RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 CTNNAL1Q9UBT7 734 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 C15orf41Q9Y2V0 281 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 PARP4Q9UKK3 1724 aaKnown RBP13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 TISP43B9A030 160 aa13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 TARSP26639 723 aaKnown RBP13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 ALDH3A1P30838 453 aa13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 ADCY2Q08462 1091 aa13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 KAZNQ674X7 775 aa13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 SP8Q8IXZ3 490 aa13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 SUPT20HQ8NEM7 779 aa13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 FAM84AQ96KN4 292 aa13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 C9orf72Q96LT7 481 aa13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 ERP44Q9BS26 406 aa13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 PPP1R9AQ9ULJ8 1098 aa13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 PRR12Q9ULL5 1215 aa13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 EPC2Q52LR7 807 aa13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 VPS52Q8N1B4 723 aa13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 STMN2Q93045 179 aa13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 ERP27Q96DN0 273 aa13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 MTMR9Q96QG7 549 aa13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 ZNF341Q9BYN7 854 aa13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 SLITRK6Q9H5Y7 841 aa13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 ALG13Q9NP73 1137 aaKnown RBP13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 BZW2Q9Y6E2 419 aaKnown RBP13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 MSH4O15457 936 aa13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 KYNUQ16719 465 aa13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 HHATQ5VTY9 493 aa13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 SPATA21Q7Z572 469 aa13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 NUDCD1Q96RS6 583 aa13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 KIFC3Q9BVG8 833 aa13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 ZCWPW1Q9H0M4 648 aa13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 RAVER2Q9HCJ3 691 aaKnown RBP13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 LARSQ9P2J5 1176 aaKnown RBP13.22□□□□□ -0.29
SHROOM3-208ENST00000486758 NUP98P52948 1817 aa13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 SLC16A4O15374 487 aa13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 TNNI1P19237 187 aa13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 CTNNA2P26232 953 aa13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 ZRSR2Q15696 482 aaKnown RBP13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 SGO2Q562F6 1265 aa13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 PROM2Q8N271 834 aa13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 CHURC1Q8WUH1 139 aa13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 LXNQ9BS40 222 aa13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 TEKT3Q9BXF9 490 aa13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 THAP2Q9H0W7 228 aa13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 METTL14Q9HCE5 456 aaKnown RBP13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 USP20Q9Y2K6 914 aa13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 USH1CQ9Y6N9 552 aa13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 PASKQ96RG2 1323 aa13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 hCG_1984214I3L0E3 225 aa13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 EML1O00423 815 aa13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 PJA2O43164 708 aa13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 ONECUT3O60422 494 aaPredicted RBP13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 BAG2O95816 211 aa13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 FOSP01100 380 aaPredicted RBP13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 PPP1R18Q6NYC8 613 aa13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 LRRC55Q6ZSA7 311 aa13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 ZC3H18Q86VM9 953 aaKnown RBP13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 ZNF713Q8N859 430 aaPredicted RBP13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 TMEM39BQ9GZU3 492 aa13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 ACP6Q9NPH0 428 aa13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 IRAK4Q9NWZ3 460 aa13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 SLC12A6Q9UHW9 1150 aa13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 TTC7AQ9ULT0 858 aaPredicted RBP13.21□□□□□ -0.29
SHROOM3-208ENST00000486758 PLSCR1O15162 318 aa13.21□□□□□ -0.3
SHROOM3-208ENST00000486758 FERP16591 822 aa13.21□□□□□ -0.3
SHROOM3-208ENST00000486758 UBAP2Q5T6F2 1119 aaKnown RBP13.21□□□□□ -0.3
SHROOM3-208ENST00000486758 EEPD1Q7L9B9 569 aa13.21□□□□□ -0.3
SHROOM3-208ENST00000486758 PABPC3Q9H361 631 aaKnown RBP13.21□□□□□ -0.3
SHROOM3-208ENST00000486758 PCDHGC5Q9Y5F6 944 aa13.21□□□□□ -0.3
SHROOM3-208ENST00000486758 CEP350Q5VT06 3117 aa13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 ECEL1O95672 775 aa13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 DNAJC3Q13217 504 aa13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 APOBEC3HQ6NTF7 200 aaKnown RBP13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 CCT6BQ92526 530 aa13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 MASTLQ96GX5 879 aa13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 POP1Q99575 1024 aaKnown RBP13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 KDM4CQ9H3R0 1056 aa13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 HAO1Q9UJM8 370 aa13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 COL22A1Q8NFW1 1626 aaPredicted RBP13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 IPO5O00410 1097 aaKnown RBP13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 FTLP02792 175 aaPredicted RBP13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 KRT16P08779 473 aa13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 BCRP11274 1271 aa13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 CREB1P16220 341 aa13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 ATP5DP30049 168 aa13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 CTCFP49711 727 aaPredicted RBP13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 RASIP1Q5U651 963 aa13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 BZW1Q7L1Q6 419 aaKnown RBP13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 FAM228AQ86W67 206 aa13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 FLAD1Q8NFF5 587 aa13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 AGBL1Q96MI9 1066 aa13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 CEP63Q96MT8 703 aa13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 TRIM4Q9C037 500 aa13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 GPRC5CQ9NQ84 441 aa13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 CFAP73A6NFT4 308 aa13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 RASA4BC9J798 803 aa13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 RASA4O43374 803 aa13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 IL1R1P14778 569 aa13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 ZNF662Q6ZS27 426 aa13.2□□□□□ -0.3
SHROOM3-208ENST00000486758 CD302Q8IX05 232 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms