RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 CETN1Q12798 172 aa15.67■□□□□ 0.1
PTPN9-201ENST00000306726 CUL1Q13616 776 aa15.67■□□□□ 0.1
PTPN9-201ENST00000306726 CBWD6Q4V339 395 aa15.67■□□□□ 0.1
PTPN9-201ENST00000306726 SGO2Q562F6 1265 aa15.67■□□□□ 0.1
PTPN9-201ENST00000306726 CBWD3Q5JTY5 395 aa15.67■□□□□ 0.1
PTPN9-201ENST00000306726 CBWD5Q5RIA9 395 aa15.67■□□□□ 0.1
PTPN9-201ENST00000306726 INTS8Q75QN2 995 aaKnown RBP15.67■□□□□ 0.1
PTPN9-201ENST00000306726 SYCE1Q8N0S2 351 aa15.67■□□□□ 0.1
PTPN9-201ENST00000306726 C4orf33Q8N1A6 199 aa15.67■□□□□ 0.1
PTPN9-201ENST00000306726 DHX38Q92620 1227 aaKnown RBP15.67■□□□□ 0.1
PTPN9-201ENST00000306726 RNF25Q96BH1 459 aaPredicted RBP15.67■□□□□ 0.1
PTPN9-201ENST00000306726 ECT2Q9H8V3 914 aa15.67■□□□□ 0.1
PTPN9-201ENST00000306726 MAGEF1Q9HAY2 307 aa15.67■□□□□ 0.1
PTPN9-201ENST00000306726 SHOX2O60902 331 aaPredicted RBP15.67■□□□□ 0.1
PTPN9-201ENST00000306726 TMEM132AQ24JP5 1023 aa15.67■□□□□ 0.1
PTPN9-201ENST00000306726 ANKRD20A8PQ5CZ79 823 aa15.67■□□□□ 0.1
PTPN9-201ENST00000306726 TMC3Q7Z5M5 1100 aa15.67■□□□□ 0.1
PTPN9-201ENST00000306726 PURBQ96QR8 312 aaKnown RBP15.67■□□□□ 0.1
PTPN9-201ENST00000306726 NKIRAS1Q9NYS0 192 aa15.67■□□□□ 0.1
PTPN9-201ENST00000306726 SWAP70Q9UH65 585 aa15.67■□□□□ 0.1
PTPN9-201ENST00000306726 EMSYQ7Z589 1322 aa15.66■□□□□ 0.1
PTPN9-201ENST00000306726 F8VZ95 297 aa15.66■□□□□ 0.1
PTPN9-201ENST00000306726 IGF2BP3O00425 579 aaKnown RBP eCLIP15.66■□□□□ 0.1
PTPN9-201ENST00000306726 GNA14O95837 355 aa15.66■□□□□ 0.1
PTPN9-201ENST00000306726 GH1P01241 217 aa15.66■□□□□ 0.1
PTPN9-201ENST00000306726 COMTP21964 271 aa15.66■□□□□ 0.1
PTPN9-201ENST00000306726 MTUS1Q9ULD2 1270 aa15.66■□□□□ 0.1
PTPN9-201ENST00000306726 IQCA1LA6NCM1 817 aa15.66■□□□□ 0.1
PTPN9-201ENST00000306726 SPDYE2BA6NHP3 402 aa15.66■□□□□ 0.1
PTPN9-201ENST00000306726 EML1O00423 815 aa15.66■□□□□ 0.1
PTPN9-201ENST00000306726 GH2P01242 217 aa15.66■□□□□ 0.1
PTPN9-201ENST00000306726 SPDYE6P0CI01 402 aa15.66■□□□□ 0.1
PTPN9-201ENST00000306726 GMPSP49915 693 aaPredicted RBP15.66■□□□□ 0.1
PTPN9-201ENST00000306726 DLG4P78352 724 aa15.66■□□□□ 0.1
PTPN9-201ENST00000306726 NAIF1Q69YI7 327 aaPredicted RBP15.66■□□□□ 0.1
PTPN9-201ENST00000306726 ISLR2Q6UXK2 745 aa15.66■□□□□ 0.1
PTPN9-201ENST00000306726 ZNF365Q70YC5 407 aa15.66■□□□□ 0.1
PTPN9-201ENST00000306726 ZSWIM2Q8NEG5 633 aa15.66■□□□□ 0.1
PTPN9-201ENST00000306726 L3MBTL3Q96JM7 780 aaPredicted RBP15.66■□□□□ 0.1
PTPN9-201ENST00000306726 NSRP1Q9H0G5 558 aaKnown RBP15.66■□□□□ 0.1
PTPN9-201ENST00000306726 GPRC5CQ9NQ84 441 aa15.66■□□□□ 0.1
PTPN9-201ENST00000306726 BRAFP15056 766 aa15.66■□□□□ 0.1
PTPN9-201ENST00000306726 PSMC2P35998 433 aaKnown RBP15.66■□□□□ 0.1
PTPN9-201ENST00000306726 PSMC4P43686 418 aa15.66■□□□□ 0.1
PTPN9-201ENST00000306726 KIAA1755Q5JYT7 1200 aa15.66■□□□□ 0.1
PTPN9-201ENST00000306726 C10orf76Q5T2E6 689 aa15.66■□□□□ 0.1
PTPN9-201ENST00000306726 FAM102BQ5T8I3 360 aa15.66■□□□□ 0.1
PTPN9-201ENST00000306726 FBF1Q8TES7 1133 aa15.66■□□□□ 0.1
PTPN9-201ENST00000306726 TMEM237Q96Q45 408 aa15.66■□□□□ 0.1
PTPN9-201ENST00000306726 ETNK1Q9HBU6 452 aa15.66■□□□□ 0.1
PTPN9-201ENST00000306726 GJA3Q9Y6H8 435 aa15.66■□□□□ 0.1
PTPN9-201ENST00000306726 ZNF543Q08ER8 600 aa15.65■□□□□ 0.1
PTPN9-201ENST00000306726 SGSM3Q96HU1 749 aa15.65■□□□□ 0.1
PTPN9-201ENST00000306726 MTMR9Q96QG7 549 aa15.65■□□□□ 0.1
PTPN9-201ENST00000306726 EIF2AK1Q9BQI3 630 aaKnown RBP15.65■□□□□ 0.1
PTPN9-201ENST00000306726 C10orf88Q9H8K7 445 aa15.65■□□□□ 0.1
PTPN9-201ENST00000306726 FAM114A2Q9NRY5 505 aa15.65■□□□□ 0.1
PTPN9-201ENST00000306726 PPP2R3BQ9Y5P8 575 aa15.65■□□□□ 0.1
PTPN9-201ENST00000306726 NAV1Q8NEY1 1877 aa15.65■□□□□ 0.1
PTPN9-201ENST00000306726 TMEM120BA0PK00 339 aa15.65■□□□□ 0.1
PTPN9-201ENST00000306726 GNPTABQ3T906 1256 aa15.65■□□□□ 0.1
PTPN9-201ENST00000306726 ARSHQ5FYA8 562 aa15.65■□□□□ 0.1
PTPN9-201ENST00000306726 APOBEC3HQ6NTF7 200 aaKnown RBP15.65■□□□□ 0.1
PTPN9-201ENST00000306726 IRF2BP2Q7Z5L9 587 aa15.65■□□□□ 0.1
PTPN9-201ENST00000306726 MYOZ2Q9NPC6 264 aa15.65■□□□□ 0.1
PTPN9-201ENST00000306726 ROBO3Q96MS0 1386 aa15.65■□□□□ 0.1
PTPN9-201ENST00000306726 FAM86B1E9PN63 330 aa15.65■□□□□ 0.1
PTPN9-201ENST00000306726 FAM86B2P0C5J1 330 aa15.65■□□□□ 0.1
PTPN9-201ENST00000306726 RHBDL3P58872 404 aa15.65■□□□□ 0.1
PTPN9-201ENST00000306726 SKOR1P84550 965 aa15.65■□□□□ 0.1
PTPN9-201ENST00000306726 GIT2Q14161 759 aa15.65■□□□□ 0.1
PTPN9-201ENST00000306726 FAM83AQ86UY5 434 aa15.65■□□□□ 0.1
PTPN9-201ENST00000306726 TRIM7Q9C029 511 aa15.65■□□□□ 0.1
PTPN9-201ENST00000306726 RNF14Q9UBS8 474 aa15.65■□□□□ 0.1
PTPN9-201ENST00000306726 FOCADQ5VW36 1801 aa15.65■□□□□ 0.1
PTPN9-201ENST00000306726 APOBEC3FQ8IUX4 373 aaKnown RBP15.64■□□□□ 0.09
PTPN9-201ENST00000306726 CNPY4Q8N129 248 aa15.64■□□□□ 0.09
PTPN9-201ENST00000306726 ZBED3Q96IU2 234 aaPredicted RBP15.64■□□□□ 0.09
PTPN9-201ENST00000306726 INTS2Q9H0H0 1204 aaKnown RBP15.64■□□□□ 0.09
PTPN9-201ENST00000306726 TDRD3Q9H7E2 651 aaKnown RBP15.64■□□□□ 0.09
PTPN9-201ENST00000306726 GPRC5DQ9NZD1 345 aa15.64■□□□□ 0.09
PTPN9-201ENST00000306726 ANKRD63C9JTQ0 380 aa15.64■□□□□ 0.09
PTPN9-201ENST00000306726 F5H423 210 aaPredicted RBP15.64■□□□□ 0.09
PTPN9-201ENST00000306726 TRAPPC3O43617 180 aa15.64■□□□□ 0.09
PTPN9-201ENST00000306726 FERP16591 822 aa15.64■□□□□ 0.09
PTPN9-201ENST00000306726 RPL21P46778 160 aaKnown RBP15.64■□□□□ 0.09
PTPN9-201ENST00000306726 SPDYE2Q495Y8 402 aa15.64■□□□□ 0.09
PTPN9-201ENST00000306726 ASPRV1Q53RT3 343 aa15.64■□□□□ 0.09
PTPN9-201ENST00000306726 FIGNQ5HY92 759 aa15.64■□□□□ 0.09
PTPN9-201ENST00000306726 MDH1BQ5I0G3 518 aa15.64■□□□□ 0.09
PTPN9-201ENST00000306726 CPA5Q8WXQ8 436 aa15.64■□□□□ 0.09
PTPN9-201ENST00000306726 ERP44Q9BS26 406 aa15.64■□□□□ 0.09
PTPN9-201ENST00000306726 TOPORSQ9NS56 1045 aaPredicted RBP15.64■□□□□ 0.09
PTPN9-201ENST00000306726 CNOT7Q9UIV1 285 aaKnown RBP15.64■□□□□ 0.09
PTPN9-201ENST00000306726 ZNF541Q9H0D2 1346 aa15.64■□□□□ 0.09
PTPN9-201ENST00000306726 KDM3AQ9Y4C1 1321 aa15.64■□□□□ 0.09
PTPN9-201ENST00000306726 LAMB1P07942 1786 aa15.64■□□□□ 0.09
PTPN9-201ENST00000306726 CCT8L1PA6NM43 557 aa15.64■□□□□ 0.09
PTPN9-201ENST00000306726 SLC16A4O15374 487 aa15.64■□□□□ 0.09
PTPN9-201ENST00000306726 HSPA9P38646 679 aaKnown RBP15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms