RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 IQCA1Q86XH1 822 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 ECHDC2Q86YB7 292 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 SAMD3Q8N6K7 520 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 SMARCC2Q8TAQ2 1214 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 LPPQ93052 612 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 EVI5LQ96CN4 794 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 ITPKCQ96DU7 683 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 PGBD1Q96JS3 809 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 KLHL5Q96PQ7 755 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 ETNK1Q9HBU6 452 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 C1orf112Q9NSG2 853 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 NCDNQ9UBB6 729 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 DNAJB4Q9UDY4 337 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 SIT1Q9Y3P8 196 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 DYNC1LI1Q9Y6G9 523 aaKnown RBP6.04□□□□□ -1.44
PTPN4-209ENST00000469511 TAF6LQ9Y6J9 622 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 F5P12259 2224 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 ATG2BQ96BY7 2078 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 IGF2RP11717 2491 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 PNMA6FA0A0J9YX94 578 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 FSD2A1L4K1 749 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 DDX39AO00148 427 aaKnown RBP6.03□□□□□ -1.44
PTPN4-209ENST00000469511 KINO60870 393 aaKnown RBP6.03□□□□□ -1.44
PTPN4-209ENST00000469511 RFPL2O75678 378 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 STAM2O75886 525 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 ZIC2O95409 532 aaPredicted RBP6.03□□□□□ -1.44
PTPN4-209ENST00000469511 CCNE2O96020 404 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 CNPP09543 421 aaKnown RBP6.03□□□□□ -1.44
PTPN4-209ENST00000469511 SPATA31D3P0C874 917 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 CTSAP10619 480 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 TIMP2P16035 220 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 WEE1P30291 646 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 HOXC13P31276 330 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 GBP2P32456 591 aaPredicted RBP6.03□□□□□ -1.44
PTPN4-209ENST00000469511 STAT5BP51692 787 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 CLCN4P51793 760 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 AFF1P51825 1210 aaKnown RBP6.03□□□□□ -1.44
PTPN4-209ENST00000469511 PDE1AP54750 535 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 ACTR2P61160 394 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 GPC5P78333 572 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 KRT17Q04695 432 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 CSTF1Q05048 431 aaKnown RBP6.03□□□□□ -1.44
PTPN4-209ENST00000469511 PTPN14Q15678 1187 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 LETM2Q2VYF4 491 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 PPM1JQ5JR12 505 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 IFIT1BQ5T764 474 aaKnown RBP6.03□□□□□ -1.44
PTPN4-209ENST00000469511 SPATA31D4Q6ZUB0 917 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 OTOP3Q7RTS5 596 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 TAS1R1Q7RTX1 841 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 NLRX1Q86UT6 975 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 CABP7Q86V35 215 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 ZNF280BQ86YH2 543 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 CMTR1Q8N1G2 835 aaKnown RBP6.03□□□□□ -1.44
PTPN4-209ENST00000469511 NME8Q8N427 588 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 KDF1Q8NAX2 398 aaPredicted RBP6.03□□□□□ -1.44
PTPN4-209ENST00000469511 TSEN2Q8NCE0 465 aaKnown RBP6.03□□□□□ -1.44
PTPN4-209ENST00000469511 ACSF2Q96CM8 615 aaPredicted RBP6.03□□□□□ -1.44
PTPN4-209ENST00000469511 GPRASP2Q96D09 838 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 MYL10Q9BUA6 226 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 RNF41Q9H4P4 317 aaPredicted RBP6.03□□□□□ -1.44
PTPN4-209ENST00000469511 ELAC1Q9H777 363 aaKnown RBP6.03□□□□□ -1.44
PTPN4-209ENST00000469511 NRDE2Q9H7Z3 1164 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 IGSF9Q9P2J2 1179 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 SLC9A2Q9UBY0 812 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 USP18Q9UMW8 372 aa6.03□□□□□ -1.44
PTPN4-209ENST00000469511 TDRD15B5MCY1 1934 aaKnown RBP6.03□□□□□ -1.44
PTPN4-209ENST00000469511 ANKRD11Q6UB99 2663 aaPredicted RBP6.02□□□□□ -1.44
PTPN4-209ENST00000469511 CEP295Q9C0D2 2601 aa6.02□□□□□ -1.45
PTPN4-209ENST00000469511 SPAG17Q6Q759 2223 aa6.02□□□□□ -1.45
PTPN4-209ENST00000469511 CCDC195A0A1B0GUA6 201 aa6.02□□□□□ -1.45
PTPN4-209ENST00000469511 SHISA7A6NL88 538 aa6.02□□□□□ -1.45
PTPN4-209ENST00000469511 GPR182O15218 404 aa6.02□□□□□ -1.45
PTPN4-209ENST00000469511 ZC3H11AO75152 810 aaKnown RBP eCLIP6.02□□□□□ -1.45
PTPN4-209ENST00000469511 DDHD2O94830 711 aa6.02□□□□□ -1.45
PTPN4-209ENST00000469511 C22orf31O95567 290 aa6.02□□□□□ -1.45
PTPN4-209ENST00000469511 STAU1O95793 577 aaKnown RBP6.02□□□□□ -1.45
PTPN4-209ENST00000469511 GALTP07902 379 aa6.02□□□□□ -1.45
PTPN4-209ENST00000469511 PCP11498 1178 aaKnown RBP6.02□□□□□ -1.45
PTPN4-209ENST00000469511 SRFP11831 508 aa6.02□□□□□ -1.45
PTPN4-209ENST00000469511 SDSP20132 328 aa6.02□□□□□ -1.45
PTPN4-209ENST00000469511 SLC11A1P49279 550 aa6.02□□□□□ -1.45
PTPN4-209ENST00000469511 CLCN3P51790 818 aa6.02□□□□□ -1.45
PTPN4-209ENST00000469511 CRYBB1P53674 252 aaPredicted RBP6.02□□□□□ -1.45
PTPN4-209ENST00000469511 EPHA4P54764 986 aa6.02□□□□□ -1.45
PTPN4-209ENST00000469511 WDR4P57081 412 aaKnown RBP6.02□□□□□ -1.45
PTPN4-209ENST00000469511 NLRP11P59045 1033 aaKnown RBP6.02□□□□□ -1.45
PTPN4-209ENST00000469511 SPEM2Q0P670 501 aa6.02□□□□□ -1.45
PTPN4-209ENST00000469511 TROAPQ12815 778 aa6.02□□□□□ -1.45
PTPN4-209ENST00000469511 FZD5Q13467 585 aa6.02□□□□□ -1.45
PTPN4-209ENST00000469511 SNW1Q13573 536 aaKnown RBP6.02□□□□□ -1.45
PTPN4-209ENST00000469511 MTMR1Q13613 665 aa6.02□□□□□ -1.45
PTPN4-209ENST00000469511 ANKRD45Q5TZF3 282 aa6.02□□□□□ -1.45
PTPN4-209ENST00000469511 DCLRE1AQ6PJP8 1040 aa6.02□□□□□ -1.45
PTPN4-209ENST00000469511 DDX53Q86TM3 631 aaKnown RBP6.02□□□□□ -1.45
PTPN4-209ENST00000469511 CCDC60Q8IWA6 550 aaPredicted RBP6.02□□□□□ -1.45
PTPN4-209ENST00000469511 LRRC43Q8N309 656 aa6.02□□□□□ -1.45
PTPN4-209ENST00000469511 PJA1Q8NG27 643 aa6.02□□□□□ -1.45
PTPN4-209ENST00000469511 RILPL2Q969X0 211 aa6.02□□□□□ -1.45
PTPN4-209ENST00000469511 ZNF707Q96C28 371 aaPredicted RBP6.02□□□□□ -1.45
PTPN4-209ENST00000469511 TMEM169Q96HH4 297 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms