RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 DUSP9Q99956 384 aaKnown RBP19.77■□□□□ 0.76
SDC1-203ENST00000403076 NOC4LQ9BVI4 516 aaKnown RBP19.77■□□□□ 0.76
SDC1-203ENST00000403076 PPP1R12CQ9BZL4 782 aa19.77■□□□□ 0.76
SDC1-203ENST00000403076 RBSNQ9H1K0 784 aa19.77■□□□□ 0.76
SDC1-203ENST00000403076 PCIF1Q9H4Z3 704 aa19.77■□□□□ 0.76
SDC1-203ENST00000403076 ANKFY1Q9P2R3 1169 aa19.77■□□□□ 0.76
SDC1-203ENST00000403076 CETN3O15182 167 aa19.76■□□□□ 0.75
SDC1-203ENST00000403076 TOM1L1O75674 476 aa19.76■□□□□ 0.75
SDC1-203ENST00000403076 NR2F2P24468 414 aa19.76■□□□□ 0.75
SDC1-203ENST00000403076 AMHR2Q16671 573 aa19.76■□□□□ 0.75
SDC1-203ENST00000403076 SLC39A4Q6P5W5 647 aa19.76■□□□□ 0.75
SDC1-203ENST00000403076 FOXR2Q6PJQ5 311 aa19.76■□□□□ 0.75
SDC1-203ENST00000403076 FAM228AQ86W67 206 aa19.76■□□□□ 0.75
SDC1-203ENST00000403076 TNS4Q8IZW8 715 aa19.76■□□□□ 0.75
SDC1-203ENST00000403076 EEF2KMTQ96G04 330 aa19.76■□□□□ 0.75
SDC1-203ENST00000403076 ZBTB45Q96K62 511 aaPredicted RBP19.76■□□□□ 0.75
SDC1-203ENST00000403076 PRDM5Q9NQX1 630 aaPredicted RBP19.76■□□□□ 0.75
SDC1-203ENST00000403076 CNTNAP2Q9UHC6 1331 aa19.76■□□□□ 0.75
SDC1-203ENST00000403076 GPR182O15218 404 aa19.76■□□□□ 0.75
SDC1-203ENST00000403076 CLDN3O15551 220 aa19.76■□□□□ 0.75
SDC1-203ENST00000403076 HARSP12081 509 aaKnown RBP19.76■□□□□ 0.75
SDC1-203ENST00000403076 ARF4P18085 180 aaPredicted RBP19.76■□□□□ 0.75
SDC1-203ENST00000403076 PAK2Q13177 524 aa19.76■□□□□ 0.75
SDC1-203ENST00000403076 LPIN1Q14693 890 aa19.76■□□□□ 0.75
SDC1-203ENST00000403076 TSHZ1Q6ZSZ6 1077 aa19.76■□□□□ 0.75
SDC1-203ENST00000403076 ZBTB33Q86T24 672 aa19.76■□□□□ 0.75
SDC1-203ENST00000403076 CDR2LQ86X02 465 aaPredicted RBP19.76■□□□□ 0.75
SDC1-203ENST00000403076 CREBRFQ8IUR6 639 aa19.76■□□□□ 0.75
SDC1-203ENST00000403076 USP38Q8NB14 1042 aa19.76■□□□□ 0.75
SDC1-203ENST00000403076 CBWD1Q9BRT8 395 aa19.76■□□□□ 0.75
SDC1-203ENST00000403076 FANCLQ9NW38 375 aa19.76■□□□□ 0.75
SDC1-203ENST00000403076 ST3GAL5Q9UNP4 418 aa19.76■□□□□ 0.75
SDC1-203ENST00000403076 PIN4Q9Y237 131 aaKnown RBP19.76■□□□□ 0.75
SDC1-203ENST00000403076 TNFSF13BQ9Y275 285 aa19.76■□□□□ 0.75
SDC1-203ENST00000403076 SQORQ9Y6N5 450 aa19.76■□□□□ 0.75
SDC1-203ENST00000403076 BRCA2P51587 3418 aa19.75■□□□□ 0.75
SDC1-203ENST00000403076 N4BP3O15049 544 aa19.75■□□□□ 0.75
SDC1-203ENST00000403076 EXOC3O60645 756 aa19.75■□□□□ 0.75
SDC1-203ENST00000403076 GARTP22102 1010 aa19.75■□□□□ 0.75
SDC1-203ENST00000403076 AXLP30530 894 aa19.75■□□□□ 0.75
SDC1-203ENST00000403076 CD52P31358 61 aa19.75■□□□□ 0.75
SDC1-203ENST00000403076 NCAPHQ15003 741 aa19.75■□□□□ 0.75
SDC1-203ENST00000403076 ZNF568Q3ZCX4 644 aa19.75■□□□□ 0.75
SDC1-203ENST00000403076 ADPGKQ9BRR6 497 aa19.75■□□□□ 0.75
SDC1-203ENST00000403076 HSPBP1Q9NZL4 362 aa19.75■□□□□ 0.75
SDC1-203ENST00000403076 TBX21Q9UL17 535 aa19.75■□□□□ 0.75
SDC1-203ENST00000403076 PADI3Q9ULW8 664 aa19.75■□□□□ 0.75
SDC1-203ENST00000403076 UMODL1Q5DID0 1318 aa19.74■□□□□ 0.75
SDC1-203ENST00000403076 CDK11BP21127 795 aaKnown RBP19.74■□□□□ 0.75
SDC1-203ENST00000403076 ADSSP30520 456 aa19.74■□□□□ 0.75
SDC1-203ENST00000403076 CYP2C18P33260 490 aa19.74■□□□□ 0.75
SDC1-203ENST00000403076 CCL23P55773 120 aa19.74■□□□□ 0.75
SDC1-203ENST00000403076 NFIL3Q16649 462 aa19.74■□□□□ 0.75
SDC1-203ENST00000403076 HSP90AA4PQ58FG1 418 aa19.74■□□□□ 0.75
SDC1-203ENST00000403076 EEF1DP3Q658K8 133 aa19.74■□□□□ 0.75
SDC1-203ENST00000403076 CEP135Q66GS9 1140 aa19.74■□□□□ 0.75
SDC1-203ENST00000403076 NOTUMQ6P988 496 aa19.74■□□□□ 0.75
SDC1-203ENST00000403076 TRAF7Q6Q0C0 670 aa19.74■□□□□ 0.75
SDC1-203ENST00000403076 MPZL3Q6UWV2 235 aa19.74■□□□□ 0.75
SDC1-203ENST00000403076 APBB1IPQ7Z5R6 666 aaPredicted RBP19.74■□□□□ 0.75
SDC1-203ENST00000403076 C12orf56Q8IXR9 622 aa19.74■□□□□ 0.75
SDC1-203ENST00000403076 XXYLT1Q8NBI6 393 aa19.74■□□□□ 0.75
SDC1-203ENST00000403076 CEP63Q96MT8 703 aa19.74■□□□□ 0.75
SDC1-203ENST00000403076 MSTO1Q9BUK6 570 aa19.74■□□□□ 0.75
SDC1-203ENST00000403076 PDZD7Q9H5P4 517 aa19.74■□□□□ 0.75
SDC1-203ENST00000403076 AGO3Q9H9G7 860 aaKnown RBP19.74■□□□□ 0.75
SDC1-203ENST00000403076 SAMSN1Q9NSI8 373 aaKnown RBP19.74■□□□□ 0.75
SDC1-203ENST00000403076 AGPAT5Q9NUQ2 364 aa19.74■□□□□ 0.75
SDC1-203ENST00000403076 MAGEC2Q9UBF1 373 aaPredicted RBP19.74■□□□□ 0.75
SDC1-203ENST00000403076 AGO2Q9UKV8 859 aaKnown RBP19.74■□□□□ 0.75
SDC1-203ENST00000403076 FRMD4BQ9Y2L6 1034 aa19.74■□□□□ 0.75
SDC1-203ENST00000403076 STYXL1Q9Y6J8 313 aa19.74■□□□□ 0.75
SDC1-203ENST00000403076 SIP14410 1827 aa19.74■□□□□ 0.75
SDC1-203ENST00000403076 GOLGA6L3A6NEY3 463 aa19.73■□□□□ 0.75
SDC1-203ENST00000403076 TULP1O00294 542 aaPredicted RBP19.73■□□□□ 0.75
SDC1-203ENST00000403076 ZSCAN20P17040 1043 aaPredicted RBP19.73■□□□□ 0.75
SDC1-203ENST00000403076 HOXA11P31270 313 aaPredicted RBP19.73■□□□□ 0.75
SDC1-203ENST00000403076 MYBPC2Q14324 1141 aa19.73■□□□□ 0.75
SDC1-203ENST00000403076 SLC9A9Q8IVB4 645 aa19.73■□□□□ 0.75
SDC1-203ENST00000403076 FAM114A1Q8IWE2 563 aa19.73■□□□□ 0.75
SDC1-203ENST00000403076 SAAL1Q96ER3 474 aa19.73■□□□□ 0.75
SDC1-203ENST00000403076 OSBPL7Q9BZF2 842 aa19.73■□□□□ 0.75
SDC1-203ENST00000403076 THAP9Q9H5L6 903 aa19.73■□□□□ 0.75
SDC1-203ENST00000403076 A0A1B0GUA9 196 aa19.72■□□□□ 0.75
SDC1-203ENST00000403076 GOLGA8IPA6NC78 632 aa19.72■□□□□ 0.75
SDC1-203ENST00000403076 GOLGA8JA6NMD2 632 aa19.72■□□□□ 0.75
SDC1-203ENST00000403076 KIAA0391O15091 583 aaKnown RBP19.72■□□□□ 0.75
SDC1-203ENST00000403076 LDHAP00338 332 aaKnown RBP19.72■□□□□ 0.75
SDC1-203ENST00000403076 RAG1P15918 1043 aa19.72■□□□□ 0.75
SDC1-203ENST00000403076 MBTPS1Q14703 1052 aa19.72■□□□□ 0.75
SDC1-203ENST00000403076 NOLC1Q14978 699 aaKnown RBP eCLIP19.72■□□□□ 0.75
SDC1-203ENST00000403076 CCDC40Q4G0X9 1142 aa19.72■□□□□ 0.75
SDC1-203ENST00000403076 LRRC55Q6ZSA7 311 aa19.72■□□□□ 0.75
SDC1-203ENST00000403076 FILIP1Q7Z7B0 1213 aa19.72■□□□□ 0.75
SDC1-203ENST00000403076 RDH13Q8NBN7 331 aa19.72■□□□□ 0.75
SDC1-203ENST00000403076 SCLYQ96I15 445 aa19.72■□□□□ 0.75
SDC1-203ENST00000403076 HTATIP2Q9BUP3 242 aa19.72■□□□□ 0.75
SDC1-203ENST00000403076 ERVK-5Q9HDB9 667 aa19.72■□□□□ 0.75
SDC1-203ENST00000403076 DMAC2Q9NW81 257 aa19.72■□□□□ 0.75
SDC1-203ENST00000403076 PRKAG2Q9UGJ0 569 aa19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms