RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-208	ENST00000540447	DNAJC3	Q13217	504 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	ZBED8	Q8IZ13	594 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	ABCF3	Q9NUQ8	709 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	MCM9	Q9NXL9	1143 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	ARPC4-TTLL3	A0A0A6YYG9	625 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	TCN1	P20061	433 aa	Predicted RBP	9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	TAC1	P20366	129 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	NFKBIA	P25963	317 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	CTDSPL2	Q05D32	466 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	TRAF2	Q12933	501 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	TRMT5	Q32P41	509 aa	Known RBP	9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	TAF1B	Q53T94	588 aa	Predicted RBP	9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	ATG14	Q6ZNE5	492 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	ERICH1	Q86X53	443 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	STX12	Q86Y82	276 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	PPM1N	Q8N819	430 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	RTL3	Q8N8U3	475 aa	Known RBP	9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	NUDT16	Q96DE0	195 aa	Known RBP	9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	BRIP1	Q9BX63	1249 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	CEP72	Q9P209	647 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	COPG2	Q9UBF2	871 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	GGA2	Q9UJY4	613 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	RBM47	A0AV96	593 aa	Known RBP	9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	GOLGA8S	H3BPF8	625 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	LRRN2	O75325	713 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	SRGAP2C	P0DJJ0	459 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	SRGAP2B	P0DMP2	458 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	HSPD1	P10809	573 aa	Known RBP	9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	CDH2	P19022	906 aa	Predicted RBP	9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	POLR2E	P19388	210 aa	Known RBP	9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	USP46	P62068	366 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	PTK2	Q05397	1052 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	PDZD4	Q76G19	769 aa	Predicted RBP	9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	BLID	Q8IZY5	108 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	ZBTB8B	Q8NAP8	495 aa	Predicted RBP	9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	XAGE3	Q8WTP9	111 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	HEY2	Q9UBP5	337 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	ABCC12	Q96J65	1359 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	OPLAH	O14841	1288 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	LGR5	O75473	907 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	POLR2B	P30876	1174 aa	Known RBP	9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	COPA	P53621	1224 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	PDIA2	Q13087	525 aa	Known RBP	9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	PRKG1	Q13976	671 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	CAPRIN1	Q14444	709 aa	Known RBP	9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	MIS18BP1	Q6P0N0	1132 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	ADSSL1	Q8N142	457 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	C4orf33	Q8N1A6	199 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	EFHD2	Q96C19	240 aa	Predicted RBP	9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	AGBL1	Q96MI9	1066 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	VPS11	Q9H270	941 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	EPS8L2	Q9H6S3	715 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	SRPRB	Q9Y5M8	271 aa	Known RBP	9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	CCDC61	Q9Y6R9	512 aa		9.26	□□□□□ -0.93
YBX3-208	ENST00000540447	PDZK1P1	A8MUH7	402 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447		M0R2C6	588 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	C21orf2	O43822	256 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	CLASP2	O75122	1294 aa	Known RBP	9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	ADCY7	P51828	1080 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	NLRP11	P59045	1033 aa	Known RBP	9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	YWHAE	P62258	255 aa	Known RBP	9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	SH3BP5L	Q7L8J4	393 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	CMTR1	Q8N1G2	835 aa	Known RBP	9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	UBASH3B	Q8TF42	649 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	GDPD5	Q8WTR4	605 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	JADE3	Q92613	823 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	C19orf60	Q96EN9	201 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	NARS2	Q96I59	477 aa	Known RBP	9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	MAGEB18	Q96M61	343 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	NLRP4	Q96MN2	994 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	TRIM51	Q9BSJ1	452 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	OSBPL10	Q9BXB5	764 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	OSBPL3	Q9H4L5	887 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	TRNAU1AP	Q9NX07	287 aa	Known RBP	9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	GCNT4	Q9P109	453 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	TRIM10	Q9UDY6	481 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	MARCO	Q9UEW3	520 aa	Predicted RBP	9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	BPIFB4	P59827	614 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	ZMYM1	Q5SVZ6	1142 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	LRRC6	Q86X45	466 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	CCDC60	Q8IWA6	550 aa	Predicted RBP	9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	ARHGEF1	Q92888	912 aa	Known RBP	9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	RMND5B	Q96G75	393 aa	Predicted RBP	9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	VPS50	Q96JG6	964 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	CNDP1	Q96KN2	507 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	ASPSCR1	Q9BZE9	553 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	SLC52A1	Q9NWF4	448 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	BTN3A3	O00478	584 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	PER1	O15534	1290 aa	Predicted RBP	9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	GGPS1	O95749	300 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	PYGM	P11217	842 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	PSMC6	P62333	389 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	HABP4	Q5JVS0	413 aa	Known RBP	9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	PI16	Q6UXB8	463 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	RAD9B	Q6WBX8	426 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	LRRC49	Q8IUZ0	686 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	ZNF654	Q8IZM8	581 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	RBM46	Q8TBY0	533 aa	Known RBP	9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	MAGEC3	Q8TD91	643 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	ALKBH8	Q96BT7	664 aa	Known RBP	9.25	□□□□□ -0.93

Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms