RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 E9PMD0 336 aa23.46■■□□□ 1.35
HMGB3-205ENST00000455596 DDHD2O94830 711 aa23.46■■□□□ 1.35
HMGB3-205ENST00000455596 NPTXRO95502 500 aa23.46■■□□□ 1.35
HMGB3-205ENST00000455596 POMCP01189 267 aa23.46■■□□□ 1.35
HMGB3-205ENST00000455596 SRGAP2BP0DMP2 458 aa23.46■■□□□ 1.35
HMGB3-205ENST00000455596 SLC11A1P49279 550 aa23.46■■□□□ 1.35
HMGB3-205ENST00000455596 AFF1P51825 1210 aaKnown RBP23.46■■□□□ 1.35
HMGB3-205ENST00000455596 COASYQ13057 564 aa23.46■■□□□ 1.35
HMGB3-205ENST00000455596 SMAD2Q15796 467 aaKnown RBP23.46■■□□□ 1.35
HMGB3-205ENST00000455596 MAPK6Q16659 721 aa23.46■■□□□ 1.35
HMGB3-205ENST00000455596 ARL6IP4Q66PJ3 421 aaKnown RBP23.46■■□□□ 1.35
HMGB3-205ENST00000455596 TMEM173Q86WV6 379 aaPredicted RBP23.46■■□□□ 1.35
HMGB3-205ENST00000455596 CDR2LQ86X02 465 aaPredicted RBP23.46■■□□□ 1.35
HMGB3-205ENST00000455596 TMEM175Q9BSA9 504 aa23.46■■□□□ 1.35
HMGB3-205ENST00000455596 MMTAG2Q9BU76 263 aaKnown RBP23.46■■□□□ 1.35
HMGB3-205ENST00000455596 APOL6Q9BWW8 343 aa23.46■■□□□ 1.35
HMGB3-205ENST00000455596 RNF39Q9H2S5 420 aa23.46■■□□□ 1.35
HMGB3-205ENST00000455596 PRKAG3Q9UGI9 489 aa23.46■■□□□ 1.35
HMGB3-205ENST00000455596 VWA3AA6NCI4 1184 aa23.45■■□□□ 1.34
HMGB3-205ENST00000455596 INPPL1O15357 1258 aa23.45■■□□□ 1.34
HMGB3-205ENST00000455596 CA8P35219 290 aa23.45■■□□□ 1.34
HMGB3-205ENST00000455596 MLH1P40692 756 aa23.45■■□□□ 1.34
HMGB3-205ENST00000455596 TMEM132AQ24JP5 1023 aa23.45■■□□□ 1.34
HMGB3-205ENST00000455596 BRAPQ7Z569 592 aa23.45■■□□□ 1.34
HMGB3-205ENST00000455596 DDX53Q86TM3 631 aaKnown RBP23.45■■□□□ 1.34
HMGB3-205ENST00000455596 VPS52Q8N1B4 723 aa23.45■■□□□ 1.34
HMGB3-205ENST00000455596 GAD1Q99259 594 aa23.45■■□□□ 1.34
HMGB3-205ENST00000455596 NXF3Q9H4D5 531 aaKnown RBP23.45■■□□□ 1.34
HMGB3-205ENST00000455596 CD320Q9NPF0 282 aa23.45■■□□□ 1.34
HMGB3-205ENST00000455596 GIT1Q9Y2X7 761 aa23.45■■□□□ 1.34
HMGB3-205ENST00000455596 ARL5CA6NH57 179 aa23.44■■□□□ 1.34
HMGB3-205ENST00000455596 N4BP3O15049 544 aa23.44■■□□□ 1.34
HMGB3-205ENST00000455596 B4GALT3O60512 393 aa23.44■■□□□ 1.34
HMGB3-205ENST00000455596 ALDH2P05091 517 aa23.44■■□□□ 1.34
HMGB3-205ENST00000455596 PRKCBP05771 671 aa23.44■■□□□ 1.34
HMGB3-205ENST00000455596 PDCP20941 246 aa23.44■■□□□ 1.34
HMGB3-205ENST00000455596 SSTR3P32745 418 aaPredicted RBP23.44■■□□□ 1.34
HMGB3-205ENST00000455596 PRPF4BQ13523 1007 aaKnown RBP23.44■■□□□ 1.34
HMGB3-205ENST00000455596 GJD3Q8N144 294 aa23.44■■□□□ 1.34
HMGB3-205ENST00000455596 MRPL43Q8N983 215 aaKnown RBP23.44■■□□□ 1.34
HMGB3-205ENST00000455596 SMRP1Q8NCR6 262 aa23.44■■□□□ 1.34
HMGB3-205ENST00000455596 VN1R2Q8NFZ6 395 aa23.44■■□□□ 1.34
HMGB3-205ENST00000455596 CCDC113Q9H0I3 377 aa23.44■■□□□ 1.34
HMGB3-205ENST00000455596 ZBP1Q9H171 429 aa23.44■■□□□ 1.34
HMGB3-205ENST00000455596 POLD4Q9HCU8 107 aa23.44■■□□□ 1.34
HMGB3-205ENST00000455596 FAN1Q9Y2M0 1017 aa23.44■■□□□ 1.34
HMGB3-205ENST00000455596 TRIP11Q15643 1979 aa23.43■■□□□ 1.34
HMGB3-205ENST00000455596 C2orf71A6NGG8 1288 aa23.43■■□□□ 1.34
HMGB3-205ENST00000455596 CXCL14O95715 111 aa23.43■■□□□ 1.34
HMGB3-205ENST00000455596 LIG1P18858 919 aa23.43■■□□□ 1.34
HMGB3-205ENST00000455596 RBM10P98175 930 aaKnown RBP23.43■■□□□ 1.34
HMGB3-205ENST00000455596 KCNC3Q14003 757 aa23.43■■□□□ 1.34
HMGB3-205ENST00000455596 ZRSR1Q15695 479 aaKnown RBP23.43■■□□□ 1.34
HMGB3-205ENST00000455596 HYIQ5T013 277 aa23.43■■□□□ 1.34
HMGB3-205ENST00000455596 TMEM184AQ6ZMB5 413 aa23.43■■□□□ 1.34
HMGB3-205ENST00000455596 KCTD17Q8N5Z5 321 aa23.43■■□□□ 1.34
HMGB3-205ENST00000455596 BCL7CQ8WUZ0 217 aaPredicted RBP23.43■■□□□ 1.34
HMGB3-205ENST00000455596 NT5C3AQ9H0P0 336 aa23.43■■□□□ 1.34
HMGB3-205ENST00000455596 STK39Q9UEW8 545 aa23.43■■□□□ 1.34
HMGB3-205ENST00000455596 ZMYM2Q9UBW7 1377 aa23.42■■□□□ 1.34
HMGB3-205ENST00000455596 VPS37CA5D8V6 355 aaPredicted RBP23.42■■□□□ 1.34
HMGB3-205ENST00000455596 ACKR2O00590 384 aa23.42■■□□□ 1.34
HMGB3-205ENST00000455596 NRP1O14786 923 aa23.42■■□□□ 1.34
HMGB3-205ENST00000455596 CTSAP10619 480 aa23.42■■□□□ 1.34
HMGB3-205ENST00000455596 AKAP5P24588 427 aa23.42■■□□□ 1.34
HMGB3-205ENST00000455596 SCNN1GP51170 649 aa23.42■■□□□ 1.34
HMGB3-205ENST00000455596 EFNA5P52803 228 aa23.42■■□□□ 1.34
HMGB3-205ENST00000455596 ZP2Q05996 745 aa23.42■■□□□ 1.34
HMGB3-205ENST00000455596 GIT2Q14161 759 aa23.42■■□□□ 1.34
HMGB3-205ENST00000455596 KCNK18Q7Z418 384 aa23.42■■□□□ 1.34
HMGB3-205ENST00000455596 ADHFE1Q8IWW8 467 aa23.42■■□□□ 1.34
HMGB3-205ENST00000455596 COLGALT2Q8IYK4 626 aa23.42■■□□□ 1.34
HMGB3-205ENST00000455596 CDK5RAP3Q96JB5 506 aa23.42■■□□□ 1.34
HMGB3-205ENST00000455596 ZFP42Q96MM3 310 aa23.42■■□□□ 1.34
HMGB3-205ENST00000455596 ADPGKQ9BRR6 497 aa23.42■■□□□ 1.34
HMGB3-205ENST00000455596 PDZD7Q9H5P4 517 aa23.42■■□□□ 1.34
HMGB3-205ENST00000455596 MIOSQ9NXC5 875 aa23.42■■□□□ 1.34
HMGB3-205ENST00000455596 MYH15Q9Y2K3 1946 aa23.41■■□□□ 1.34
HMGB3-205ENST00000455596 BMP15O95972 392 aa23.41■■□□□ 1.34
HMGB3-205ENST00000455596 RINT1Q6NUQ1 792 aa23.41■■□□□ 1.34
HMGB3-205ENST00000455596 LLGL2Q6P1M3 1020 aa23.41■■□□□ 1.34
HMGB3-205ENST00000455596 DRC1Q96MC2 740 aa23.41■■□□□ 1.34
HMGB3-205ENST00000455596 PNMA5Q96PV4 448 aa23.41■■□□□ 1.34
HMGB3-205ENST00000455596 POP1Q99575 1024 aaKnown RBP23.41■■□□□ 1.34
HMGB3-205ENST00000455596 KIFC3Q9BVG8 833 aa23.41■■□□□ 1.34
HMGB3-205ENST00000455596 PARP2Q9UGN5 583 aa23.41■■□□□ 1.34
HMGB3-205ENST00000455596 IRAK3Q9Y616 596 aa23.41■■□□□ 1.34
HMGB3-205ENST00000455596 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP23.4■■□□□ 1.34
HMGB3-205ENST00000455596 TTLL13PA6NNM8 815 aa23.4■■□□□ 1.34
HMGB3-205ENST00000455596 HIP1RO75146 1068 aa23.4■■□□□ 1.34
HMGB3-205ENST00000455596 OR1G1P47890 313 aa23.4■■□□□ 1.34
HMGB3-205ENST00000455596 DSC1Q08554 894 aa23.4■■□□□ 1.34
HMGB3-205ENST00000455596 ANKRD54Q6NXT1 300 aa23.4■■□□□ 1.34
HMGB3-205ENST00000455596 C1orf186Q6ZWK4 172 aa23.4■■□□□ 1.34
HMGB3-205ENST00000455596 TMEM87AQ8NBN3 555 aa23.4■■□□□ 1.34
HMGB3-205ENST00000455596 CASP10Q92851 521 aa23.4■■□□□ 1.34
HMGB3-205ENST00000455596 AK8Q96MA6 479 aa23.4■■□□□ 1.34
HMGB3-205ENST00000455596 RPS6KC1Q96S38 1066 aa23.4■■□□□ 1.34
HMGB3-205ENST00000455596 RUSC1Q9BVN2 902 aa23.4■■□□□ 1.34
HMGB3-205ENST00000455596 TIPINQ9BVW5 301 aa23.4■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms