RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	SLC44A4	Q53GD3	710 aa		13.31	□□□□□ -0.28
CLK3-222	ENST00000568232	TWF2	Q6IBS0	349 aa	Known RBP	13.31	□□□□□ -0.28
CLK3-222	ENST00000568232	CYP26C1	Q6V0L0	522 aa		13.31	□□□□□ -0.28
CLK3-222	ENST00000568232	PALB2	Q86YC2	1186 aa		13.31	□□□□□ -0.28
CLK3-222	ENST00000568232	PLEKHM2	Q8IWE5	1019 aa		13.31	□□□□□ -0.28
CLK3-222	ENST00000568232	NCOA7	Q8NI08	942 aa		13.31	□□□□□ -0.28
CLK3-222	ENST00000568232	RPS6KC1	Q96S38	1066 aa		13.31	□□□□□ -0.28
CLK3-222	ENST00000568232	LZTS2	Q9BRK4	669 aa		13.31	□□□□□ -0.28
CLK3-222	ENST00000568232	ANO3	Q9BYT9	981 aa		13.31	□□□□□ -0.28
CLK3-222	ENST00000568232	RHOBTB2	Q9BYZ6	727 aa		13.31	□□□□□ -0.28
CLK3-222	ENST00000568232	NT5C3A	Q9H0P0	336 aa		13.31	□□□□□ -0.28
CLK3-222	ENST00000568232	GABBR1	Q9UBS5	961 aa		13.31	□□□□□ -0.28
CLK3-222	ENST00000568232	GMEB2	Q9UKD1	530 aa		13.31	□□□□□ -0.28
CLK3-222	ENST00000568232	CARNS1	A5YM72	827 aa		13.3	□□□□□ -0.28
CLK3-222	ENST00000568232	HIP1	O00291	1037 aa		13.3	□□□□□ -0.28
CLK3-222	ENST00000568232	IPO5	O00410	1097 aa	Known RBP	13.3	□□□□□ -0.28
CLK3-222	ENST00000568232	NRP1	O14786	923 aa		13.3	□□□□□ -0.28
CLK3-222	ENST00000568232	TBC1D4	O60343	1298 aa		13.3	□□□□□ -0.28
CLK3-222	ENST00000568232	SOD2	P04179	222 aa		13.3	□□□□□ -0.28
CLK3-222	ENST00000568232	ALDH2	P05091	517 aa		13.3	□□□□□ -0.28
CLK3-222	ENST00000568232	UROD	P06132	367 aa		13.3	□□□□□ -0.28
CLK3-222	ENST00000568232	ADH1A	P07327	375 aa		13.3	□□□□□ -0.28
CLK3-222	ENST00000568232	ZNF76	P36508	570 aa		13.3	□□□□□ -0.28
CLK3-222	ENST00000568232	PTH1R	Q03431	593 aa		13.3	□□□□□ -0.28
CLK3-222	ENST00000568232	DRP2	Q13474	957 aa		13.3	□□□□□ -0.28
CLK3-222	ENST00000568232	MLF2	Q15773	248 aa	Predicted RBP	13.3	□□□□□ -0.28
CLK3-222	ENST00000568232	B4GALNT3	Q6L9W6	998 aa		13.3	□□□□□ -0.28
CLK3-222	ENST00000568232	TYW1B	Q6NUM6	668 aa		13.3	□□□□□ -0.28
CLK3-222	ENST00000568232	PLA2G4D	Q86XP0	818 aa		13.3	□□□□□ -0.28
CLK3-222	ENST00000568232	NETO1	Q8TDF5	533 aa		13.3	□□□□□ -0.28
CLK3-222	ENST00000568232	TRAIP	Q9BWF2	469 aa		13.3	□□□□□ -0.28
CLK3-222	ENST00000568232	LTB4R2	Q9NPC1	389 aa		13.3	□□□□□ -0.28
CLK3-222	ENST00000568232	CHST12	Q9NRB3	414 aa		13.3	□□□□□ -0.28
CLK3-222	ENST00000568232	SH2B1	Q9NRF2	756 aa	Predicted RBP	13.3	□□□□□ -0.28
CLK3-222	ENST00000568232	FAM105A	Q9NUU6	356 aa		13.3	□□□□□ -0.28
CLK3-222	ENST00000568232	CEP131	Q9UPN4	1083 aa		13.3	□□□□□ -0.28
CLK3-222	ENST00000568232	PIN4	Q9Y237	131 aa	Known RBP	13.3	□□□□□ -0.28
CLK3-222	ENST00000568232	FAN1	Q9Y2M0	1017 aa		13.3	□□□□□ -0.28
CLK3-222	ENST00000568232	GAS2	O43903	313 aa	Known RBP	13.29	□□□□□ -0.28
CLK3-222	ENST00000568232	GDF9	O60383	454 aa		13.29	□□□□□ -0.28
CLK3-222	ENST00000568232	POMC	P01189	267 aa		13.29	□□□□□ -0.28
CLK3-222	ENST00000568232	GNAQ	P50148	359 aa		13.29	□□□□□ -0.28
CLK3-222	ENST00000568232	WWC2	Q6AWC2	1192 aa		13.29	□□□□□ -0.28
CLK3-222	ENST00000568232	AGMO	Q6ZNB7	445 aa		13.29	□□□□□ -0.28
CLK3-222	ENST00000568232	GLYCTK	Q8IVS8	523 aa		13.29	□□□□□ -0.28
CLK3-222	ENST00000568232	MB21D2	Q8IYB1	491 aa	Predicted RBP	13.29	□□□□□ -0.28
CLK3-222	ENST00000568232	PHKB	Q93100	1093 aa		13.29	□□□□□ -0.28
CLK3-222	ENST00000568232	MARCH5	Q9NX47	278 aa		13.29	□□□□□ -0.28
CLK3-222	ENST00000568232	DPP7	Q9UHL4	492 aa		13.29	□□□□□ -0.28
CLK3-222	ENST00000568232	ANGPTL2	Q9UKU9	493 aa		13.29	□□□□□ -0.28
CLK3-222	ENST00000568232	PRG3	Q9Y2Y8	225 aa	Predicted RBP	13.29	□□□□□ -0.28
CLK3-222	ENST00000568232	PATJ	Q8NI35	1801 aa		13.29	□□□□□ -0.28
CLK3-222	ENST00000568232	IGLV3-22	A0A075B6J6	115 aa		13.28	□□□□□ -0.28
CLK3-222	ENST00000568232		A0A087WZ62	844 aa		13.28	□□□□□ -0.28
CLK3-222	ENST00000568232		F8W810	466 aa		13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	TGM5	O43548	720 aa		13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	ZNF862	O60290	1169 aa		13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	ZNF623	O75123	536 aa		13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	PSAP	P07602	524 aa		13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	FSHR	P23945	695 aa		13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	TARS	P26639	723 aa	Known RBP	13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	SREBF1	P36956	1147 aa		13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	NTHL1	P78549	312 aa		13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	PRKCQ	Q04759	706 aa		13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	DMWD	Q09019	674 aa		13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	ZBTB41	Q5SVQ8	909 aa		13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	ELMSAN1	Q6PJG2	1045 aa		13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	NIPA1	Q7RTP0	329 aa		13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	ZNF710	Q8N1W2	664 aa		13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	URGCP	Q8TCY9	931 aa		13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	RSPH1	Q8WYR4	309 aa		13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	B3GALT6	Q96L58	329 aa		13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	FAM193B	Q96PV7	902 aa	Predicted RBP	13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	FDXACB1	Q9BRP7	624 aa	Predicted RBP	13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	ZNF577	Q9BSK1	485 aa		13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	HERC2P3	Q9BVR0	1158 aa		13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	GCOM2	Q9BZD3	368 aa	Predicted RBP	13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	OSBPL6	Q9BZF3	934 aa		13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	PRKD2	Q9BZL6	878 aa		13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	RXFP1	Q9HBX9	757 aa		13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	RIC8A	Q9NPQ8	531 aa		13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	STK39	Q9UEW8	545 aa		13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	PCDHA10	Q9Y5I2	948 aa		13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	DOCK8	Q8NF50	2099 aa		13.28	□□□□□ -0.28
CLK3-222	ENST00000568232	PAPLN	O95428	1278 aa		13.27	□□□□□ -0.29
CLK3-222	ENST00000568232	FOS	P01100	380 aa	Predicted RBP	13.27	□□□□□ -0.29
CLK3-222	ENST00000568232	SKI	P12755	728 aa		13.27	□□□□□ -0.29
CLK3-222	ENST00000568232	GLUD2	P49448	558 aa		13.27	□□□□□ -0.29
CLK3-222	ENST00000568232	NAPA	P54920	295 aa		13.27	□□□□□ -0.29
CLK3-222	ENST00000568232	MTAP	Q13126	283 aa		13.27	□□□□□ -0.29
CLK3-222	ENST00000568232	PDAP1	Q13442	181 aa	Known RBP	13.27	□□□□□ -0.29
CLK3-222	ENST00000568232	FZD5	Q13467	585 aa		13.27	□□□□□ -0.29
CLK3-222	ENST00000568232	ACAP1	Q15027	740 aa		13.27	□□□□□ -0.29
CLK3-222	ENST00000568232	N4BP2L1	Q5TBK1	243 aa	Predicted RBP	13.27	□□□□□ -0.29
CLK3-222	ENST00000568232	ZNF746	Q6NUN9	644 aa	Predicted RBP	13.27	□□□□□ -0.29
CLK3-222	ENST00000568232	NFXL1	Q6ZNB6	911 aa		13.27	□□□□□ -0.29
CLK3-222	ENST00000568232	GRASP	Q7Z6J2	395 aa	Predicted RBP	13.27	□□□□□ -0.29
CLK3-222	ENST00000568232	CLDN23	Q96B33	292 aa		13.27	□□□□□ -0.29
CLK3-222	ENST00000568232	TMEM175	Q9BSA9	504 aa		13.27	□□□□□ -0.29
CLK3-222	ENST00000568232	OSBPL3	Q9H4L5	887 aa		13.27	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms