RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 XPOTO43592 962 aaKnown RBP12.24□□□□□ -0.45
VPS39-201ENST00000318006 SERPINB4P48594 390 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 PEX3P56589 373 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 TFAMQ00059 246 aaKnown RBP12.24□□□□□ -0.45
VPS39-201ENST00000318006 COASYQ13057 564 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 KIF22Q14807 665 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 POTEBQ6S5H4 581 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 EEPD1Q7L9B9 569 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 METTL16Q86W50 562 aaKnown RBP12.24□□□□□ -0.45
VPS39-201ENST00000318006 C3orf20Q8ND61 904 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 CRAMP1Q96RY5 1269 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 RMDN3Q96TC7 470 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.24□□□□□ -0.45
VPS39-201ENST00000318006 DLGAP2Q9P1A6 1054 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 FIS1Q9Y3D6 152 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 JCADQ9P266 1359 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 GOLGA8SH3BPF8 625 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 ZRANB2O95218 330 aaKnown RBP eCLIP12.23□□□□□ -0.45
VPS39-201ENST00000318006 ZNF211Q13398 564 aaPredicted RBP12.23□□□□□ -0.45
VPS39-201ENST00000318006 MTMR1Q13613 665 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 RAD9BQ6WBX8 426 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 DTX3LQ8TDB6 740 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 THAP11Q96EK4 314 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 PALM3A6NDB9 673 aaPredicted RBP12.23□□□□□ -0.45
VPS39-201ENST00000318006 TDP2O95551 362 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 GGPS1O95749 300 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 HDAC4P56524 1084 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 TEKT4Q8WW24 435 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 BTBD6Q96KE9 485 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 RNPC3Q96LT9 517 aaKnown RBP12.23□□□□□ -0.45
VPS39-201ENST00000318006 CHP1Q99653 195 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 SCHIP1Q9P0W5 487 aaPredicted RBP12.23□□□□□ -0.45
VPS39-201ENST00000318006 MAP2P11137 1827 aaKnown RBP12.23□□□□□ -0.45
VPS39-201ENST00000318006 RNF103-CHMP3A0A140T963 221 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 K7ERI5 159 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 SRGAP2BP0DMP2 458 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 IREB2P48200 963 aaKnown RBP12.23□□□□□ -0.45
VPS39-201ENST00000318006 AP1B1Q10567 949 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 CCDC137Q6PK04 289 aaKnown RBP12.23□□□□□ -0.45
VPS39-201ENST00000318006 DNAAF3Q8N9W5 541 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 KCTD6Q8NC69 237 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 RBM41Q96IZ5 413 aaKnown RBP12.23□□□□□ -0.45
VPS39-201ENST00000318006 PHF20Q9BVI0 1012 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 MOV10L1Q9BXT6 1211 aaKnown RBP12.23□□□□□ -0.45
VPS39-201ENST00000318006 EPB41L4AQ9HCS5 686 aaPredicted RBP12.23□□□□□ -0.45
VPS39-201ENST00000318006 GOLGA8IPA6NC78 632 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 GOLGA8JA6NMD2 632 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 NR3C1P04150 777 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 SERPINB3P29508 390 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 NOP14P78316 857 aaKnown RBP12.23□□□□□ -0.45
VPS39-201ENST00000318006 HIC1Q14526 733 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 STAT4Q14765 748 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 PRR5LQ6MZQ0 368 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 GUF1Q8N442 669 aaKnown RBP12.23□□□□□ -0.45
VPS39-201ENST00000318006 ZC3H15Q8WU90 426 aaKnown RBP12.23□□□□□ -0.45
VPS39-201ENST00000318006 ZBTB10Q96DT7 871 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 CACYBPQ9HB71 228 aaKnown RBP12.23□□□□□ -0.45
VPS39-201ENST00000318006 TBC1D22BQ9NU19 505 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 TBC1D23Q9NUY8 699 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 TRIM33Q9UPN9 1127 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 PITPNM2Q9BZ72 1349 aa12.23□□□□□ -0.45
VPS39-201ENST00000318006 ZNF233A6NK53 670 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 ARHGEF9O43307 516 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 CTCFP49711 727 aaPredicted RBP12.22□□□□□ -0.45
VPS39-201ENST00000318006 PSMC1P62191 440 aaKnown RBP12.22□□□□□ -0.45
VPS39-201ENST00000318006 OCRLQ01968 901 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 ITPK1Q13572 414 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 NR1I3Q14994 352 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 ACAD11Q709F0 780 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 MMGT1Q8N4V1 131 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 LINC00116Q8NCU8 138 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 GIPC2Q8TF65 315 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 PRPF31Q8WWY3 499 aaKnown RBP12.22□□□□□ -0.45
VPS39-201ENST00000318006 SNF8Q96H20 258 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 HIC2Q96JB3 615 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 WWP1Q9H0M0 922 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 POLD4Q9HCU8 107 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 DAGLAQ9Y4D2 1042 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 ITSN1Q15811 1721 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 USP11P51784 963 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 PDXDC1Q6P996 788 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 BZW1Q7L1Q6 419 aaKnown RBP12.22□□□□□ -0.45
VPS39-201ENST00000318006 PIK3R5Q8WYR1 880 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 KIF9Q9HAQ2 790 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 ANAPC7Q9UJX3 599 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 ABCB11O95342 1321 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 TMED10P49755 219 aaKnown RBP12.22□□□□□ -0.45
VPS39-201ENST00000318006 PADI6Q6TGC4 694 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 KDM7AQ6ZMT4 941 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 RFX8Q6ZV50 586 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 KIAA2013Q8IYS2 634 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 KAZALD1Q96I82 304 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 APOL6Q9BWW8 343 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 PDP2Q9P2J9 529 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 CNOT8Q9UFF9 292 aaKnown RBP12.22□□□□□ -0.45
VPS39-201ENST00000318006 HERC5Q9UII4 1024 aaKnown RBP12.22□□□□□ -0.45
VPS39-201ENST00000318006 SYCE1LA8MT33 242 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 WDR64B1ANS9 1081 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 IGF2BP3O00425 579 aaKnown RBP eCLIP12.22□□□□□ -0.45
VPS39-201ENST00000318006 LPXNO60711 386 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms