RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 FAM170BA6NMN3 283 aa18.41■□□□□ 0.54
CLN3-264ENST00000637985 C2CD2LO14523 706 aa18.41■□□□□ 0.54
CLN3-264ENST00000637985 DDHD2O94830 711 aa18.41■□□□□ 0.54
CLN3-264ENST00000637985 SOD2P04179 222 aa18.41■□□□□ 0.54
CLN3-264ENST00000637985 ALDH2P05091 517 aa18.41■□□□□ 0.54
CLN3-264ENST00000637985 MYBP10242 640 aa18.41■□□□□ 0.54
CLN3-264ENST00000637985 SREBF1P36956 1147 aa18.41■□□□□ 0.54
CLN3-264ENST00000637985 AK2P54819 239 aa18.41■□□□□ 0.54
CLN3-264ENST00000637985 MLF2Q15773 248 aaPredicted RBP18.41■□□□□ 0.54
CLN3-264ENST00000637985 ZNF746Q6NUN9 644 aaPredicted RBP18.41■□□□□ 0.54
CLN3-264ENST00000637985 SYNE3Q6ZMZ3 975 aa18.41■□□□□ 0.54
CLN3-264ENST00000637985 GET4Q7L5D6 327 aaPredicted RBP18.41■□□□□ 0.54
CLN3-264ENST00000637985 HEATR3Q7Z4Q2 680 aa18.41■□□□□ 0.54
CLN3-264ENST00000637985 FANCBQ8NB91 859 aa18.41■□□□□ 0.54
CLN3-264ENST00000637985 NETO1Q8TDF5 533 aa18.41■□□□□ 0.54
CLN3-264ENST00000637985 NLRP7Q8WX94 980 aa18.41■□□□□ 0.54
CLN3-264ENST00000637985 SCLT1Q96NL6 688 aa18.41■□□□□ 0.54
CLN3-264ENST00000637985 ANO3Q9BYT9 981 aa18.41■□□□□ 0.54
CLN3-264ENST00000637985 FAM105AQ9NUU6 356 aa18.41■□□□□ 0.54
CLN3-264ENST00000637985 GMEB2Q9UKD1 530 aa18.41■□□□□ 0.54
CLN3-264ENST00000637985 SSX2IPQ9Y2D8 614 aa18.41■□□□□ 0.54
CLN3-264ENST00000637985 ZFP37Q9Y6Q3 630 aaPredicted RBP18.41■□□□□ 0.54
CLN3-264ENST00000637985 MTCL1Q9Y4B5 1905 aaKnown RBP18.41■□□□□ 0.54
CLN3-264ENST00000637985 CNOT1A5YKK6 2376 aaKnown RBP18.4■□□□□ 0.54
CLN3-264ENST00000637985 FAM86B1E9PN63 330 aa18.4■□□□□ 0.54
CLN3-264ENST00000637985 IPO5O00410 1097 aaKnown RBP18.4■□□□□ 0.54
CLN3-264ENST00000637985 URODP06132 367 aa18.4■□□□□ 0.54
CLN3-264ENST00000637985 FAM86B2P0C5J1 330 aa18.4■□□□□ 0.54
CLN3-264ENST00000637985 KRT32Q14532 448 aa18.4■□□□□ 0.54
CLN3-264ENST00000637985 UBXN2BQ14CS0 331 aa18.4■□□□□ 0.54
CLN3-264ENST00000637985 SLC44A4Q53GD3 710 aa18.4■□□□□ 0.54
CLN3-264ENST00000637985 TWF2Q6IBS0 349 aaKnown RBP18.4■□□□□ 0.54
CLN3-264ENST00000637985 DHX32Q7L7V1 743 aaKnown RBP18.4■□□□□ 0.54
CLN3-264ENST00000637985 PLA2G4DQ86XP0 818 aa18.4■□□□□ 0.54
CLN3-264ENST00000637985 SMAP1Q8IYB5 467 aaPredicted RBP18.4■□□□□ 0.54
CLN3-264ENST00000637985 FGF14Q92915 247 aa18.4■□□□□ 0.54
CLN3-264ENST00000637985 CLDN23Q96B33 292 aa18.4■□□□□ 0.54
CLN3-264ENST00000637985 FAM167AQ96KS9 214 aa18.4■□□□□ 0.54
CLN3-264ENST00000637985 TMEM175Q9BSA9 504 aa18.4■□□□□ 0.54
CLN3-264ENST00000637985 LRRC2Q9BYS8 371 aa18.4■□□□□ 0.54
CLN3-264ENST00000637985 PIDD1Q9HB75 910 aa18.4■□□□□ 0.54
CLN3-264ENST00000637985 RXFP1Q9HBX9 757 aa18.4■□□□□ 0.54
CLN3-264ENST00000637985 RIC8AQ9NPQ8 531 aa18.4■□□□□ 0.54
CLN3-264ENST00000637985 GABBR1Q9UBS5 961 aa18.4■□□□□ 0.54
CLN3-264ENST00000637985 FAN1Q9Y2M0 1017 aa18.4■□□□□ 0.54
CLN3-264ENST00000637985 PCDHA10Q9Y5I2 948 aa18.4■□□□□ 0.54
CLN3-264ENST00000637985 WDR81Q562E7 1941 aa18.39■□□□□ 0.53
CLN3-264ENST00000637985 DOCK6Q96HP0 2047 aa18.39■□□□□ 0.53
CLN3-264ENST00000637985 IGLV3-22A0A075B6J6 115 aa18.39■□□□□ 0.53
CLN3-264ENST00000637985 NRP1O14786 923 aa18.39■□□□□ 0.53
CLN3-264ENST00000637985 C1RP00736 705 aa18.39■□□□□ 0.53
CLN3-264ENST00000637985 PSAPP07602 524 aa18.39■□□□□ 0.53
CLN3-264ENST00000637985 SPATA31D3P0C874 917 aa18.39■□□□□ 0.53
CLN3-264ENST00000637985 RXRAP19793 462 aa18.39■□□□□ 0.53
CLN3-264ENST00000637985 ZNF76P36508 570 aa18.39■□□□□ 0.53
CLN3-264ENST00000637985 EXOSC10Q01780 885 aaKnown RBP18.39■□□□□ 0.53
CLN3-264ENST00000637985 TYW1BQ6NUM6 668 aa18.39■□□□□ 0.53
CLN3-264ENST00000637985 TSSK4Q6SA08 328 aa18.39■□□□□ 0.53
CLN3-264ENST00000637985 PARM1Q6UWI2 310 aa18.39■□□□□ 0.53
CLN3-264ENST00000637985 RSPO2Q6UXX9 243 aaPredicted RBP18.39■□□□□ 0.53
CLN3-264ENST00000637985 SPATA31D4Q6ZUB0 917 aa18.39■□□□□ 0.53
CLN3-264ENST00000637985 TAS1R1Q7RTX1 841 aa18.39■□□□□ 0.53
CLN3-264ENST00000637985 RNF168Q8IYW5 571 aaPredicted RBP18.39■□□□□ 0.53
CLN3-264ENST00000637985 CCDC82Q8N4S0 544 aa18.39■□□□□ 0.53
CLN3-264ENST00000637985 PHKBQ93100 1093 aa18.39■□□□□ 0.53
CLN3-264ENST00000637985 HERC2P3Q9BVR0 1158 aa18.39■□□□□ 0.53
CLN3-264ENST00000637985 FAM126AQ9BYI3 521 aaPredicted RBP18.39■□□□□ 0.53
CLN3-264ENST00000637985 GCOM2Q9BZD3 368 aaPredicted RBP18.39■□□□□ 0.53
CLN3-264ENST00000637985 PRKD2Q9BZL6 878 aa18.39■□□□□ 0.53
CLN3-264ENST00000637985 PLEKHA4Q9H4M7 779 aa18.39■□□□□ 0.53
CLN3-264ENST00000637985 LTB4R2Q9NPC1 389 aa18.39■□□□□ 0.53
CLN3-264ENST00000637985 PRMT8Q9NR22 394 aaPredicted RBP18.39■□□□□ 0.53
CLN3-264ENST00000637985 ZDHHC7Q9NXF8 308 aa18.39■□□□□ 0.53
CLN3-264ENST00000637985 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.39■□□□□ 0.53
CLN3-264ENST00000637985 ASPMQ8IZT6 3477 aa18.38■□□□□ 0.53
CLN3-264ENST00000637985 FASNP49327 2511 aaKnown RBP18.38■□□□□ 0.53
CLN3-264ENST00000637985 EFEMP2O95967 443 aa18.38■□□□□ 0.53
CLN3-264ENST00000637985 HMGB1P09429 215 aaKnown RBP18.38■□□□□ 0.53
CLN3-264ENST00000637985 RAB27AP51159 221 aa18.38■□□□□ 0.53
CLN3-264ENST00000637985 AFF1P51825 1210 aaKnown RBP18.38■□□□□ 0.53
CLN3-264ENST00000637985 SPEM2Q0P670 501 aa18.38■□□□□ 0.53
CLN3-264ENST00000637985 ZBTB41Q5SVQ8 909 aa18.38■□□□□ 0.53
CLN3-264ENST00000637985 WWC2Q6AWC2 1192 aa18.38■□□□□ 0.53
CLN3-264ENST00000637985 TMTC3Q6ZXV5 915 aa18.38■□□□□ 0.53
CLN3-264ENST00000637985 URGCPQ8TCY9 931 aa18.38■□□□□ 0.53
CLN3-264ENST00000637985 TBC1D22BQ9NU19 505 aa18.38■□□□□ 0.53
CLN3-264ENST00000637985 RBM28Q9NW13 759 aaKnown RBP18.38■□□□□ 0.53
CLN3-264ENST00000637985 MARCH5Q9NX47 278 aa18.38■□□□□ 0.53
CLN3-264ENST00000637985 PIN4Q9Y237 131 aaKnown RBP18.38■□□□□ 0.53
CLN3-264ENST00000637985 FRYQ5TBA9 3013 aa18.38■□□□□ 0.53
CLN3-264ENST00000637985 ZNF862O60290 1169 aa18.37■□□□□ 0.53
CLN3-264ENST00000637985 SFPQP23246 707 aaKnown RBP eCLIP18.37■□□□□ 0.53
CLN3-264ENST00000637985 GLUD2P49448 558 aa18.37■□□□□ 0.53
CLN3-264ENST00000637985 CDC42EP1Q00587 391 aa18.37■□□□□ 0.53
CLN3-264ENST00000637985 DMWDQ09019 674 aa18.37■□□□□ 0.53
CLN3-264ENST00000637985 DRP2Q13474 957 aa18.37■□□□□ 0.53
CLN3-264ENST00000637985 APOA5Q6Q788 366 aa18.37■□□□□ 0.53
CLN3-264ENST00000637985 AGMOQ6ZNB7 445 aa18.37■□□□□ 0.53
CLN3-264ENST00000637985 MICU3Q86XE3 530 aa18.37■□□□□ 0.53
CLN3-264ENST00000637985 RASEFQ8IZ41 740 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms