RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 GIPC2Q8TF65 315 aa6.06□□□□□ -1.44
HMGB1-207ENST00000468384 FGF14Q92915 247 aa6.06□□□□□ -1.44
HMGB1-207ENST00000468384 TRIM11Q96F44 468 aa6.06□□□□□ -1.44
HMGB1-207ENST00000468384 BTBD6Q96KE9 485 aa6.06□□□□□ -1.44
HMGB1-207ENST00000468384 PRIMPOLQ96LW4 560 aa6.06□□□□□ -1.44
HMGB1-207ENST00000468384 TEX13BQ9BXU2 312 aa6.06□□□□□ -1.44
HMGB1-207ENST00000468384 WDR11Q9BZH6 1224 aa6.06□□□□□ -1.44
HMGB1-207ENST00000468384 HEBP1Q9NRV9 189 aa6.06□□□□□ -1.44
HMGB1-207ENST00000468384 C2orf42Q9NWW7 574 aa6.06□□□□□ -1.44
HMGB1-207ENST00000468384 DDX41Q9UJV9 622 aaKnown RBP6.06□□□□□ -1.44
HMGB1-207ENST00000468384 CHMP3Q9Y3E7 222 aa6.06□□□□□ -1.44
HMGB1-207ENST00000468384 TACC2O95359 2948 aa6.05□□□□□ -1.44
HMGB1-207ENST00000468384 MYH2Q9UKX2 1941 aa6.05□□□□□ -1.44
HMGB1-207ENST00000468384 PHLPP2Q6ZVD8 1323 aa6.05□□□□□ -1.44
HMGB1-207ENST00000468384 FAM149AA5PLN7 773 aa6.05□□□□□ -1.44
HMGB1-207ENST00000468384 ANKRD33BA6NCL7 494 aa6.05□□□□□ -1.44
HMGB1-207ENST00000468384 SFI1A8K8P3 1242 aa6.05□□□□□ -1.44
HMGB1-207ENST00000468384 SIX3O95343 332 aaPredicted RBP6.05□□□□□ -1.44
HMGB1-207ENST00000468384 MAP4K4O95819 1239 aaPredicted RBP6.05□□□□□ -1.44
HMGB1-207ENST00000468384 ABL1P00519 1130 aa6.05□□□□□ -1.44
HMGB1-207ENST00000468384 CTSHP09668 335 aa6.05□□□□□ -1.44
HMGB1-207ENST00000468384 USP5P45974 858 aa6.05□□□□□ -1.44
HMGB1-207ENST00000468384 GATMP50440 423 aa6.05□□□□□ -1.44
HMGB1-207ENST00000468384 CASP7P55210 303 aa6.05□□□□□ -1.44
HMGB1-207ENST00000468384 ZNF211Q13398 564 aaPredicted RBP6.05□□□□□ -1.44
HMGB1-207ENST00000468384 CWF19L2Q2TBE0 894 aaKnown RBP6.05□□□□□ -1.44
HMGB1-207ENST00000468384 DCAF6Q58WW2 860 aa6.05□□□□□ -1.44
HMGB1-207ENST00000468384 PARM1Q6UWI2 310 aa6.05□□□□□ -1.44
HMGB1-207ENST00000468384 TAS1R3Q7RTX0 852 aa6.05□□□□□ -1.44
HMGB1-207ENST00000468384 DZIP1Q86YF9 867 aaKnown RBP6.05□□□□□ -1.44
HMGB1-207ENST00000468384 KAT2BQ92831 832 aa6.05□□□□□ -1.44
HMGB1-207ENST00000468384 CCDC8Q9H0W5 538 aaPredicted RBP6.05□□□□□ -1.44
HMGB1-207ENST00000468384 PANK3Q9H999 370 aa6.05□□□□□ -1.44
HMGB1-207ENST00000468384 VTA1Q9NP79 307 aa6.05□□□□□ -1.44
HMGB1-207ENST00000468384 ANO2Q9NQ90 1003 aa6.05□□□□□ -1.44
HMGB1-207ENST00000468384 PCMTD2Q9NV79 361 aa6.05□□□□□ -1.44
HMGB1-207ENST00000468384 FBXO28Q9NVF7 368 aa6.05□□□□□ -1.44
HMGB1-207ENST00000468384 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.05□□□□□ -1.444e-8■■■■■ 33.6
HMGB1-207ENST00000468384 MBD1Q9UIS9 605 aaPredicted RBP6.05□□□□□ -1.44
HMGB1-207ENST00000468384 OAS3Q9Y6K5 1087 aaKnown RBP6.05□□□□□ -1.44
HMGB1-207ENST00000468384 ZMYM6O95789 1325 aa6.04□□□□□ -1.44
HMGB1-207ENST00000468384 CCDC163A0A0D9SF12 145 aa6.04□□□□□ -1.44
HMGB1-207ENST00000468384 NEURL1BA8MQ27 555 aa6.04□□□□□ -1.44
HMGB1-207ENST00000468384 H3BRB1 525 aa6.04□□□□□ -1.44
HMGB1-207ENST00000468384 MAN2B1O00754 1011 aa6.04□□□□□ -1.44
HMGB1-207ENST00000468384 CD59P13987 128 aa6.04□□□□□ -1.44
HMGB1-207ENST00000468384 ENGP17813 658 aa6.04□□□□□ -1.44
HMGB1-207ENST00000468384 PXNP49023 591 aaPredicted RBP6.04□□□□□ -1.44
HMGB1-207ENST00000468384 UCNP55089 124 aa6.04□□□□□ -1.44
HMGB1-207ENST00000468384 SEC13P55735 322 aa6.04□□□□□ -1.44
HMGB1-207ENST00000468384 NEUROD1Q13562 356 aa6.04□□□□□ -1.44
HMGB1-207ENST00000468384 WTAPQ15007 396 aa6.04□□□□□ -1.44
HMGB1-207ENST00000468384 CCDC102BQ68D86 513 aa6.04□□□□□ -1.44
HMGB1-207ENST00000468384 TATDN1Q6P1N9 297 aa6.04□□□□□ -1.44
HMGB1-207ENST00000468384 SERINC5Q86VE9 423 aa6.04□□□□□ -1.44
HMGB1-207ENST00000468384 CCDC116Q8IYX3 515 aa6.04□□□□□ -1.44
HMGB1-207ENST00000468384 SPICE1Q8N0Z3 855 aa6.04□□□□□ -1.44
HMGB1-207ENST00000468384 GALNT15Q8N3T1 639 aa6.04□□□□□ -1.44
HMGB1-207ENST00000468384 CHST13Q8NET6 341 aa6.04□□□□□ -1.44
HMGB1-207ENST00000468384 TPCN2Q8NHX9 752 aa6.04□□□□□ -1.44
HMGB1-207ENST00000468384 NXPE2Q96DL1 559 aa6.04□□□□□ -1.44
HMGB1-207ENST00000468384 GMCL1Q96IK5 515 aa6.04□□□□□ -1.44
HMGB1-207ENST00000468384 PUS3Q9BZE2 481 aaKnown RBP6.04□□□□□ -1.44
HMGB1-207ENST00000468384 TUT1Q9H6E5 874 aaKnown RBP6.04□□□□□ -1.44
HMGB1-207ENST00000468384 EGFL7Q9UHF1 273 aa6.04□□□□□ -1.44
HMGB1-207ENST00000468384 EVLQ9UI08 416 aaPredicted RBP6.04□□□□□ -1.44
HMGB1-207ENST00000468384 MAP3K2Q9Y2U5 619 aa6.04□□□□□ -1.44
HMGB1-207ENST00000468384 C2orf16Q68DN1 1984 aa6.04□□□□□ -1.44
HMGB1-207ENST00000468384 MAGEB6P1A0A0J9YX57 407 aa6.03□□□□□ -1.44
HMGB1-207ENST00000468384 PLK4O00444 970 aa6.03□□□□□ -1.44
HMGB1-207ENST00000468384 SH3BP5O60239 455 aa6.03□□□□□ -1.44
HMGB1-207ENST00000468384 SPATA31C1P0DKV0 1188 aa6.03□□□□□ -1.44
HMGB1-207ENST00000468384 CHRNB1P11230 501 aa6.03□□□□□ -1.44
HMGB1-207ENST00000468384 GUCY1A2P33402 732 aa6.03□□□□□ -1.44
HMGB1-207ENST00000468384 CA8P35219 290 aa6.03□□□□□ -1.44
HMGB1-207ENST00000468384 AFMP43652 599 aa6.03□□□□□ -1.44
HMGB1-207ENST00000468384 ABCB5Q2M3G0 1257 aa6.03□□□□□ -1.44
HMGB1-207ENST00000468384 CCDC57Q2TAC2 916 aa6.03□□□□□ -1.44
HMGB1-207ENST00000468384 BEND3Q5T5X7 828 aa6.03□□□□□ -1.44
HMGB1-207ENST00000468384 TEX11Q8IYF3 940 aa6.03□□□□□ -1.44
HMGB1-207ENST00000468384 TMEM87AQ8NBN3 555 aa6.03□□□□□ -1.44
HMGB1-207ENST00000468384 SNRNP27Q8WVK2 155 aaKnown RBP6.03□□□□□ -1.44
HMGB1-207ENST00000468384 ADAMTS10Q9H324 1103 aa6.03□□□□□ -1.44
HMGB1-207ENST00000468384 PCDHGA11Q9Y5H2 935 aa6.03□□□□□ -1.44
HMGB1-207ENST00000468384 MYH7BA7E2Y1 1941 aa6.03□□□□□ -1.44
HMGB1-207ENST00000468384 ADAMTS9Q9P2N4 1935 aa6.03□□□□□ -1.44
HMGB1-207ENST00000468384 MYH15Q9Y2K3 1946 aa6.03□□□□□ -1.44
HMGB1-207ENST00000468384 MEGF8Q7Z7M0 2845 aa6.02□□□□□ -1.45
HMGB1-207ENST00000468384 ICMTO60725 284 aa6.02□□□□□ -1.45
HMGB1-207ENST00000468384 OPHN1O60890 802 aa6.02□□□□□ -1.45
HMGB1-207ENST00000468384 AGFG2O95081 481 aa6.02□□□□□ -1.45
HMGB1-207ENST00000468384 H2AFB1P0C5Y9 115 aa6.02□□□□□ -1.45
HMGB1-207ENST00000468384 H2AFB2P0C5Z0 115 aa6.02□□□□□ -1.45
HMGB1-207ENST00000468384 FOXO4P98177 505 aa6.02□□□□□ -1.45
HMGB1-207ENST00000468384 KRT17Q04695 432 aa6.02□□□□□ -1.45
HMGB1-207ENST00000468384 MAPK6Q16659 721 aa6.02□□□□□ -1.45
HMGB1-207ENST00000468384 TRIM61Q5EBN2 209 aa6.02□□□□□ -1.45
HMGB1-207ENST00000468384 BROXQ5VW32 411 aa6.02□□□□□ -1.45
HMGB1-207ENST00000468384 KIAA1614Q5VZ46 1190 aa6.02□□□□□ -1.45
HMGB1-207ENST00000468384 GET4Q7L5D6 327 aaPredicted RBP6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms