RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	C6orf89	Q6UWU4	347 aa		13.52	□□□□□ -0.25
RNF4-222	ENST00000541204	MAGOHB	Q96A72	148 aa	Known RBP	13.52	□□□□□ -0.25
RNF4-222	ENST00000541204	KIFC3	Q9BVG8	833 aa		13.52	□□□□□ -0.25
RNF4-222	ENST00000541204	PICK1	Q9NRD5	415 aa		13.52	□□□□□ -0.25
RNF4-222	ENST00000541204	ODF2L	Q9ULJ1	636 aa		13.52	□□□□□ -0.25
RNF4-222	ENST00000541204	ATP8A1	Q9Y2Q0	1164 aa		13.52	□□□□□ -0.25
RNF4-222	ENST00000541204	GTPBP10	A4D1E9	387 aa	Known RBP	13.51	□□□□□ -0.25
RNF4-222	ENST00000541204	CCNE2	O96020	404 aa		13.51	□□□□□ -0.25
RNF4-222	ENST00000541204	SOX5	P35711	763 aa		13.51	□□□□□ -0.25
RNF4-222	ENST00000541204	POU5F1	Q01860	360 aa	Known RBP	13.51	□□□□□ -0.25
RNF4-222	ENST00000541204	DRAP1	Q14919	205 aa	Predicted RBP	13.51	□□□□□ -0.25
RNF4-222	ENST00000541204	ARHGAP44	Q17R89	818 aa		13.51	□□□□□ -0.25
RNF4-222	ENST00000541204	FAM102B	Q5T8I3	360 aa		13.51	□□□□□ -0.25
RNF4-222	ENST00000541204	STXBP4	Q6ZWJ1	553 aa		13.51	□□□□□ -0.25
RNF4-222	ENST00000541204	SEC14L1	Q92503	715 aa		13.51	□□□□□ -0.25
RNF4-222	ENST00000541204	CABS1	Q96KC9	395 aa		13.51	□□□□□ -0.25
RNF4-222	ENST00000541204	CEP89	Q96ST8	783 aa		13.51	□□□□□ -0.25
RNF4-222	ENST00000541204	PDCD2L	Q9BRP1	358 aa		13.51	□□□□□ -0.25
RNF4-222	ENST00000541204	DDX20	Q9UHI6	824 aa	Known RBP	13.51	□□□□□ -0.25
RNF4-222	ENST00000541204	DNAJC12	Q9UKB3	198 aa		13.51	□□□□□ -0.25
RNF4-222	ENST00000541204	SRRM3	A6NNA2	597 aa	Predicted RBP	13.51	□□□□□ -0.25
RNF4-222	ENST00000541204	SLC16A4	O15374	487 aa		13.51	□□□□□ -0.25
RNF4-222	ENST00000541204	DDX3Y	O15523	660 aa	Known RBP	13.51	□□□□□ -0.25
RNF4-222	ENST00000541204	FMO5	P49326	533 aa		13.51	□□□□□ -0.25
RNF4-222	ENST00000541204	PEX3	P56589	373 aa		13.51	□□□□□ -0.25
RNF4-222	ENST00000541204	BACE1	P56817	501 aa		13.51	□□□□□ -0.25
RNF4-222	ENST00000541204	CCDC13	Q8IYE1	715 aa		13.51	□□□□□ -0.25
RNF4-222	ENST00000541204	TRPM4	Q8TD43	1214 aa		13.51	□□□□□ -0.25
RNF4-222	ENST00000541204	CBWD1	Q9BRT8	395 aa		13.51	□□□□□ -0.25
RNF4-222	ENST00000541204	PXMP2	Q9NR77	195 aa		13.51	□□□□□ -0.25
RNF4-222	ENST00000541204	FAM114A2	Q9NRY5	505 aa		13.51	□□□□□ -0.25
RNF4-222	ENST00000541204	SEL1L	Q9UBV2	794 aa		13.51	□□□□□ -0.25
RNF4-222	ENST00000541204	GOLGA8IP	A6NC78	632 aa		13.5	□□□□□ -0.25
RNF4-222	ENST00000541204	GOLGA8J	A6NMD2	632 aa		13.5	□□□□□ -0.25
RNF4-222	ENST00000541204	BCR	P11274	1271 aa		13.5	□□□□□ -0.25
RNF4-222	ENST00000541204	PTPRA	P18433	802 aa		13.5	□□□□□ -0.25
RNF4-222	ENST00000541204	RPS12	P25398	132 aa	Known RBP	13.5	□□□□□ -0.25
RNF4-222	ENST00000541204	ACTN3	Q08043	901 aa	Predicted RBP	13.5	□□□□□ -0.25
RNF4-222	ENST00000541204	ZNF211	Q13398	564 aa	Predicted RBP	13.5	□□□□□ -0.25
RNF4-222	ENST00000541204	XKR9	Q5GH70	373 aa		13.5	□□□□□ -0.25
RNF4-222	ENST00000541204	AGBL2	Q5U5Z8	902 aa		13.5	□□□□□ -0.25
RNF4-222	ENST00000541204	ATP8B4	Q8TF62	1192 aa		13.5	□□□□□ -0.25
RNF4-222	ENST00000541204	CTNNBL1	Q8WYA6	563 aa	Predicted RBP	13.5	□□□□□ -0.25
RNF4-222	ENST00000541204	RFFL	Q8WZ73	363 aa		13.5	□□□□□ -0.25
RNF4-222	ENST00000541204	RAPGEF5	Q92565	580 aa		13.5	□□□□□ -0.25
RNF4-222	ENST00000541204	ARHGEF26	Q96DR7	871 aa		13.5	□□□□□ -0.25
RNF4-222	ENST00000541204	ERVK-5	Q9HDB9	667 aa		13.5	□□□□□ -0.25
RNF4-222	ENST00000541204	SEPT11	Q9NVA2	429 aa	Known RBP	13.5	□□□□□ -0.25
RNF4-222	ENST00000541204	TAS2R14	Q9NYV8	317 aa		13.5	□□□□□ -0.25
RNF4-222	ENST00000541204	LARS	Q9P2J5	1176 aa	Known RBP	13.5	□□□□□ -0.25
RNF4-222	ENST00000541204	ATP8B3	O60423	1300 aa		13.5	□□□□□ -0.25
RNF4-222	ENST00000541204	CCDC169	A6NNP5	214 aa		13.5	□□□□□ -0.25
RNF4-222	ENST00000541204	LMNB1	P20700	586 aa		13.5	□□□□□ -0.25
RNF4-222	ENST00000541204	USP8	P40818	1118 aa		13.5	□□□□□ -0.25
RNF4-222	ENST00000541204	IFFO1	Q0D2I5	559 aa		13.5	□□□□□ -0.25
RNF4-222	ENST00000541204	SCYL3	Q8IZE3	742 aa		13.5	□□□□□ -0.25
RNF4-222	ENST00000541204	ZNF280C	Q8ND82	737 aa		13.5	□□□□□ -0.25
RNF4-222	ENST00000541204	FMO2	Q99518	471 aa		13.5	□□□□□ -0.25
RNF4-222	ENST00000541204	STK33	Q9BYT3	514 aa		13.5	□□□□□ -0.25
RNF4-222	ENST00000541204	GPR88	Q9GZN0	384 aa		13.5	□□□□□ -0.25
RNF4-222	ENST00000541204	TMEM253	P0C7T8	217 aa		13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	PPAT	Q06203	517 aa		13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	SWT1	Q5T5J6	900 aa	Known RBP	13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	PALB2	Q86YC2	1186 aa		13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	KCTD17	Q8N5Z5	321 aa		13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	NLGN2	Q8NFZ4	835 aa		13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	GLG1	Q92896	1179 aa		13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	MTFR1L	Q9H019	292 aa		13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	THAP2	Q9H0W7	228 aa		13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	KCND2	Q9NZV8	630 aa		13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	GGA2	Q9UJY4	613 aa		13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	PTEN	P60484	403 aa		13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	MYL7	Q01449	175 aa		13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	DR1	Q01658	176 aa		13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	SPRED3	Q2MJR0	410 aa		13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	CCDC121	Q6ZUS5	278 aa		13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	MDM1	Q8TC05	714 aa		13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	ELMO3	Q96BJ8	720 aa		13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	GGA3	Q9NZ52	723 aa		13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	TTC7A	Q9ULT0	858 aa	Predicted RBP	13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	NCAN	O14594	1321 aa		13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	GCLM	P48507	274 aa		13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	DCAF15	Q66K64	600 aa		13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	AADACL2	Q6P093	401 aa		13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	HAUS6	Q7Z4H7	955 aa		13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	TEX2	Q8IWB9	1127 aa		13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	SEC16B	Q96JE7	1060 aa		13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	OSBPL7	Q9BZF2	842 aa		13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	INTS2	Q9H0H0	1204 aa	Known RBP	13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	TBC1D22B	Q9NU19	505 aa		13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	TMOD4	Q9NZQ9	345 aa		13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	COG5	Q9UP83	839 aa		13.49	□□□□□ -0.25
RNF4-222	ENST00000541204	CAND2	O75155	1236 aa		13.48	□□□□□ -0.25
RNF4-222	ENST00000541204	PPFIA2	O75334	1257 aa		13.48	□□□□□ -0.25
RNF4-222	ENST00000541204	SHBG	P04278	402 aa		13.48	□□□□□ -0.25
RNF4-222	ENST00000541204	NR3C2	P08235	984 aa		13.48	□□□□□ -0.25
RNF4-222	ENST00000541204	PLS3	P13797	630 aa		13.48	□□□□□ -0.25
RNF4-222	ENST00000541204	MUT	P22033	750 aa		13.48	□□□□□ -0.25
RNF4-222	ENST00000541204	BFSP1	Q12934	665 aa		13.48	□□□□□ -0.25
RNF4-222	ENST00000541204	NEK9	Q8TD19	979 aa		13.48	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 32 ms