RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 COG2Q14746 738 aa10.75□□□□□ -0.69
COL17A1-203ENST00000393211 ARHGAP44Q17R89 818 aa10.75□□□□□ -0.69
COL17A1-203ENST00000393211 ZNF568Q3ZCX4 644 aa10.75□□□□□ -0.69
COL17A1-203ENST00000393211 B3GNT9Q6UX72 402 aa10.75□□□□□ -0.69
COL17A1-203ENST00000393211 SLC13A5Q86YT5 568 aaPredicted RBP10.75□□□□□ -0.69
COL17A1-203ENST00000393211 SLC17A8Q8NDX2 589 aa10.75□□□□□ -0.69
COL17A1-203ENST00000393211 CYP2W1Q8TAV3 490 aa10.75□□□□□ -0.69
COL17A1-203ENST00000393211 C18orf8Q96DM3 657 aa10.75□□□□□ -0.69
COL17A1-203ENST00000393211 ACCSQ96QU6 501 aa10.75□□□□□ -0.69
COL17A1-203ENST00000393211 RIT2Q99578 217 aa10.75□□□□□ -0.69
COL17A1-203ENST00000393211 WDR18Q9BV38 432 aa10.75□□□□□ -0.69
COL17A1-203ENST00000393211 TIPINQ9BVW5 301 aa10.75□□□□□ -0.69
COL17A1-203ENST00000393211 SEMA4AQ9H3S1 761 aa10.75□□□□□ -0.69
COL17A1-203ENST00000393211 ST6GALNAC4Q9H4F1 302 aa10.75□□□□□ -0.69
COL17A1-203ENST00000393211 UBE2TQ9NPD8 197 aaPredicted RBP10.75□□□□□ -0.69
COL17A1-203ENST00000393211 TPX2Q9ULW0 747 aaKnown RBP10.75□□□□□ -0.69
COL17A1-203ENST00000393211 ATRNL1Q5VV63 1379 aa10.75□□□□□ -0.69
COL17A1-203ENST00000393211 AFF2P51816 1311 aa10.74□□□□□ -0.69
COL17A1-203ENST00000393211 ADAMTSL1Q8N6G6 1762 aa10.74□□□□□ -0.69
COL17A1-203ENST00000393211 TLDC2A0PJX2 215 aa10.74□□□□□ -0.69
COL17A1-203ENST00000393211 ARHGEF35A5YM69 484 aa10.74□□□□□ -0.69
COL17A1-203ENST00000393211 POLRMTO00411 1230 aaKnown RBP10.74□□□□□ -0.69
COL17A1-203ENST00000393211 KIF1CO43896 1103 aaKnown RBP10.74□□□□□ -0.69
COL17A1-203ENST00000393211 ENTPD3O75355 529 aa10.74□□□□□ -0.69
COL17A1-203ENST00000393211 TCEA3O75764 348 aa10.74□□□□□ -0.69
COL17A1-203ENST00000393211 POLR2MP0CAP2 368 aa10.74□□□□□ -0.69
COL17A1-203ENST00000393211 ITIH2P19823 946 aa10.74□□□□□ -0.69
COL17A1-203ENST00000393211 COMTP21964 271 aa10.74□□□□□ -0.69
COL17A1-203ENST00000393211 POLD1P28340 1107 aa10.74□□□□□ -0.69
COL17A1-203ENST00000393211 NF2P35240 595 aa10.74□□□□□ -0.69
COL17A1-203ENST00000393211 ELF3P78545 371 aaPredicted RBP10.74□□□□□ -0.69
COL17A1-203ENST00000393211 MKRN3Q13064 507 aaKnown RBP10.74□□□□□ -0.69
COL17A1-203ENST00000393211 CALCOCO2Q13137 446 aa10.74□□□□□ -0.69
COL17A1-203ENST00000393211 AUHQ13825 339 aaKnown RBP10.74□□□□□ -0.69
COL17A1-203ENST00000393211 CNGA2Q16280 664 aa10.74□□□□□ -0.69
COL17A1-203ENST00000393211 SPRED3Q2MJR0 410 aa10.74□□□□□ -0.69
COL17A1-203ENST00000393211 CEP55Q53EZ4 464 aa10.74□□□□□ -0.69
COL17A1-203ENST00000393211 TRPM8Q7Z2W7 1104 aa10.74□□□□□ -0.69
COL17A1-203ENST00000393211 ZFPM1Q8IX07 1006 aa10.74□□□□□ -0.69
COL17A1-203ENST00000393211 CCDC105Q8IYK2 499 aa10.74□□□□□ -0.69
COL17A1-203ENST00000393211 FAM71AQ8IYT1 594 aa10.74□□□□□ -0.69
COL17A1-203ENST00000393211 LRRC34Q8IZ02 419 aa10.74□□□□□ -0.69
COL17A1-203ENST00000393211 RPUSD2Q8IZ73 545 aaKnown RBP10.74□□□□□ -0.69
COL17A1-203ENST00000393211 IWS1Q96ST2 819 aa10.74□□□□□ -0.69
COL17A1-203ENST00000393211 TEKT3Q9BXF9 490 aa10.74□□□□□ -0.69
COL17A1-203ENST00000393211 ATP6V0A4Q9HBG4 840 aa10.74□□□□□ -0.69
COL17A1-203ENST00000393211 TMOD4Q9NZQ9 345 aa10.74□□□□□ -0.69
COL17A1-203ENST00000393211 LARSQ9P2J5 1176 aaKnown RBP10.74□□□□□ -0.69
COL17A1-203ENST00000393211 FAM198AQ9UFP1 575 aa10.74□□□□□ -0.69
COL17A1-203ENST00000393211 GTF3C4Q9UKN8 822 aa10.74□□□□□ -0.69
COL17A1-203ENST00000393211 PRR12Q9ULL5 1215 aa10.74□□□□□ -0.69
COL17A1-203ENST00000393211 MYH11P35749 1972 aa10.74□□□□□ -0.69
COL17A1-203ENST00000393211 EMSYQ7Z589 1322 aa10.74□□□□□ -0.69
COL17A1-203ENST00000393211 DDTLA6NHG4 134 aaPredicted RBP10.73□□□□□ -0.69
COL17A1-203ENST00000393211 G3V3G9 751 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 O00370 1275 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 FSCN2O14926 492 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 PLA2G6O60733 806 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 ECEL1O95672 775 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 OAS1P00973 400 aaKnown RBP10.73□□□□□ -0.69
COL17A1-203ENST00000393211 VIL1P09327 827 aaKnown RBP10.73□□□□□ -0.69
COL17A1-203ENST00000393211 POTEJP0CG39 1038 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 NPR1P16066 1061 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 ALDH1B1P30837 517 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 HOXA13P31271 388 aaPredicted RBP10.73□□□□□ -0.69
COL17A1-203ENST00000393211 MFAP3P55082 362 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 RWDD2BP57060 319 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 IFI35P80217 286 aaPredicted RBP10.73□□□□□ -0.69
COL17A1-203ENST00000393211 ENPEPQ07075 957 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 SIX1Q15475 284 aaPredicted RBP10.73□□□□□ -0.69
COL17A1-203ENST00000393211 RBM26Q5T8P6 1007 aaKnown RBP10.73□□□□□ -0.69
COL17A1-203ENST00000393211 DCAF8Q5TAQ9 597 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 TTC27Q6P3X3 843 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 ADAT2Q7Z6V5 191 aaKnown RBP10.73□□□□□ -0.69
COL17A1-203ENST00000393211 FAM228AQ86W67 206 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 PALB2Q86YC2 1186 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 CCDC63Q8NA47 563 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 KRT35Q92764 455 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 HOOK2Q96ED9 719 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 NGLY1Q96IV0 654 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 TMX4Q9H1E5 349 aaPredicted RBP10.73□□□□□ -0.69
COL17A1-203ENST00000393211 DEFB129Q9H1M3 183 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 BCAS3Q9H6U6 928 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 LRRC4CQ9HCJ2 640 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.73□□□□□ -0.69
COL17A1-203ENST00000393211 NOCTQ9UK39 431 aaKnown RBP10.73□□□□□ -0.69
COL17A1-203ENST00000393211 DBR1Q9UK59 544 aaKnown RBP10.73□□□□□ -0.69
COL17A1-203ENST00000393211 MRPL11Q9Y3B7 192 aaKnown RBP10.73□□□□□ -0.69
COL17A1-203ENST00000393211 NRXN2Q9P2S2 1712 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 SNX3O60493 162 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 HIP1RO75146 1068 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 ATP6V1G2O95670 118 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 VIMP08670 466 aaKnown RBP10.73□□□□□ -0.69
COL17A1-203ENST00000393211 PYGMP11217 842 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 ELF1P32519 619 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 COPB2P35606 906 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 STAT2P52630 851 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 MESDQ14696 234 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 SLC27A3Q5K4L6 730 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 STRIP1Q5VSL9 837 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms