RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 DENND3A2RUS2 1198 aa23.51■■□□□ 1.35
SHMT1-202ENST00000352886 HSD17B3P37058 310 aa23.51■■□□□ 1.35
SHMT1-202ENST00000352886 IRX5P78411 483 aaPredicted RBP23.51■■□□□ 1.35
SHMT1-202ENST00000352886 ZNF211Q13398 564 aaPredicted RBP23.51■■□□□ 1.35
SHMT1-202ENST00000352886 NBPF12Q5TAG4 269 aaPredicted RBP23.51■■□□□ 1.35
SHMT1-202ENST00000352886 ADAT2Q7Z6V5 191 aaKnown RBP23.51■■□□□ 1.35
SHMT1-202ENST00000352886 ALG3Q92685 438 aa23.51■■□□□ 1.35
SHMT1-202ENST00000352886 SEMA4DQ92854 862 aa23.51■■□□□ 1.35
SHMT1-202ENST00000352886 KREMEN1Q96MU8 473 aa23.51■■□□□ 1.35
SHMT1-202ENST00000352886 GRIN2DO15399 1336 aa23.51■■□□□ 1.35
SHMT1-202ENST00000352886 CCND2P30279 289 aa23.5■■□□□ 1.35
SHMT1-202ENST00000352886 GPC5P78333 572 aa23.5■■□□□ 1.35
SHMT1-202ENST00000352886 SKOR1P84550 965 aa23.5■■□□□ 1.35
SHMT1-202ENST00000352886 SKIDA1Q1XH10 827 aa23.5■■□□□ 1.35
SHMT1-202ENST00000352886 NOP9Q86U38 636 aaKnown RBP23.5■■□□□ 1.35
SHMT1-202ENST00000352886 VSIG10LQ86VR7 867 aa23.5■■□□□ 1.35
SHMT1-202ENST00000352886 FAM71AQ8IYT1 594 aa23.5■■□□□ 1.35
SHMT1-202ENST00000352886 PCDHB18PQ96TA0 734 aa23.5■■□□□ 1.35
SHMT1-202ENST00000352886 ACP6Q9NPH0 428 aa23.5■■□□□ 1.35
SHMT1-202ENST00000352886 KMT5AQ9NQR1 393 aa23.5■■□□□ 1.35
SHMT1-202ENST00000352886 TMOD4Q9NZQ9 345 aa23.5■■□□□ 1.35
SHMT1-202ENST00000352886 HACL1Q9UJ83 578 aa23.5■■□□□ 1.35
SHMT1-202ENST00000352886 RRP15Q9Y3B9 282 aaKnown RBP23.5■■□□□ 1.35
SHMT1-202ENST00000352886 NR3C2P08235 984 aa23.5■■□□□ 1.35
SHMT1-202ENST00000352886 SOX10P56693 466 aa23.5■■□□□ 1.35
SHMT1-202ENST00000352886 POU5F1Q01860 360 aaKnown RBP23.5■■□□□ 1.35
SHMT1-202ENST00000352886 BSNDQ8WZ55 320 aa23.5■■□□□ 1.35
SHMT1-202ENST00000352886 LRRC45Q96CN5 670 aa23.5■■□□□ 1.35
SHMT1-202ENST00000352886 POP1Q99575 1024 aaKnown RBP23.5■■□□□ 1.35
SHMT1-202ENST00000352886 GABBR1Q9UBS5 961 aa23.5■■□□□ 1.35
SHMT1-202ENST00000352886 NOCTQ9UK39 431 aaKnown RBP23.5■■□□□ 1.35
SHMT1-202ENST00000352886 USP20Q9Y2K6 914 aa23.5■■□□□ 1.35
SHMT1-202ENST00000352886 UTP11Q9Y3A2 253 aaKnown RBP23.5■■□□□ 1.35
SHMT1-202ENST00000352886 ARID2Q68CP9 1835 aa23.49■■□□□ 1.35
SHMT1-202ENST00000352886 CYP26A1O43174 497 aa23.49■■□□□ 1.35
SHMT1-202ENST00000352886 RTN2O75298 545 aa23.49■■□□□ 1.35
SHMT1-202ENST00000352886 FDX1P10109 184 aa23.49■■□□□ 1.35
SHMT1-202ENST00000352886 CHRNB2P17787 502 aa23.49■■□□□ 1.35
SHMT1-202ENST00000352886 BACE1P56817 501 aa23.49■■□□□ 1.35
SHMT1-202ENST00000352886 CEP85LQ5SZL2 805 aa23.49■■□□□ 1.35
SHMT1-202ENST00000352886 KRT39Q6A163 491 aa23.49■■□□□ 1.35
SHMT1-202ENST00000352886 SLC47A2Q86VL8 602 aa23.49■■□□□ 1.35
SHMT1-202ENST00000352886 MICALL2Q8IY33 904 aa23.49■■□□□ 1.35
SHMT1-202ENST00000352886 RDM1Q8NG50 284 aa23.49■■□□□ 1.35
SHMT1-202ENST00000352886 PARD3BQ8TEW8 1205 aa23.49■■□□□ 1.35
SHMT1-202ENST00000352886 CEP170P1Q96L14 293 aa23.49■■□□□ 1.35
SHMT1-202ENST00000352886 NAP1L3Q99457 506 aaPredicted RBP23.49■■□□□ 1.35
SHMT1-202ENST00000352886 CHORDC1Q9UHD1 332 aaPredicted RBP23.49■■□□□ 1.35
SHMT1-202ENST00000352886 PFASO15067 1338 aa23.49■■□□□ 1.35
SHMT1-202ENST00000352886 EIF3HO15372 352 aaKnown RBP eCLIP23.49■■□□□ 1.35
SHMT1-202ENST00000352886 FLT3P36888 993 aa23.49■■□□□ 1.35
SHMT1-202ENST00000352886 ATP1A2P50993 1020 aa23.49■■□□□ 1.35
SHMT1-202ENST00000352886 PTENP60484 403 aa23.49■■□□□ 1.35
SHMT1-202ENST00000352886 UAP1Q16222 522 aaPredicted RBP23.49■■□□□ 1.35
SHMT1-202ENST00000352886 C11orf63Q6NUN7 778 aa23.49■■□□□ 1.35
SHMT1-202ENST00000352886 DEFB132Q7Z7B7 95 aa23.49■■□□□ 1.35
SHMT1-202ENST00000352886 SEC14L1Q92503 715 aa23.49■■□□□ 1.35
SHMT1-202ENST00000352886 GPRASP2Q96D09 838 aa23.49■■□□□ 1.35
SHMT1-202ENST00000352886 HVCN1Q96D96 273 aa23.49■■□□□ 1.35
SHMT1-202ENST00000352886 RLFQ13129 1914 aa23.48■■□□□ 1.35
SHMT1-202ENST00000352886 ZNFX1Q9P2E3 1918 aaKnown RBP23.48■■□□□ 1.35
SHMT1-202ENST00000352886 TMEM110-MUSTN1A8MSY1 372 aa23.48■■□□□ 1.35
SHMT1-202ENST00000352886 ZNF862O60290 1169 aa23.48■■□□□ 1.35
SHMT1-202ENST00000352886 COPB2P35606 906 aa23.48■■□□□ 1.35
SHMT1-202ENST00000352886 MFAP3P55082 362 aa23.48■■□□□ 1.35
SHMT1-202ENST00000352886 SNRNP48Q6IEG0 339 aaKnown RBP23.48■■□□□ 1.35
SHMT1-202ENST00000352886 XRRA1Q6P2D8 792 aa23.48■■□□□ 1.35
SHMT1-202ENST00000352886 OTUD6AQ7L8S5 288 aa23.48■■□□□ 1.35
SHMT1-202ENST00000352886 TRIM51Q9BSJ1 452 aa23.48■■□□□ 1.35
SHMT1-202ENST00000352886 DPH5Q9H2P9 285 aa23.48■■□□□ 1.35
SHMT1-202ENST00000352886 ERVK-5Q9HDB9 667 aa23.48■■□□□ 1.35
SHMT1-202ENST00000352886 GOLGA6L10A0A0M3HER8 536 aa23.48■■□□□ 1.35
SHMT1-202ENST00000352886 SF3B2Q13435 895 aaKnown RBP23.48■■□□□ 1.35
SHMT1-202ENST00000352886 DALRD3Q5D0E6 543 aaKnown RBP23.48■■□□□ 1.35
SHMT1-202ENST00000352886 ZKSCAN4Q969J2 545 aaPredicted RBP23.48■■□□□ 1.35
SHMT1-202ENST00000352886 ATP6V1G3Q96LB4 118 aa23.48■■□□□ 1.35
SHMT1-202ENST00000352886 MYO1CO00159 1063 aa23.47■■□□□ 1.35
SHMT1-202ENST00000352886 ATMINO43313 823 aaPredicted RBP23.47■■□□□ 1.35
SHMT1-202ENST00000352886 RPS12P25398 132 aaKnown RBP23.47■■□□□ 1.35
SHMT1-202ENST00000352886 MCCD1P59942 119 aaPredicted RBP23.47■■□□□ 1.35
SHMT1-202ENST00000352886 TCEAL1Q15170 157 aa23.47■■□□□ 1.35
SHMT1-202ENST00000352886 AADACL2Q6P093 401 aa23.47■■□□□ 1.35
SHMT1-202ENST00000352886 SLC39A4Q6P5W5 647 aa23.47■■□□□ 1.35
SHMT1-202ENST00000352886 SHC3Q92529 594 aa23.47■■□□□ 1.35
SHMT1-202ENST00000352886 KIFAP3Q92845 792 aa23.47■■□□□ 1.35
SHMT1-202ENST00000352886 SENP7Q9BQF6 1050 aa23.47■■□□□ 1.35
SHMT1-202ENST00000352886 TRIM31Q9BZY9 425 aa23.47■■□□□ 1.35
SHMT1-202ENST00000352886 TMEM8AQ9HCN3 771 aa23.47■■□□□ 1.35
SHMT1-202ENST00000352886 TOPORSQ9NS56 1045 aaPredicted RBP23.47■■□□□ 1.35
SHMT1-202ENST00000352886 PHIPQ8WWQ0 1821 aa23.47■■□□□ 1.35
SHMT1-202ENST00000352886 MMEP08473 750 aa23.47■■□□□ 1.35
SHMT1-202ENST00000352886 CTNNA1P35221 906 aaKnown RBP23.47■■□□□ 1.35
SHMT1-202ENST00000352886 PDCLQ13371 301 aa23.47■■□□□ 1.35
SHMT1-202ENST00000352886 LRIG3Q6UXM1 1119 aa23.47■■□□□ 1.35
SHMT1-202ENST00000352886 SCYL3Q8IZE3 742 aa23.47■■□□□ 1.35
SHMT1-202ENST00000352886 POMGNT1Q8WZA1 660 aa23.47■■□□□ 1.35
SHMT1-202ENST00000352886 KRT35Q92764 455 aa23.47■■□□□ 1.35
SHMT1-202ENST00000352886 NTPCRQ9BSD7 190 aaKnown RBP23.47■■□□□ 1.35
SHMT1-202ENST00000352886 RABEP2Q9H5N1 569 aa23.47■■□□□ 1.35
SHMT1-202ENST00000352886 FAM114A2Q9NRY5 505 aa23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms