RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 CCDC105Q8IYK2 499 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 SUPT20HQ8NEM7 779 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 SH3TC2Q8TF17 1288 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 DNAJC9Q8WXX5 260 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 EYA3Q99504 573 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 TBC1D10AQ9BXI6 508 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 PITPNM3Q9BZ71 974 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 HAO1Q9UJM8 370 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 DNAJC12Q9UKB3 198 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 ARFGEF1Q9Y6D6 1849 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 POTEFA5A3E0 1075 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 POTEIP0CG38 1075 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 POTEJP0CG39 1038 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 T-ENOLP0DO92 83 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 KCNJ1P48048 391 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 SF3B3Q15393 1217 aaKnown RBP11.48□□□□□ -0.57
USP54-204ENST00000422491 WASHC2DQ5SRD0 308 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 OR52E8Q6IFG1 317 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 POTEEQ6S8J3 1075 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 MIGA2Q7L4E1 593 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 CELF1Q92879 486 aaKnown RBP11.48□□□□□ -0.57
USP54-204ENST00000422491 CEP95Q96GE4 821 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 KIAA1683Q9H0B3 1180 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 LGALS13Q9UHV8 139 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 DDX60LQ5H9U9 1706 aaKnown RBP11.48□□□□□ -0.57
USP54-204ENST00000422491 TTC4O95801 387 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 PYGMP11217 842 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 CETPP11597 493 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 RXRBP28702 533 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 CHKAP35790 457 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 NOVP48745 357 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 STRN3Q13033 797 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 CALCOCO2Q13137 446 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 MOGSQ13724 837 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 TCEAL1Q15170 157 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 SEL1L2Q5TEA6 688 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 POTEGQ6S5H5 508 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 VSIG1Q86XK7 387 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 C12orf50Q8NA57 414 aaPredicted RBP11.47□□□□□ -0.57
USP54-204ENST00000422491 TGFBRAP1Q8WUH2 860 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 POP1Q99575 1024 aaKnown RBP11.47□□□□□ -0.57
USP54-204ENST00000422491 REEP2Q9BRK0 252 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 WHRNQ9P202 907 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 USP20Q9Y2K6 914 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 STARD13Q9Y3M8 1113 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 MROH7Q68CQ1 1323 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 FRMPD2Q68DX3 1309 aaPredicted RBP11.47□□□□□ -0.57
USP54-204ENST00000422491 SIGLEC16A6NMB1 481 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 SLC26A4O43511 780 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 MARCH6O60337 910 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 TNFAIP3P21580 790 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 RPL13P26373 211 aaKnown RBP11.47□□□□□ -0.57
USP54-204ENST00000422491 CDK8P49336 464 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 SETDB1Q15047 1291 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 TSNAXIP1Q2TAA8 658 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 TMEM63BQ5T3F8 832 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 SEPT14Q6ZU15 432 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 FAM47EQ6ZV65 393 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 SLC13A5Q86YT5 568 aaPredicted RBP11.47□□□□□ -0.57
USP54-204ENST00000422491 DRAXINQ8NBI3 349 aaPredicted RBP11.47□□□□□ -0.57
USP54-204ENST00000422491 RBBP8NLQ8NC74 664 aaPredicted RBP11.47□□□□□ -0.57
USP54-204ENST00000422491 TTC8Q8TAM2 541 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 CD101Q93033 1021 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 LRRC37BQ96QE4 947 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 UIMC1Q96RL1 719 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 DENND2DQ9H6A0 471 aaPredicted RBP11.47□□□□□ -0.57
USP54-204ENST00000422491 SAP30BPQ9UHR5 308 aaKnown RBP11.47□□□□□ -0.57
USP54-204ENST00000422491 PCDHB13Q9Y5F0 798 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 NHSQ6T4R5 1651 aa11.47□□□□□ -0.57
USP54-204ENST00000422491 TRAFD1O14545 582 aaPredicted RBP11.46□□□□□ -0.57
USP54-204ENST00000422491 CLIC2O15247 247 aa11.46□□□□□ -0.57
USP54-204ENST00000422491 MAGEB2O15479 319 aa11.46□□□□□ -0.57
USP54-204ENST00000422491 EPHB2P29323 1055 aa11.46□□□□□ -0.57
USP54-204ENST00000422491 RFC5P40937 340 aa11.46□□□□□ -0.57
USP54-204ENST00000422491 WDR4P57081 412 aaKnown RBP11.46□□□□□ -0.57
USP54-204ENST00000422491 TNIP1Q15025 636 aa11.46□□□□□ -0.57
USP54-204ENST00000422491 GRIPAP1Q4V328 841 aa11.46□□□□□ -0.57
USP54-204ENST00000422491 RNF220Q5VTB9 566 aa11.46□□□□□ -0.57
USP54-204ENST00000422491 IRGCQ6NXR0 463 aa11.46□□□□□ -0.57
USP54-204ENST00000422491 PPP1R21Q6ZMI0 780 aa11.46□□□□□ -0.57
USP54-204ENST00000422491 C16orf86Q6ZW13 317 aa11.46□□□□□ -0.57
USP54-204ENST00000422491 LONP2Q86WA8 852 aa11.46□□□□□ -0.57
USP54-204ENST00000422491 SLCO2A1Q92959 643 aa11.46□□□□□ -0.57
USP54-204ENST00000422491 ZNF333Q96JL9 665 aa11.46□□□□□ -0.57
USP54-204ENST00000422491 CCDC87Q9NVE4 849 aa11.46□□□□□ -0.57
USP54-204ENST00000422491 NKIRAS1Q9NYS0 192 aa11.46□□□□□ -0.57
USP54-204ENST00000422491 DLGAP2Q9P1A6 1054 aa11.46□□□□□ -0.57
USP54-204ENST00000422491 RPL26L1Q9UNX3 145 aaKnown RBP11.46□□□□□ -0.57
USP54-204ENST00000422491 USH1CQ9Y6N9 552 aa11.46□□□□□ -0.57
USP54-204ENST00000422491 H0Y3Z8 333 aa11.46□□□□□ -0.58
USP54-204ENST00000422491 ENTPD5O75356 428 aa11.46□□□□□ -0.58
USP54-204ENST00000422491 ECEL1O95672 775 aa11.46□□□□□ -0.58
USP54-204ENST00000422491 COMTP21964 271 aa11.46□□□□□ -0.58
USP54-204ENST00000422491 KCNA1Q09470 495 aa11.46□□□□□ -0.58
USP54-204ENST00000422491 KIF22Q14807 665 aa11.46□□□□□ -0.58
USP54-204ENST00000422491 ERFEQ4G0M1 354 aa11.46□□□□□ -0.58
USP54-204ENST00000422491 PPP1R18Q6NYC8 613 aa11.46□□□□□ -0.58
USP54-204ENST00000422491 SRRM1Q8IYB3 904 aaKnown RBP11.46□□□□□ -0.58
USP54-204ENST00000422491 PHC3Q8NDX5 983 aa11.46□□□□□ -0.58
USP54-204ENST00000422491 LRRC19Q9H756 370 aa11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms