RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 TLDC1Q6P9B6 456 aa17.49■□□□□ 0.39
SHMT2-231ENST00000557433 TPH2Q8IWU9 490 aa17.49■□□□□ 0.39
SHMT2-231ENST00000557433 CCDC105Q8IYK2 499 aa17.49■□□□□ 0.39
SHMT2-231ENST00000557433 IFT74Q96LB3 600 aa17.49■□□□□ 0.39
SHMT2-231ENST00000557433 EBF2Q9HAK2 575 aa17.49■□□□□ 0.39
SHMT2-231ENST00000557433 UVRAGQ9P2Y5 699 aa17.49■□□□□ 0.39
SHMT2-231ENST00000557433 ZNF536O15090 1300 aa17.49■□□□□ 0.39
SHMT2-231ENST00000557433 KLRG2A4D1S0 409 aaPredicted RBP17.49■□□□□ 0.39
SHMT2-231ENST00000557433 SFI1A8K8P3 1242 aa17.49■□□□□ 0.39
SHMT2-231ENST00000557433 F5H6K3 240 aa17.49■□□□□ 0.39
SHMT2-231ENST00000557433 TCEA3O75764 348 aa17.49■□□□□ 0.39
SHMT2-231ENST00000557433 TRIM49P0CI25 452 aa17.49■□□□□ 0.39
SHMT2-231ENST00000557433 TRIM49CP0CI26 452 aa17.49■□□□□ 0.39
SHMT2-231ENST00000557433 ALADP13716 330 aa17.49■□□□□ 0.39
SHMT2-231ENST00000557433 COMTP21964 271 aa17.49■□□□□ 0.39
SHMT2-231ENST00000557433 COPB2P35606 906 aa17.49■□□□□ 0.39
SHMT2-231ENST00000557433 ODR4Q5SWX8 454 aa17.49■□□□□ 0.39
SHMT2-231ENST00000557433 APOBEC3HQ6NTF7 200 aaKnown RBP17.49■□□□□ 0.39
SHMT2-231ENST00000557433 TATDN1Q6P1N9 297 aa17.49■□□□□ 0.39
SHMT2-231ENST00000557433 TTC27Q6P3X3 843 aa17.49■□□□□ 0.39
SHMT2-231ENST00000557433 CERS5Q8N5B7 392 aa17.49■□□□□ 0.39
SHMT2-231ENST00000557433 DYDC2Q96IM9 177 aa17.49■□□□□ 0.39
SHMT2-231ENST00000557433 RSRC1Q96IZ7 334 aaKnown RBP17.49■□□□□ 0.39
SHMT2-231ENST00000557433 CEP83Q9Y592 693 aa17.49■□□□□ 0.39
SHMT2-231ENST00000557433 SERPINB2P05120 415 aa17.48■□□□□ 0.39
SHMT2-231ENST00000557433 CYP1A2P05177 515 aa17.48■□□□□ 0.39
SHMT2-231ENST00000557433 POTEJP0CG39 1038 aa17.48■□□□□ 0.39
SHMT2-231ENST00000557433 ITIH2P19823 946 aa17.48■□□□□ 0.39
SHMT2-231ENST00000557433 RWDD2BP57060 319 aa17.48■□□□□ 0.39
SHMT2-231ENST00000557433 MCCD1P59942 119 aaPredicted RBP17.48■□□□□ 0.39
SHMT2-231ENST00000557433 GALNTL6Q49A17 601 aa17.48■□□□□ 0.39
SHMT2-231ENST00000557433 EPC2Q52LR7 807 aa17.48■□□□□ 0.39
SHMT2-231ENST00000557433 SYCP3Q8IZU3 236 aa17.48■□□□□ 0.39
SHMT2-231ENST00000557433 EPS8L3Q8TE67 593 aaKnown RBP17.48■□□□□ 0.39
SHMT2-231ENST00000557433 PIGOQ8TEQ8 1089 aa17.48■□□□□ 0.39
SHMT2-231ENST00000557433 FBXO41Q8TF61 875 aa17.48■□□□□ 0.39
SHMT2-231ENST00000557433 DYDC1Q8WWB3 177 aa17.48■□□□□ 0.39
SHMT2-231ENST00000557433 KRT35Q92764 455 aa17.48■□□□□ 0.39
SHMT2-231ENST00000557433 DNAJC18Q9H819 358 aa17.48■□□□□ 0.39
SHMT2-231ENST00000557433 UBE2TQ9NPD8 197 aaPredicted RBP17.48■□□□□ 0.39
SHMT2-231ENST00000557433 BATF3Q9NR55 127 aa17.48■□□□□ 0.39
SHMT2-231ENST00000557433 KCNQ5Q9NR82 932 aa17.48■□□□□ 0.39
SHMT2-231ENST00000557433 LOXHD1Q8IVV2 1947 aa17.48■□□□□ 0.39
SHMT2-231ENST00000557433 RAD21O60216 631 aa17.47■□□□□ 0.39
SHMT2-231ENST00000557433 COG2Q14746 738 aa17.47■□□□□ 0.39
SHMT2-231ENST00000557433 MIGA2Q7L4E1 593 aa17.47■□□□□ 0.39
SHMT2-231ENST00000557433 PALB2Q86YC2 1186 aa17.47■□□□□ 0.39
SHMT2-231ENST00000557433 RPUSD2Q8IZ73 545 aaKnown RBP17.47■□□□□ 0.39
SHMT2-231ENST00000557433 ZDHHC15Q96MV8 337 aa17.47■□□□□ 0.39
SHMT2-231ENST00000557433 ZC3H12CQ9C0D7 883 aaKnown RBP17.47■□□□□ 0.39
SHMT2-231ENST00000557433 BAIAP2L1Q9UHR4 511 aa17.47■□□□□ 0.39
SHMT2-231ENST00000557433 GTF3C4Q9UKN8 822 aa17.47■□□□□ 0.39
SHMT2-231ENST00000557433 EPB41L3Q9Y2J2 1087 aaPredicted RBP17.47■□□□□ 0.39
SHMT2-231ENST00000557433 LRRN2O75325 713 aa17.47■□□□□ 0.39
SHMT2-231ENST00000557433 BMP3P12645 472 aa17.47■□□□□ 0.39
SHMT2-231ENST00000557433 NQO1P15559 274 aaKnown RBP17.47■□□□□ 0.39
SHMT2-231ENST00000557433 FGFR4P22455 802 aa17.47■□□□□ 0.39
SHMT2-231ENST00000557433 VAMP7P51809 220 aa17.47■□□□□ 0.39
SHMT2-231ENST00000557433 USH1GQ495M9 461 aa17.47■□□□□ 0.39
SHMT2-231ENST00000557433 EXOC3L1Q86VI1 746 aa17.47■□□□□ 0.39
SHMT2-231ENST00000557433 GRK7Q8WTQ7 553 aa17.47■□□□□ 0.39
SHMT2-231ENST00000557433 SLC20A1Q8WUM9 679 aa17.47■□□□□ 0.39
SHMT2-231ENST00000557433 MIEF2Q96C03 454 aa17.47■□□□□ 0.39
SHMT2-231ENST00000557433 GRAMD1AQ96CP6 724 aa17.47■□□□□ 0.39
SHMT2-231ENST00000557433 IDI2Q9BXS1 227 aa17.47■□□□□ 0.39
SHMT2-231ENST00000557433 ARL2BPQ9Y2Y0 163 aa17.47■□□□□ 0.39
SHMT2-231ENST00000557433 SMIM23A6NLE4 172 aa17.46■□□□□ 0.39
SHMT2-231ENST00000557433 PPEF1O14829 653 aaPredicted RBP17.46■□□□□ 0.39
SHMT2-231ENST00000557433 OPLAHO14841 1288 aa17.46■□□□□ 0.39
SHMT2-231ENST00000557433 SPOPO43791 374 aa17.46■□□□□ 0.39
SHMT2-231ENST00000557433 NDUFB10O96000 172 aa17.46■□□□□ 0.39
SHMT2-231ENST00000557433 PYGMP11217 842 aa17.46■□□□□ 0.39
SHMT2-231ENST00000557433 SKIV2L2P42285 1042 aaKnown RBP17.46■□□□□ 0.39
SHMT2-231ENST00000557433 MESDQ14696 234 aa17.46■□□□□ 0.39
SHMT2-231ENST00000557433 SIX1Q15475 284 aaPredicted RBP17.46■□□□□ 0.39
SHMT2-231ENST00000557433 FAM196AQ6ZSG2 479 aa17.46■□□□□ 0.39
SHMT2-231ENST00000557433 CEP128Q6ZU80 1094 aa17.46■□□□□ 0.39
SHMT2-231ENST00000557433 PTF1AQ7RTS3 328 aa17.46■□□□□ 0.39
SHMT2-231ENST00000557433 SIAH1Q8IUQ4 282 aa17.46■□□□□ 0.39
SHMT2-231ENST00000557433 FAM71AQ8IYT1 594 aa17.46■□□□□ 0.39
SHMT2-231ENST00000557433 MAB21L3Q8N8X9 362 aa17.46■□□□□ 0.39
SHMT2-231ENST00000557433 SUFUQ9UMX1 484 aa17.46■□□□□ 0.39
SHMT2-231ENST00000557433 EMSYQ7Z589 1322 aa17.46■□□□□ 0.39
SHMT2-231ENST00000557433 FSCN2O14926 492 aa17.45■□□□□ 0.38
SHMT2-231ENST00000557433 GAS7O60861 476 aa17.45■□□□□ 0.38
SHMT2-231ENST00000557433 GJB6O95452 261 aa17.45■□□□□ 0.38
SHMT2-231ENST00000557433 PPARDQ03181 441 aa17.45■□□□□ 0.38
SHMT2-231ENST00000557433 BNIP1Q12981 228 aa17.45■□□□□ 0.38
SHMT2-231ENST00000557433 IKQ13123 557 aaPredicted RBP17.45■□□□□ 0.38
SHMT2-231ENST00000557433 ZNF564Q8TBZ8 553 aaPredicted RBP17.45■□□□□ 0.38
SHMT2-231ENST00000557433 CKAP2Q8WWK9 683 aa17.45■□□□□ 0.38
SHMT2-231ENST00000557433 ARHGEF2Q92974 986 aaKnown RBP17.45■□□□□ 0.38
SHMT2-231ENST00000557433 BCAS3Q9H6U6 928 aa17.45■□□□□ 0.38
SHMT2-231ENST00000557433 LARSQ9P2J5 1176 aaKnown RBP17.45■□□□□ 0.38
SHMT2-231ENST00000557433 ACTL7BQ9Y614 415 aa17.45■□□□□ 0.38
SHMT2-231ENST00000557433 ARHGEF35A5YM69 484 aa17.45■□□□□ 0.38
SHMT2-231ENST00000557433 RARAP10276 462 aa17.45■□□□□ 0.38
SHMT2-231ENST00000557433 CCND1P24385 295 aa17.45■□□□□ 0.38
SHMT2-231ENST00000557433 POLD1P28340 1107 aa17.45■□□□□ 0.38
SHMT2-231ENST00000557433 GBP2P32456 591 aaPredicted RBP17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms