RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 MARCH2Q9P0N8 246 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 APEX2Q9UBZ4 518 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 ADAM21Q9UKJ8 722 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 RRP15Q9Y3B9 282 aaKnown RBP3.26□□□□□ -1.89
SLIRP-208ENST00000556956 NUB1Q9Y5A7 615 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 PXDNLA1KZ92 1463 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 DLC1Q96QB1 1528 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 KNDC1Q76NI1 1749 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 H7BY64 318 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 MAP2K7O14733 419 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 CLGNO14967 610 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 SUSD5O60279 629 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 STX10O60499 249 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 JAK2O60674 1132 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 SEC31AO94979 1220 aaKnown RBP3.25□□□□□ -1.89
SLIRP-208ENST00000556956 NTRK1P04629 796 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 SCG5P05408 212 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 ITGAVP06756 1048 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 THBDP07204 575 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 SNRPB2P08579 225 aaKnown RBP3.25□□□□□ -1.89
SLIRP-208ENST00000556956 CYP2C8P10632 490 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 CMA1P23946 247 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 DNAJA1P31689 397 aaKnown RBP3.25□□□□□ -1.89
SLIRP-208ENST00000556956 LTBRP36941 435 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 ETFBP38117 255 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 USP8P40818 1118 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 ECI1P42126 302 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 SLC6A11P48066 632 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 EIF5P55010 431 aaKnown RBP3.25□□□□□ -1.89
SLIRP-208ENST00000556956 GNG11P61952 73 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 ST5P78524 1137 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 PURAQ00577 322 aaKnown RBP3.25□□□□□ -1.89
SLIRP-208ENST00000556956 CEBPZQ03701 1054 aaKnown RBP3.25□□□□□ -1.89
SLIRP-208ENST00000556956 STK38Q15208 465 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 LONRF2Q1L5Z9 754 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 KRTAP15-1Q3LI76 137 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 BEND3Q5T5X7 828 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 ACBD5Q5T8D3 534 aaPredicted RBP3.25□□□□□ -1.89
SLIRP-208ENST00000556956 SYNE3Q6ZMZ3 975 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 ETV3LQ6ZN32 361 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 CEP68Q76N32 757 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 RSRC2Q7L4I2 434 aaKnown RBP3.25□□□□□ -1.89
SLIRP-208ENST00000556956 BRAPQ7Z569 592 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 CCDC91Q7Z6B0 441 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 SRGAP1Q7Z6B7 1085 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 RPAINQ86UA6 219 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 AACSQ86V21 672 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 FAM124AQ86V42 546 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 RIOX2Q8IUF8 465 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 SUGP1Q8IWZ8 645 aaKnown RBP3.25□□□□□ -1.89
SLIRP-208ENST00000556956 REXO1L1PQ8IX06 675 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 EFCAB13Q8IY85 973 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 CTCFLQ8NI51 663 aaPredicted RBP3.25□□□□□ -1.89
SLIRP-208ENST00000556956 FAM71BQ8TC56 605 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 PLEKHO2Q8TD55 490 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 FNIP1Q8TF40 1166 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 FRS2Q8WU20 508 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 KCTD13Q8WZ19 329 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 ZNF274Q96GC6 653 aaPredicted RBP3.25□□□□□ -1.89
SLIRP-208ENST00000556956 SGSM3Q96HU1 749 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 GMLQ99445 158 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 NCAPGQ9BPX3 1015 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 YIPF4Q9BSR8 244 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 FSD1Q9BTV5 496 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 UTP14AQ9BVJ6 771 aaKnown RBP3.25□□□□□ -1.89
SLIRP-208ENST00000556956 FUT8Q9BYC5 575 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 GOLPH3LQ9H4A5 285 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 BTG4Q9NY30 223 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 C9orf78Q9NZ63 289 aaPredicted RBP3.25□□□□□ -1.89
SLIRP-208ENST00000556956 NTMQ9P121 344 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 VPS18Q9P253 973 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 PPP1R1BQ9UD71 204 aaPredicted RBP3.25□□□□□ -1.89
SLIRP-208ENST00000556956 HOOK1Q9UJC3 728 aaKnown RBP3.25□□□□□ -1.89
SLIRP-208ENST00000556956 PCDHA7Q9UN72 937 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 PPP2R2CQ9Y2T4 447 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 JRKLQ9Y4A0 524 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 MRFAP1Q9Y605 127 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 PLEKHG2Q9H7P9 1386 aa3.25□□□□□ -1.89
SLIRP-208ENST00000556956 SETD1AO15047 1707 aaKnown RBP3.24□□□□□ -1.89
SLIRP-208ENST00000556956 ARHGEF28Q8N1W1 1705 aaKnown RBP3.24□□□□□ -1.89
SLIRP-208ENST00000556956 AGLP35573 1532 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 A0A087WUV0 522 aaPredicted RBP3.24□□□□□ -1.89
SLIRP-208ENST00000556956 PTPDC1A2A3K4 754 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 SH3D21A4FU49 640 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 VWA3AA6NCI4 1184 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 A6NNZ2 444 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 EIF3CLB5ME19 914 aaKnown RBP3.24□□□□□ -1.89
SLIRP-208ENST00000556956 HGSO14964 777 aaPredicted RBP3.24□□□□□ -1.89
SLIRP-208ENST00000556956 SPTLC2O15270 562 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 KIF5CO60282 957 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 PPP1R11O60927 126 aaPredicted RBP3.24□□□□□ -1.89
SLIRP-208ENST00000556956 TAF5LO75529 589 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 CYP7B1O75881 506 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 DGKIO75912 1065 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 ZNF202O95125 648 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 DDX58O95786 925 aaKnown RBP3.24□□□□□ -1.89
SLIRP-208ENST00000556956 ONECUT2O95948 504 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 APPP05067 770 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 FGRP09769 529 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 ATF2P15336 505 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms