96S38	1066 aa		27.82	■■■□□ 2.04
VEGFA-228	ENST00000617771	MMTAG2	Q9BU76	263 aa	Known RBP	27.82	■■■□□ 2.04
VEGFA-228	ENST00000617771	VN1R3	Q9BXE9	311 aa		27.82	■■■□□ 2.04
VEGFA-228	ENST00000617771	PDZD7	Q9H5P4	517 aa		27.82	■■■□□ 2.04
VEGFA-228	ENST00000617771	MIOS	Q9NXC5	875 aa		27.82	■■■□□ 2.04
VEGFA-228	ENST00000617771	PRG3	Q9Y2Y8	225 aa	Predicted RBP	27.82	■■■□□ 2.04
VEGFA-228	ENST00000617771	DCX	O43602	365 aa		27.81	■■■□□ 2.04
VEGFA-228	ENST00000617771	SYCE2	Q6PIF2	218 aa		27.81	■■■□□ 2.04
VEGFA-228	ENST00000617771	KCTD17	Q8N5Z5	321 aa		27.81	■■■□□ 2.04
VEGFA-228	ENST00000617771	PHF7	Q9BWX1	381 aa	Predicted RBP	27.81	■■■□□ 2.04
VEGFA-228	ENST00000617771	S1PR5	Q9H228	398 aa		27.81	■■■□□ 2.04
VEGFA-228	ENST00000617771	POLD4	Q9HCU8	107 aa		27.81	■■■□□ 2.04
VEGFA-228	ENST00000617771	VWA3A	A6NCI4	1184 aa		27.8	■■■□□ 2.04
VEGFA-228	ENST00000617771	GPR37L1	O60883	481 aa		27.8	■■■□□ 2.04

Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms