RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 H2AFVQ71UI9 128 aa17.04■□□□□ 0.32
CPSF1-213ENST00000620219 CATSPER4Q7RTX7 472 aa17.04■□□□□ 0.32
CPSF1-213ENST00000620219 GPD1LQ8N335 351 aa17.04■□□□□ 0.32
CPSF1-213ENST00000620219 L3MBTL3Q96JM7 780 aaPredicted RBP17.04■□□□□ 0.32
CPSF1-213ENST00000620219 PDE11AQ9HCR9 933 aa17.04■□□□□ 0.32
CPSF1-213ENST00000620219 TOPORSQ9NS56 1045 aaPredicted RBP17.04■□□□□ 0.32
CPSF1-213ENST00000620219 CGNQ9P2M7 1197 aaKnown RBP17.04■□□□□ 0.32
CPSF1-213ENST00000620219 PHLPP2Q6ZVD8 1323 aa17.03■□□□□ 0.32
CPSF1-213ENST00000620219 PRKCBP05771 671 aa17.03■□□□□ 0.32
CPSF1-213ENST00000620219 TGFB3P10600 412 aa17.03■□□□□ 0.32
CPSF1-213ENST00000620219 ALKBH5Q6P6C2 394 aaKnown RBP17.03■□□□□ 0.32
CPSF1-213ENST00000620219 KCTD17Q8N5Z5 321 aa17.03■□□□□ 0.32
CPSF1-213ENST00000620219 CRYGNQ8WXF5 182 aa17.03■□□□□ 0.32
CPSF1-213ENST00000620219 IGSF9BQ9UPX0 1349 aa17.03■□□□□ 0.32
CPSF1-213ENST00000620219 TRIM65Q6PJ69 517 aa17.03■□□□□ 0.32
CPSF1-213ENST00000620219 GPR142Q7Z601 462 aa17.03■□□□□ 0.32
CPSF1-213ENST00000620219 GTF3C2Q8WUA4 911 aaPredicted RBP17.03■□□□□ 0.32
CPSF1-213ENST00000620219 ZBTB45Q96K62 511 aaPredicted RBP17.03■□□□□ 0.32
CPSF1-213ENST00000620219 LACRTQ9GZZ8 138 aa17.03■□□□□ 0.32
CPSF1-213ENST00000620219 RRP9O43818 475 aaKnown RBP17.03■□□□□ 0.32
CPSF1-213ENST00000620219 VTNP04004 478 aa17.03■□□□□ 0.32
CPSF1-213ENST00000620219 CDR1P51861 262 aa17.03■□□□□ 0.32
CPSF1-213ENST00000620219 ANKRD63C9JTQ0 380 aa17.02■□□□□ 0.32
CPSF1-213ENST00000620219 FTCDO95954 541 aa17.02■□□□□ 0.32
CPSF1-213ENST00000620219 LAMC2Q13753 1193 aa17.02■□□□□ 0.32
CPSF1-213ENST00000620219 IQCEQ6IPM2 695 aa17.02■□□□□ 0.32
CPSF1-213ENST00000620219 CCDC170Q8IYT3 715 aa17.02■□□□□ 0.32
CPSF1-213ENST00000620219 GOLGA1Q92805 767 aa17.02■□□□□ 0.32
CPSF1-213ENST00000620219 KCTD10Q9H3F6 313 aa17.02■□□□□ 0.32
CPSF1-213ENST00000620219 PCDHB4Q9Y5E5 795 aa17.02■□□□□ 0.32
CPSF1-213ENST00000620219 ASTN1O14525 1302 aa17.02■□□□□ 0.32
CPSF1-213ENST00000620219 TNNC2P02585 160 aa17.02■□□□□ 0.32
CPSF1-213ENST00000620219 FERP16591 822 aa17.02■□□□□ 0.32
CPSF1-213ENST00000620219 KLRC1P26715 233 aa17.02■□□□□ 0.32
CPSF1-213ENST00000620219 MFAP3P55082 362 aa17.02■□□□□ 0.32
CPSF1-213ENST00000620219 EHHADHQ08426 723 aa17.02■□□□□ 0.32
CPSF1-213ENST00000620219 GDAP1L1Q96MZ0 367 aa17.02■□□□□ 0.32
CPSF1-213ENST00000620219 TRAF3IP3Q9Y228 551 aa17.02■□□□□ 0.32
CPSF1-213ENST00000620219 INSRRP14616 1297 aa17.02■□□□□ 0.31
CPSF1-213ENST00000620219 GLIPR1L2Q4G1C9 344 aa17.02■□□□□ 0.31
CPSF1-213ENST00000620219 SLFN12LQ6IEE8 588 aa17.02■□□□□ 0.31
CPSF1-213ENST00000620219 MTERF4Q7Z6M4 381 aaKnown RBP17.02■□□□□ 0.31
CPSF1-213ENST00000620219 GLYCTKQ8IVS8 523 aa17.02■□□□□ 0.31
CPSF1-213ENST00000620219 M0QZ92 97 aa17.02■□□□□ 0.31
CPSF1-213ENST00000620219 TGFB1I1O43294 461 aa17.02■□□□□ 0.31
CPSF1-213ENST00000620219 TIPINQ9BVW5 301 aa17.02■□□□□ 0.31
CPSF1-213ENST00000620219 MRPL4Q9BYD3 311 aaKnown RBP17.02■□□□□ 0.31
CPSF1-213ENST00000620219 SAR1BQ9Y6B6 198 aa17.02■□□□□ 0.31
CPSF1-213ENST00000620219 DLEC1Q9Y238 1755 aa17.01■□□□□ 0.31
CPSF1-213ENST00000620219 SLC16A3O15427 465 aaKnown RBP17.01■□□□□ 0.31
CPSF1-213ENST00000620219 MAPK4P31152 587 aa17.01■□□□□ 0.31
CPSF1-213ENST00000620219 KRT39Q6A163 491 aa17.01■□□□□ 0.31
CPSF1-213ENST00000620219 HBP1O60381 514 aa17.01■□□□□ 0.31
CPSF1-213ENST00000620219 FARP2O94887 1054 aaPredicted RBP17.01■□□□□ 0.31
CPSF1-213ENST00000620219 RGMBQ6NW40 437 aa17.01■□□□□ 0.31
CPSF1-213ENST00000620219 DAAM2Q86T65 1068 aa17.01■□□□□ 0.31
CPSF1-213ENST00000620219 PARP2Q9UGN5 583 aa17.01■□□□□ 0.31
CPSF1-213ENST00000620219 H3BRB1 525 aa17.01■□□□□ 0.31
CPSF1-213ENST00000620219 STRNO43815 780 aa17.01■□□□□ 0.31
CPSF1-213ENST00000620219 PDE6CP51160 858 aa17.01■□□□□ 0.31
CPSF1-213ENST00000620219 ABHD15Q6UXT9 468 aa17.01■□□□□ 0.31
CPSF1-213ENST00000620219 SENP7Q9BQF6 1050 aa17.01■□□□□ 0.31
CPSF1-213ENST00000620219 TUT1Q9H6E5 874 aaKnown RBP17.01■□□□□ 0.31
CPSF1-213ENST00000620219 PON1P27169 355 aa17■□□□□ 0.31
CPSF1-213ENST00000620219 PHKA2P46019 1235 aa17■□□□□ 0.31
CPSF1-213ENST00000620219 KCNJ6P48051 423 aa17■□□□□ 0.31
CPSF1-213ENST00000620219 VAV2P52735 878 aa17■□□□□ 0.31
CPSF1-213ENST00000620219 NLRP11P59045 1033 aaKnown RBP17■□□□□ 0.31
CPSF1-213ENST00000620219 WDR59Q6PJI9 974 aa17■□□□□ 0.31
CPSF1-213ENST00000620219 CEP112Q8N8E3 955 aa17■□□□□ 0.31
CPSF1-213ENST00000620219 BEGAINQ9BUH8 593 aa17■□□□□ 0.31
CPSF1-213ENST00000620219 MYO6Q9UM54 1294 aa17■□□□□ 0.31
CPSF1-213ENST00000620219 RPTORQ8N122 1335 aa17■□□□□ 0.31
CPSF1-213ENST00000620219 LTBP1Q14766 1721 aa17■□□□□ 0.31
CPSF1-213ENST00000620219 SPOPO43791 374 aa17■□□□□ 0.31
CPSF1-213ENST00000620219 GJA5P36382 358 aa17■□□□□ 0.31
CPSF1-213ENST00000620219 GNASQ5JWF2 1037 aa17■□□□□ 0.31
CPSF1-213ENST00000620219 REPS2Q8NFH8 660 aa17■□□□□ 0.31
CPSF1-213ENST00000620219 SLC35C1Q96A29 364 aa17■□□□□ 0.31
CPSF1-213ENST00000620219 ARHGAP20Q9P2F6 1191 aa17■□□□□ 0.31
CPSF1-213ENST00000620219 DDX41Q9UJV9 622 aaKnown RBP17■□□□□ 0.31
CPSF1-213ENST00000620219 DLG4P78352 724 aa17■□□□□ 0.31
CPSF1-213ENST00000620219 CELF3Q5SZQ8 465 aaKnown RBP17■□□□□ 0.31
CPSF1-213ENST00000620219 PEX26Q7Z412 305 aa17■□□□□ 0.31
CPSF1-213ENST00000620219 ADAT2Q7Z6V5 191 aaKnown RBP17■□□□□ 0.31
CPSF1-213ENST00000620219 ZNF710Q8N1W2 664 aa17■□□□□ 0.31
CPSF1-213ENST00000620219 BBXQ8WY36 941 aaPredicted RBP17■□□□□ 0.31
CPSF1-213ENST00000620219 RPF1Q9H9Y2 349 aaKnown RBP17■□□□□ 0.31
CPSF1-213ENST00000620219 SETD4Q9NVD3 440 aa17■□□□□ 0.31
CPSF1-213ENST00000620219 USTQ9Y2C2 406 aa17■□□□□ 0.31
CPSF1-213ENST00000620219 ZMYND10O75800 440 aa17■□□□□ 0.31
CPSF1-213ENST00000620219 RGS20O76081 388 aa17■□□□□ 0.31
CPSF1-213ENST00000620219 EXOC8Q8IYI6 725 aa17■□□□□ 0.31
CPSF1-213ENST00000620219 TRIM58Q8NG06 486 aa17■□□□□ 0.31
CPSF1-213ENST00000620219 ASAP3Q8TDY4 903 aa17■□□□□ 0.31
CPSF1-213ENST00000620219 LENG1Q96BZ8 264 aaPredicted RBP17■□□□□ 0.31
CPSF1-213ENST00000620219 ST7Q9NRC1 585 aa17■□□□□ 0.31
CPSF1-213ENST00000620219 KCNH4Q9UQ05 1017 aa17■□□□□ 0.31
CPSF1-213ENST00000620219 ATP2A1O14983 1001 aa16.99■□□□□ 0.31
CPSF1-213ENST00000620219 CEP104O60308 925 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms