RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 SCTRP47872 440 aa13.46□□□□□ -0.25
MSH6-213ENST00000614496 KRT17Q04695 432 aa13.46□□□□□ -0.25
MSH6-213ENST00000614496 KCNV2Q8TDN2 545 aa13.46□□□□□ -0.25
MSH6-213ENST00000614496 CARD9Q9H257 536 aa13.46□□□□□ -0.25
MSH6-213ENST00000614496 PABPC3Q9H361 631 aaKnown RBP13.46□□□□□ -0.25
MSH6-213ENST00000614496 MAPK7Q13164 816 aa13.46□□□□□ -0.25
MSH6-213ENST00000614496 DMP1Q13316 513 aaPredicted RBP13.46□□□□□ -0.25
MSH6-213ENST00000614496 KYNUQ16719 465 aa13.46□□□□□ -0.25
MSH6-213ENST00000614496 QPCTQ16769 361 aa13.46□□□□□ -0.25
MSH6-213ENST00000614496 GRK7Q8WTQ7 553 aa13.46□□□□□ -0.25
MSH6-213ENST00000614496 RNF25Q96BH1 459 aaPredicted RBP13.46□□□□□ -0.25
MSH6-213ENST00000614496 C9orf72Q96LT7 481 aa13.46□□□□□ -0.25
MSH6-213ENST00000614496 TRAF3IP3Q9Y228 551 aa13.46□□□□□ -0.25
MSH6-213ENST00000614496 DDTLA6NHG4 134 aaPredicted RBP13.46□□□□□ -0.26
MSH6-213ENST00000614496 CCT8L1PA6NM43 557 aa13.46□□□□□ -0.26
MSH6-213ENST00000614496 TNFRSF8P28908 595 aa13.46□□□□□ -0.26
MSH6-213ENST00000614496 ASTE1Q2TB18 679 aaPredicted RBP13.46□□□□□ -0.26
MSH6-213ENST00000614496 CEP55Q53EZ4 464 aa13.46□□□□□ -0.26
MSH6-213ENST00000614496 IWS1Q96ST2 819 aa13.46□□□□□ -0.26
MSH6-213ENST00000614496 ACP6Q9NPH0 428 aa13.46□□□□□ -0.26
MSH6-213ENST00000614496 KMT5AQ9NQR1 393 aa13.46□□□□□ -0.26
MSH6-213ENST00000614496 CD19P15391 556 aa13.45□□□□□ -0.26
MSH6-213ENST00000614496 CBWD6Q4V339 395 aa13.45□□□□□ -0.26
MSH6-213ENST00000614496 CBWD3Q5JTY5 395 aa13.45□□□□□ -0.26
MSH6-213ENST00000614496 CBWD5Q5RIA9 395 aa13.45□□□□□ -0.26
MSH6-213ENST00000614496 NLRX1Q86UT6 975 aa13.45□□□□□ -0.26
MSH6-213ENST00000614496 MAIP1Q8WWC4 291 aa13.45□□□□□ -0.26
MSH6-213ENST00000614496 SGSM3Q96HU1 749 aa13.45□□□□□ -0.26
MSH6-213ENST00000614496 TISP43B9A030 160 aa13.45□□□□□ -0.26
MSH6-213ENST00000614496 H0YIN7 160 aa13.45□□□□□ -0.26
MSH6-213ENST00000614496 LIG4P49917 911 aa13.45□□□□□ -0.26
MSH6-213ENST00000614496 DYNLT1P63172 113 aa13.45□□□□□ -0.26
MSH6-213ENST00000614496 MXRA7P84157 204 aa13.45□□□□□ -0.26
MSH6-213ENST00000614496 ZRSR2Q15696 482 aaKnown RBP13.45□□□□□ -0.26
MSH6-213ENST00000614496 ATG4AQ8WYN0 398 aa13.45□□□□□ -0.26
MSH6-213ENST00000614496 KRT35Q92764 455 aa13.45□□□□□ -0.26
MSH6-213ENST00000614496 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.45□□□□□ -0.26
MSH6-213ENST00000614496 SPAG7O75391 227 aa13.45□□□□□ -0.26
MSH6-213ENST00000614496 ZCWPW2Q504Y3 356 aa13.45□□□□□ -0.26
MSH6-213ENST00000614496 COBLL1Q53SF7 1204 aa13.45□□□□□ -0.26
MSH6-213ENST00000614496 CC2D2BQ6DHV5 1058 aa13.45□□□□□ -0.26
MSH6-213ENST00000614496 HAUS6Q7Z4H7 955 aa13.45□□□□□ -0.26
MSH6-213ENST00000614496 SCFD2Q8WU76 684 aa13.45□□□□□ -0.26
MSH6-213ENST00000614496 C11orf70Q9BRQ4 267 aa13.45□□□□□ -0.26
MSH6-213ENST00000614496 ECT2Q9H8V3 914 aa13.45□□□□□ -0.26
MSH6-213ENST00000614496 KLHL11Q9NVR0 708 aa13.45□□□□□ -0.26
MSH6-213ENST00000614496 ANKFY1Q9P2R3 1169 aa13.45□□□□□ -0.26
MSH6-213ENST00000614496 PARP4Q9UKK3 1724 aaKnown RBP13.45□□□□□ -0.26
MSH6-213ENST00000614496 NR2E1Q9Y466 385 aa13.45□□□□□ -0.26
MSH6-213ENST00000614496 PCDHB4Q9Y5E5 795 aa13.45□□□□□ -0.26
MSH6-213ENST00000614496 PCDHAC2Q9Y5I4 1007 aa13.45□□□□□ -0.26
MSH6-213ENST00000614496 DISP2A7MBM2 1401 aa13.44□□□□□ -0.26
MSH6-213ENST00000614496 EXOC1LA0A1B0GW35 172 aa13.44□□□□□ -0.26
MSH6-213ENST00000614496 TBX3O15119 743 aa13.44□□□□□ -0.26
MSH6-213ENST00000614496 RAD17O75943 681 aa13.44□□□□□ -0.26
MSH6-213ENST00000614496 SGPL1O95470 568 aa13.44□□□□□ -0.26
MSH6-213ENST00000614496 IL9RQ01113 521 aa13.44□□□□□ -0.26
MSH6-213ENST00000614496 STRN3Q13033 797 aa13.44□□□□□ -0.26
MSH6-213ENST00000614496 LNX1Q8TBB1 728 aaPredicted RBP13.44□□□□□ -0.26
MSH6-213ENST00000614496 CEP170P1Q96L14 293 aa13.44□□□□□ -0.26
MSH6-213ENST00000614496 PITPNM3Q9BZ71 974 aa13.44□□□□□ -0.26
MSH6-213ENST00000614496 PPP1R12CQ9BZL4 782 aa13.44□□□□□ -0.26
MSH6-213ENST00000614496 RASA4BC9J798 803 aa13.44□□□□□ -0.26
MSH6-213ENST00000614496 RASA4O43374 803 aa13.44□□□□□ -0.26
MSH6-213ENST00000614496 TRAPPC3O43617 180 aa13.44□□□□□ -0.26
MSH6-213ENST00000614496 MREGQ8N565 214 aa13.44□□□□□ -0.26
MSH6-213ENST00000614496 LBHD1Q9BQE6 289 aaPredicted RBP13.44□□□□□ -0.26
MSH6-213ENST00000614496 CBWD1Q9BRT8 395 aa13.44□□□□□ -0.26
MSH6-213ENST00000614496 NYAP2Q9P242 653 aa13.44□□□□□ -0.26
MSH6-213ENST00000614496 SEL1LQ9UBV2 794 aa13.44□□□□□ -0.26
MSH6-213ENST00000614496 SCAF8Q9UPN6 1271 aaKnown RBP13.44□□□□□ -0.26
MSH6-213ENST00000614496 SIPA1L3O60292 1781 aaPredicted RBP13.44□□□□□ -0.26
MSH6-213ENST00000614496 TMEM120BA0PK00 339 aa13.44□□□□□ -0.26
MSH6-213ENST00000614496 H0Y3Z8 333 aa13.44□□□□□ -0.26
MSH6-213ENST00000614496 RBAK-RBAKDNI3L0D1 243 aa13.44□□□□□ -0.26
MSH6-213ENST00000614496 RTN2O75298 545 aa13.44□□□□□ -0.26
MSH6-213ENST00000614496 TM4SF1P30408 202 aa13.44□□□□□ -0.26
MSH6-213ENST00000614496 ECE1P42892 770 aa13.44□□□□□ -0.26
MSH6-213ENST00000614496 MARCKSL1P49006 195 aa13.44□□□□□ -0.26
MSH6-213ENST00000614496 DRP2Q13474 957 aa13.44□□□□□ -0.26
MSH6-213ENST00000614496 MTM1Q13496 603 aa13.44□□□□□ -0.26
MSH6-213ENST00000614496 WDR78Q5VTH9 848 aa13.44□□□□□ -0.26
MSH6-213ENST00000614496 ARHGEF18Q6ZSZ5 1173 aa13.44□□□□□ -0.26
MSH6-213ENST00000614496 PAXIP1Q6ZW49 1069 aaPredicted RBP13.44□□□□□ -0.26
MSH6-213ENST00000614496 TGS1Q96RS0 853 aaKnown RBP13.44□□□□□ -0.26
MSH6-213ENST00000614496 SAYSD1Q9NPB0 183 aa13.44□□□□□ -0.26
MSH6-213ENST00000614496 GOLGA8SH3BPF8 625 aa13.43□□□□□ -0.26
MSH6-213ENST00000614496 GOLGA8MH3BSY2 632 aa13.43□□□□□ -0.26
MSH6-213ENST00000614496 AGTP01019 485 aa13.43□□□□□ -0.26
MSH6-213ENST00000614496 IL1R1P14778 569 aa13.43□□□□□ -0.26
MSH6-213ENST00000614496 PDE6BP35913 854 aa13.43□□□□□ -0.26
MSH6-213ENST00000614496 PIK3CAP42336 1068 aa13.43□□□□□ -0.26
MSH6-213ENST00000614496 ARHGEF16Q5VV41 709 aa13.43□□□□□ -0.26
MSH6-213ENST00000614496 TRPM8Q7Z2W7 1104 aa13.43□□□□□ -0.26
MSH6-213ENST00000614496 SUGP1Q8IWZ8 645 aaKnown RBP13.43□□□□□ -0.26
MSH6-213ENST00000614496 PPP1R14CQ8TAE6 165 aa13.43□□□□□ -0.26
MSH6-213ENST00000614496 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.43□□□□□ -0.26
MSH6-213ENST00000614496 LRRC8CQ8TDW0 803 aa13.43□□□□□ -0.26
MSH6-213ENST00000614496 PI4K2AQ9BTU6 479 aa13.43□□□□□ -0.26
MSH6-213ENST00000614496 WNT8AQ9H1J5 351 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms