RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 TMEM221A6NGB7 291 aa19.04■□□□□ 0.64
CLN3-217ENST00000565354 INO80B-WBP1J3KQ70 363 aa19.04■□□□□ 0.64
CLN3-217ENST00000565354 M0R296 226 aa19.04■□□□□ 0.64
CLN3-217ENST00000565354 ENPP3O14638 875 aa19.04■□□□□ 0.64
CLN3-217ENST00000565354 CSPG5O95196 566 aa19.04■□□□□ 0.64
CLN3-217ENST00000565354 GUCY2CP25092 1073 aa19.04■□□□□ 0.64
CLN3-217ENST00000565354 NDUFV1P49821 464 aa19.04■□□□□ 0.64
CLN3-217ENST00000565354 CAMK1Q14012 370 aa19.04■□□□□ 0.64
CLN3-217ENST00000565354 IER5LQ5T953 404 aa19.04■□□□□ 0.64
CLN3-217ENST00000565354 TRIM67Q6ZTA4 783 aa19.04■□□□□ 0.64
CLN3-217ENST00000565354 C1orf186Q6ZWK4 172 aa19.04■□□□□ 0.64
CLN3-217ENST00000565354 SV2BQ7L1I2 683 aa19.04■□□□□ 0.64
CLN3-217ENST00000565354 PBXIP1Q96AQ6 731 aa19.04■□□□□ 0.64
CLN3-217ENST00000565354 DHX58Q96C10 678 aa19.04■□□□□ 0.64
CLN3-217ENST00000565354 PRRX2Q99811 253 aa19.04■□□□□ 0.64
CLN3-217ENST00000565354 ALG13Q9NP73 1137 aaKnown RBP19.04■□□□□ 0.64
CLN3-217ENST00000565354 PLAGL2Q9UPG8 496 aa19.04■□□□□ 0.64
CLN3-217ENST00000565354 ERLIN2O94905 339 aa19.03■□□□□ 0.64
CLN3-217ENST00000565354 NAMPTP43490 491 aa19.03■□□□□ 0.64
CLN3-217ENST00000565354 PTENP60484 403 aa19.03■□□□□ 0.64
CLN3-217ENST00000565354 POU5F1BQ06416 359 aa19.03■□□□□ 0.64
CLN3-217ENST00000565354 NCBP1Q09161 790 aaKnown RBP19.03■□□□□ 0.64
CLN3-217ENST00000565354 DMP1Q13316 513 aaPredicted RBP19.03■□□□□ 0.64
CLN3-217ENST00000565354 RESP18Q5W5W9 173 aa19.03■□□□□ 0.64
CLN3-217ENST00000565354 ADALQ6DHV7 355 aa19.03■□□□□ 0.64
CLN3-217ENST00000565354 FAM43BQ6ZT52 329 aaPredicted RBP19.03■□□□□ 0.64
CLN3-217ENST00000565354 IQUBQ8NA54 791 aa19.03■□□□□ 0.64
CLN3-217ENST00000565354 P2RX5Q93086 422 aa19.03■□□□□ 0.64
CLN3-217ENST00000565354 PPP2R3CQ969Q6 453 aa19.03■□□□□ 0.64
CLN3-217ENST00000565354 PYM1Q9BRP8 204 aaKnown RBP19.03■□□□□ 0.64
CLN3-217ENST00000565354 C2orf40Q9H1Z8 148 aa19.03■□□□□ 0.64
CLN3-217ENST00000565354 ZHX3Q9H4I2 956 aa19.03■□□□□ 0.64
CLN3-217ENST00000565354 IFT122Q9HBG6 1241 aa19.03■□□□□ 0.64
CLN3-217ENST00000565354 SPTBN4Q9H254 2564 aa19.02■□□□□ 0.64
CLN3-217ENST00000565354 TCHHQ07283 1943 aa19.02■□□□□ 0.64
CLN3-217ENST00000565354 CCDC169A6NNP5 214 aa19.02■□□□□ 0.64
CLN3-217ENST00000565354 TBCAO75347 108 aaKnown RBP19.02■□□□□ 0.64
CLN3-217ENST00000565354 DGKIO75912 1065 aa19.02■□□□□ 0.64
CLN3-217ENST00000565354 FAM13AO94988 1023 aa19.02■□□□□ 0.64
CLN3-217ENST00000565354 LIG1P18858 919 aa19.02■□□□□ 0.64
CLN3-217ENST00000565354 PEX3P56589 373 aa19.02■□□□□ 0.64
CLN3-217ENST00000565354 CACNB1Q02641 598 aaPredicted RBP19.02■□□□□ 0.64
CLN3-217ENST00000565354 SUGP1Q8IWZ8 645 aaKnown RBP19.02■□□□□ 0.64
CLN3-217ENST00000565354 SMRP1Q8NCR6 262 aa19.02■□□□□ 0.64
CLN3-217ENST00000565354 LRRC15Q8TF66 581 aa19.02■□□□□ 0.64
CLN3-217ENST00000565354 ADAM2Q99965 735 aa19.02■□□□□ 0.64
CLN3-217ENST00000565354 LRFN2Q9ULH4 789 aa19.02■□□□□ 0.64
CLN3-217ENST00000565354 PIN4Q9Y237 131 aaKnown RBP19.02■□□□□ 0.64
CLN3-217ENST00000565354 A0A087X0B3 334 aa19.01■□□□□ 0.63
CLN3-217ENST00000565354 NPHP3-ACAD11A0A0J9YXS1 232 aa19.01■□□□□ 0.63
CLN3-217ENST00000565354 LOC730098B7Z3J9 87 aa19.01■□□□□ 0.63
CLN3-217ENST00000565354 POLR2DO15514 142 aaKnown RBP19.01■□□□□ 0.63
CLN3-217ENST00000565354 ZXDAP98168 799 aa19.01■□□□□ 0.63
CLN3-217ENST00000565354 TMEM132AQ24JP5 1023 aa19.01■□□□□ 0.63
CLN3-217ENST00000565354 EFHBQ8N7U6 833 aa19.01■□□□□ 0.63
CLN3-217ENST00000565354 BSNDQ8WZ55 320 aa19.01■□□□□ 0.63
CLN3-217ENST00000565354 LRRC27Q9C0I9 530 aa19.01■□□□□ 0.63
CLN3-217ENST00000565354 TMX1Q9H3N1 280 aa19.01■□□□□ 0.63
CLN3-217ENST00000565354 CUEDC2Q9H467 287 aa19.01■□□□□ 0.63
CLN3-217ENST00000565354 C17orf75Q9HAS0 396 aa19.01■□□□□ 0.63
CLN3-217ENST00000565354 KMT5AQ9NQR1 393 aa19.01■□□□□ 0.63
CLN3-217ENST00000565354 C1orf112Q9NSG2 853 aa19.01■□□□□ 0.63
CLN3-217ENST00000565354 RNF216Q9NWF9 866 aaPredicted RBP19.01■□□□□ 0.63
CLN3-217ENST00000565354 DACT1Q9NYF0 836 aa19.01■□□□□ 0.63
CLN3-217ENST00000565354 CLEC1BQ9P126 229 aa19.01■□□□□ 0.63
CLN3-217ENST00000565354 KCNG1Q9UIX4 513 aa19.01■□□□□ 0.63
CLN3-217ENST00000565354 ODF2LQ9ULJ1 636 aa19.01■□□□□ 0.63
CLN3-217ENST00000565354 SFI1A8K8P3 1242 aa19■□□□□ 0.63
CLN3-217ENST00000565354 ITGB1P05556 798 aa19■□□□□ 0.63
CLN3-217ENST00000565354 STAG3L1P0CL83 205 aa19■□□□□ 0.63
CLN3-217ENST00000565354 CMA1P23946 247 aa19■□□□□ 0.63
CLN3-217ENST00000565354 DNAJB1P25685 340 aa19■□□□□ 0.63
CLN3-217ENST00000565354 SMTNP53814 917 aa19■□□□□ 0.63
CLN3-217ENST00000565354 AMPD3Q01432 767 aa19■□□□□ 0.63
CLN3-217ENST00000565354 TCF15Q12870 199 aa19■□□□□ 0.63
CLN3-217ENST00000565354 COASYQ13057 564 aa19■□□□□ 0.63
CLN3-217ENST00000565354 CBX2Q14781 532 aaPredicted RBP19■□□□□ 0.63
CLN3-217ENST00000565354 PCBP1Q15365 356 aaKnown RBP eCLIP19■□□□□ 0.63
CLN3-217ENST00000565354 NAALADL2Q58DX5 795 aa19■□□□□ 0.63
CLN3-217ENST00000565354 ARSHQ5FYA8 562 aa19■□□□□ 0.63
CLN3-217ENST00000565354 TWF2Q6IBS0 349 aaKnown RBP19■□□□□ 0.63
CLN3-217ENST00000565354 DYMQ7RTS9 669 aa19■□□□□ 0.63
CLN3-217ENST00000565354 IFNLR1Q8IU57 520 aaPredicted RBP19■□□□□ 0.63
CLN3-217ENST00000565354 CEP57L1Q8IYX8 460 aa19■□□□□ 0.63
CLN3-217ENST00000565354 FBXL6Q8N531 539 aa19■□□□□ 0.63
CLN3-217ENST00000565354 SPPL3Q8TCT6 385 aa19■□□□□ 0.63
CLN3-217ENST00000565354 REEP2Q9BRK0 252 aa19■□□□□ 0.63
CLN3-217ENST00000565354 NFKBIZQ9BYH8 718 aa19■□□□□ 0.63
CLN3-217ENST00000565354 MINDY3Q9H8M7 445 aa19■□□□□ 0.63
CLN3-217ENST00000565354 PRMT7Q9NVM4 692 aaPredicted RBP19■□□□□ 0.63
CLN3-217ENST00000565354 LARSQ9P2J5 1176 aaKnown RBP19■□□□□ 0.63
CLN3-217ENST00000565354 KCNH3Q9ULD8 1083 aa19■□□□□ 0.63
CLN3-217ENST00000565354 MRPL42Q9Y6G3 142 aaKnown RBP19■□□□□ 0.63
CLN3-217ENST00000565354 PLXNA4Q9HCM2 1894 aa18.99■□□□□ 0.63
CLN3-217ENST00000565354 PTPRZ1P23471 2315 aaPredicted RBP18.99■□□□□ 0.63
CLN3-217ENST00000565354 A0A1B0GVL5 298 aa18.99■□□□□ 0.63
CLN3-217ENST00000565354 MGEA5O60502 916 aa18.99■□□□□ 0.63
CLN3-217ENST00000565354 PLS3P13797 630 aa18.99■□□□□ 0.63
CLN3-217ENST00000565354 PFKFB1P16118 471 aa18.99■□□□□ 0.63
CLN3-217ENST00000565354 MBTD1Q05BQ5 628 aa18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms