RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 LSM14BQ9BX40 385 aaKnown RBP4.64□□□□□ -1.67
VPS50-216ENST00000484954 FAM126AQ9BYI3 521 aaPredicted RBP4.64□□□□□ -1.67
VPS50-216ENST00000484954 IFT22Q9H7X7 185 aa4.64□□□□□ -1.67
VPS50-216ENST00000484954 AURKAIP1Q9NWT8 199 aaPredicted RBP4.64□□□□□ -1.67
VPS50-216ENST00000484954 GPRC5BQ9NZH0 403 aa4.64□□□□□ -1.67
VPS50-216ENST00000484954 CDY2AQ9Y6F7 541 aa4.64□□□□□ -1.67
VPS50-216ENST00000484954 RPS6KA4O75676 772 aa4.63□□□□□ -1.67
VPS50-216ENST00000484954 NR4A1P22736 598 aa4.63□□□□□ -1.67
VPS50-216ENST00000484954 CANXP27824 592 aaKnown RBP4.63□□□□□ -1.67
VPS50-216ENST00000484954 MASP1P48740 699 aa4.63□□□□□ -1.67
VPS50-216ENST00000484954 GPR15P49685 360 aa4.63□□□□□ -1.67
VPS50-216ENST00000484954 CSRP2Q16527 193 aa4.63□□□□□ -1.67
VPS50-216ENST00000484954 MFSD5Q6N075 450 aa4.63□□□□□ -1.67
VPS50-216ENST00000484954 LMBR1LQ6UX01 489 aa4.63□□□□□ -1.67
VPS50-216ENST00000484954 DDX46Q7L014 1031 aaKnown RBP4.63□□□□□ -1.67
VPS50-216ENST00000484954 XYLT1Q86Y38 959 aa4.63□□□□□ -1.67
VPS50-216ENST00000484954 ZNF483Q8TF39 744 aaPredicted RBP4.63□□□□□ -1.67
VPS50-216ENST00000484954 ST8SIA2Q92186 375 aa4.63□□□□□ -1.67
VPS50-216ENST00000484954 LARP4BQ92615 738 aaKnown RBP4.63□□□□□ -1.67
VPS50-216ENST00000484954 CLIP3Q96DZ5 547 aa4.63□□□□□ -1.67
VPS50-216ENST00000484954 TTC1Q99614 292 aa4.63□□□□□ -1.67
VPS50-216ENST00000484954 PARPBPQ9NWS1 579 aa4.63□□□□□ -1.67
VPS50-216ENST00000484954 TRPS1Q9UHF7 1281 aa4.63□□□□□ -1.67
VPS50-216ENST00000484954 REXO2Q9Y3B8 237 aaKnown RBP4.63□□□□□ -1.67
VPS50-216ENST00000484954 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.62□□□□□ -1.67
VPS50-216ENST00000484954 PRAMEF4O60810 478 aa4.62□□□□□ -1.67
VPS50-216ENST00000484954 GNAT2P19087 354 aa4.62□□□□□ -1.67
VPS50-216ENST00000484954 XPAP23025 273 aaPredicted RBP4.62□□□□□ -1.67
VPS50-216ENST00000484954 HSD3B2P26439 372 aa4.62□□□□□ -1.67
VPS50-216ENST00000484954 ZFP36P26651 326 aaKnown RBP4.62□□□□□ -1.67
VPS50-216ENST00000484954 IL12RB1P42701 662 aa4.62□□□□□ -1.67
VPS50-216ENST00000484954 MRPL49Q13405 166 aaKnown RBP4.62□□□□□ -1.67
VPS50-216ENST00000484954 Q6ZPA2 131 aa4.62□□□□□ -1.67
VPS50-216ENST00000484954 GLB1L2Q8IW92 636 aa4.62□□□□□ -1.67
VPS50-216ENST00000484954 AFAP1L2Q8N4X5 818 aa4.62□□□□□ -1.67
VPS50-216ENST00000484954 OR14C36Q8NHC7 312 aa4.62□□□□□ -1.67
VPS50-216ENST00000484954 TGFBRAP1Q8WUH2 860 aa4.62□□□□□ -1.67
VPS50-216ENST00000484954 CPPED1Q9BRF8 314 aaPredicted RBP4.62□□□□□ -1.67
VPS50-216ENST00000484954 CAAP1Q9H8G2 361 aa4.62□□□□□ -1.67
VPS50-216ENST00000484954 TMA7Q9Y2S6 64 aaKnown RBP4.62□□□□□ -1.67
VPS50-216ENST00000484954 ZMYM3Q14202 1370 aa4.62□□□□□ -1.67
VPS50-216ENST00000484954 WNT10BO00744 389 aa4.61□□□□□ -1.67
VPS50-216ENST00000484954 NRP1O14786 923 aa4.61□□□□□ -1.67
VPS50-216ENST00000484954 ADCY6O43306 1168 aa4.61□□□□□ -1.67
VPS50-216ENST00000484954 ZEB2O60315 1214 aa4.61□□□□□ -1.67
VPS50-216ENST00000484954 NRP2O60462 931 aa4.61□□□□□ -1.67
VPS50-216ENST00000484954 MFAP3LO75121 409 aa4.61□□□□□ -1.67
VPS50-216ENST00000484954 IPO13O94829 963 aaKnown RBP4.61□□□□□ -1.67
VPS50-216ENST00000484954 EYA4O95677 639 aa4.61□□□□□ -1.67
VPS50-216ENST00000484954 LTA4HP09960 611 aaKnown RBP4.61□□□□□ -1.67
VPS50-216ENST00000484954 KRT4P19013 534 aa4.61□□□□□ -1.67
VPS50-216ENST00000484954 ATXN1P54253 815 aaKnown RBP4.61□□□□□ -1.67
VPS50-216ENST00000484954 NRG3P56975 720 aa4.61□□□□□ -1.67
VPS50-216ENST00000484954 CCT2P78371 535 aaKnown RBP4.61□□□□□ -1.67
VPS50-216ENST00000484954 DUSP2Q05923 314 aa4.61□□□□□ -1.67
VPS50-216ENST00000484954 STAT4Q14765 748 aa4.61□□□□□ -1.67
VPS50-216ENST00000484954 FSCN1Q16658 493 aaKnown RBP4.61□□□□□ -1.67
VPS50-216ENST00000484954 CCDC178Q5BJE1 867 aa4.61□□□□□ -1.67
VPS50-216ENST00000484954 RABL3Q5HYI8 236 aa4.61□□□□□ -1.67
VPS50-216ENST00000484954 ANKS6Q68DC2 871 aa4.61□□□□□ -1.67
VPS50-216ENST00000484954 NAIF1Q69YI7 327 aaPredicted RBP4.61□□□□□ -1.67
VPS50-216ENST00000484954 APBB1IPQ7Z5R6 666 aaPredicted RBP4.61□□□□□ -1.67
VPS50-216ENST00000484954 LDLRAD3Q86YD5 345 aa4.61□□□□□ -1.67
VPS50-216ENST00000484954 OR52N2Q8NGI0 321 aa4.61□□□□□ -1.67
VPS50-216ENST00000484954 TSPEARQ8WU66 669 aa4.61□□□□□ -1.67
VPS50-216ENST00000484954 VOPP1Q96AW1 172 aa4.61□□□□□ -1.67
VPS50-216ENST00000484954 IL17RAQ96F46 866 aa4.61□□□□□ -1.67
VPS50-216ENST00000484954 WNT8AQ9H1J5 351 aa4.61□□□□□ -1.67
VPS50-216ENST00000484954 EPC1Q9H2F5 836 aa4.61□□□□□ -1.67
VPS50-216ENST00000484954 ZNF768Q9H5H4 540 aaKnown RBP4.61□□□□□ -1.67
VPS50-216ENST00000484954 DPP7Q9UHL4 492 aa4.61□□□□□ -1.67
VPS50-216ENST00000484954 GOLGA6L6A8MZA4 724 aa4.6□□□□□ -1.67
VPS50-216ENST00000484954 DNAJC6O75061 913 aa4.6□□□□□ -1.67
VPS50-216ENST00000484954 ENPP1P22413 925 aa4.6□□□□□ -1.67
VPS50-216ENST00000484954 CTSSP25774 331 aa4.6□□□□□ -1.67
VPS50-216ENST00000484954 GZMKP49863 264 aa4.6□□□□□ -1.67
VPS50-216ENST00000484954 SESN3P58005 492 aa4.6□□□□□ -1.67
VPS50-216ENST00000484954 CDK17Q00537 523 aa4.6□□□□□ -1.67
VPS50-216ENST00000484954 UGT8Q16880 541 aa4.6□□□□□ -1.67
VPS50-216ENST00000484954 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.6□□□□□ -1.67
VPS50-216ENST00000484954 KRTAP5-11Q6L8G4 156 aa4.6□□□□□ -1.67
VPS50-216ENST00000484954 MDM1Q8TC05 714 aa4.6□□□□□ -1.67
VPS50-216ENST00000484954 CHAC2Q8WUX2 184 aa4.6□□□□□ -1.67
VPS50-216ENST00000484954 CEP95Q96GE4 821 aa4.6□□□□□ -1.67
VPS50-216ENST00000484954 AGAP2Q99490 1192 aa4.6□□□□□ -1.67
VPS50-216ENST00000484954 KCNG1Q9UIX4 513 aa4.6□□□□□ -1.67
VPS50-216ENST00000484954 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.6□□□□□ -1.67
VPS50-216ENST00000484954 SORCS3Q9UPU3 1222 aa4.6□□□□□ -1.67
VPS50-216ENST00000484954 APOBEC2Q9Y235 224 aaKnown RBP4.6□□□□□ -1.67
VPS50-216ENST00000484954 AHRRA9YTQ3 701 aa4.59□□□□□ -1.67
VPS50-216ENST00000484954 LEFTY2O00292 366 aa4.59□□□□□ -1.67
VPS50-216ENST00000484954 ITGA10O75578 1167 aa4.59□□□□□ -1.67
VPS50-216ENST00000484954 ADH4P08319 380 aa4.59□□□□□ -1.67
VPS50-216ENST00000484954 POU3F3P20264 500 aaPredicted RBP4.59□□□□□ -1.67
VPS50-216ENST00000484954 SOX5P35711 763 aa4.59□□□□□ -1.67
VPS50-216ENST00000484954 WNT3AP56704 352 aa4.59□□□□□ -1.67
VPS50-216ENST00000484954 SCAND1P57086 179 aa4.59□□□□□ -1.67
VPS50-216ENST00000484954 FAM189BP81408 668 aa4.59□□□□□ -1.67
VPS50-216ENST00000484954 TMPRSS15P98073 1019 aa4.59□□□□□ -1.67
VPS50-216ENST00000484954 DCAF17Q5H9S7 520 aaPredicted RBP4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms