RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 NCLP19338 710 aaKnown RBP4.54□□□□□ -1.68
VPS35-203ENST00000562420 IBSPP21815 317 aaPredicted RBP4.54□□□□□ -1.68
VPS35-203ENST00000562420 COMTP21964 271 aa4.54□□□□□ -1.68
VPS35-203ENST00000562420 GPR3P46089 330 aa4.54□□□□□ -1.68
VPS35-203ENST00000562420 MTNR1BP49286 362 aa4.54□□□□□ -1.68
VPS35-203ENST00000562420 SLC5A3P53794 718 aa4.54□□□□□ -1.68
VPS35-203ENST00000562420 LGALS4P56470 323 aa4.54□□□□□ -1.68
VPS35-203ENST00000562420 ATP2C1P98194 919 aaPredicted RBP4.54□□□□□ -1.68
VPS35-203ENST00000562420 CD69Q07108 199 aa4.54□□□□□ -1.68
VPS35-203ENST00000562420 SAFB2Q14151 953 aaKnown RBP eCLIP4.54□□□□□ -1.68
VPS35-203ENST00000562420 MUM1Q2TAK8 710 aa4.54□□□□□ -1.68
VPS35-203ENST00000562420 CT83Q5H943 113 aa4.54□□□□□ -1.68
VPS35-203ENST00000562420 MAMDC4Q6UXC1 1216 aa4.54□□□□□ -1.68
VPS35-203ENST00000562420 CMTM4Q8IZR5 234 aa4.54□□□□□ -1.68
VPS35-203ENST00000562420 CNTD1Q8N815 330 aa4.54□□□□□ -1.68
VPS35-203ENST00000562420 ANKRD53Q8N9V6 530 aa4.54□□□□□ -1.68
VPS35-203ENST00000562420 PRPF38AQ8NAV1 312 aaKnown RBP4.54□□□□□ -1.68
VPS35-203ENST00000562420 EAF2Q96CJ1 260 aaPredicted RBP4.54□□□□□ -1.68
VPS35-203ENST00000562420 FAM89AQ96GI7 184 aa4.54□□□□□ -1.68
VPS35-203ENST00000562420 BORCS6Q96GS4 357 aa4.54□□□□□ -1.68
VPS35-203ENST00000562420 GNRHR2Q96P88 292 aa4.54□□□□□ -1.68
VPS35-203ENST00000562420 ENKD1Q9H0I2 346 aa4.54□□□□□ -1.68
VPS35-203ENST00000562420 C12orf65Q9H3J6 166 aaKnown RBP4.54□□□□□ -1.68
VPS35-203ENST00000562420 VTA1Q9NP79 307 aa4.54□□□□□ -1.68
VPS35-203ENST00000562420 IL23AQ9NPF7 189 aa4.54□□□□□ -1.68
VPS35-203ENST00000562420 ZNF277Q9NRM2 450 aaPredicted RBP4.54□□□□□ -1.68
VPS35-203ENST00000562420 CCM2LQ9NUG4 571 aaPredicted RBP4.54□□□□□ -1.68
VPS35-203ENST00000562420 TYW1Q9NV66 732 aaKnown RBP4.54□□□□□ -1.68
VPS35-203ENST00000562420 NOP58Q9Y2X3 529 aaKnown RBP4.54□□□□□ -1.68
VPS35-203ENST00000562420 TSC22D4Q9Y3Q8 395 aa4.54□□□□□ -1.68
VPS35-203ENST00000562420 PHF2O75151 1096 aa4.53□□□□□ -1.68
VPS35-203ENST00000562420 TMEM127O75204 238 aa4.53□□□□□ -1.68
VPS35-203ENST00000562420 ALDH1A2O94788 518 aa4.53□□□□□ -1.68
VPS35-203ENST00000562420 ZNF20P17024 532 aa4.53□□□□□ -1.68
VPS35-203ENST00000562420 CDKN1CP49918 316 aaPredicted RBP4.53□□□□□ -1.68
VPS35-203ENST00000562420 MGAT5Q09328 741 aa4.53□□□□□ -1.68
VPS35-203ENST00000562420 GRM7Q14831 915 aa4.53□□□□□ -1.68
VPS35-203ENST00000562420 R3HDM1Q15032 1099 aaKnown RBP4.53□□□□□ -1.68
VPS35-203ENST00000562420 SYDE2Q5VT97 1194 aa4.53□□□□□ -1.68
VPS35-203ENST00000562420 KRT40Q6A162 431 aa4.53□□□□□ -1.68
VPS35-203ENST00000562420 MFSD5Q6N075 450 aa4.53□□□□□ -1.68
VPS35-203ENST00000562420 BTNL9Q6UXG8 535 aa4.53□□□□□ -1.68
VPS35-203ENST00000562420 CHST13Q8NET6 341 aa4.53□□□□□ -1.68
VPS35-203ENST00000562420 COG1Q8WTW3 980 aa4.53□□□□□ -1.68
VPS35-203ENST00000562420 FATE1Q969F0 183 aa4.53□□□□□ -1.68
VPS35-203ENST00000562420 WWC2-AS2Q96NR7 200 aa4.53□□□□□ -1.68
VPS35-203ENST00000562420 OR14A2Q96R54 314 aa4.53□□□□□ -1.68
VPS35-203ENST00000562420 TMPRSS5Q9H3S3 457 aa4.53□□□□□ -1.68
VPS35-203ENST00000562420 PRDM12Q9H4Q4 367 aa4.53□□□□□ -1.68
VPS35-203ENST00000562420 AGO3Q9H9G7 860 aaKnown RBP4.53□□□□□ -1.68
VPS35-203ENST00000562420 PLA2G3Q9NZ20 509 aa4.53□□□□□ -1.68
VPS35-203ENST00000562420 SCOCQ9UIL1 159 aa4.53□□□□□ -1.68
VPS35-203ENST00000562420 SPEF1Q9Y4P9 236 aa4.53□□□□□ -1.68
VPS35-203ENST00000562420 CYP27B1O15528 508 aa4.52□□□□□ -1.69
VPS35-203ENST00000562420 CFBP00751 764 aa4.52□□□□□ -1.69
VPS35-203ENST00000562420 GASTP01350 101 aa4.52□□□□□ -1.69
VPS35-203ENST00000562420 LPLP06858 475 aa4.52□□□□□ -1.69
VPS35-203ENST00000562420 GYPEP15421 78 aa4.52□□□□□ -1.69
VPS35-203ENST00000562420 GUCY2FP51841 1108 aa4.52□□□□□ -1.69
VPS35-203ENST00000562420 SCAND1P57086 179 aa4.52□□□□□ -1.69
VPS35-203ENST00000562420 FOXL1Q12952 345 aa4.52□□□□□ -1.69
VPS35-203ENST00000562420 METTL24Q5JXM2 366 aa4.52□□□□□ -1.69
VPS35-203ENST00000562420 MBNL2Q5VZF2 373 aaKnown RBP4.52□□□□□ -1.69
VPS35-203ENST00000562420 FAM180AQ6UWF9 173 aa4.52□□□□□ -1.69
VPS35-203ENST00000562420 ANKRD35Q8N283 1001 aa4.52□□□□□ -1.69
VPS35-203ENST00000562420 CBARPQ8N350 705 aaPredicted RBP4.52□□□□□ -1.69
VPS35-203ENST00000562420 TSPEARQ8WU66 669 aa4.52□□□□□ -1.69
VPS35-203ENST00000562420 SNX33Q8WV41 574 aa4.52□□□□□ -1.69
VPS35-203ENST00000562420 C8orf49Q96NF6 230 aa4.52□□□□□ -1.69
VPS35-203ENST00000562420 TCF25Q9BQ70 676 aa4.52□□□□□ -1.69
VPS35-203ENST00000562420 PDCD2LQ9BRP1 358 aa4.52□□□□□ -1.69
VPS35-203ENST00000562420 KLC2Q9H0B6 622 aa4.52□□□□□ -1.69
VPS35-203ENST00000562420 IFT122Q9HBG6 1241 aa4.52□□□□□ -1.69
VPS35-203ENST00000562420 AURKAIP1Q9NWT8 199 aaPredicted RBP4.52□□□□□ -1.69
VPS35-203ENST00000562420 DPP7Q9UHL4 492 aa4.52□□□□□ -1.69
VPS35-203ENST00000562420 RPTORQ8N122 1335 aa4.51□□□□□ -1.69
VPS35-203ENST00000562420 MUSKO15146 869 aa4.51□□□□□ -1.69
VPS35-203ENST00000562420 RBP3P10745 1247 aa4.51□□□□□ -1.69
VPS35-203ENST00000562420 AGXTP21549 392 aa4.51□□□□□ -1.69
VPS35-203ENST00000562420 CTSSP25774 331 aa4.51□□□□□ -1.69
VPS35-203ENST00000562420 CRHR1P34998 444 aa4.51□□□□□ -1.69
VPS35-203ENST00000562420 NPEPPSP55786 919 aa4.51□□□□□ -1.69
VPS35-203ENST00000562420 HHEXQ03014 270 aa4.51□□□□□ -1.69
VPS35-203ENST00000562420 MALLQ13021 153 aa4.51□□□□□ -1.69
VPS35-203ENST00000562420 MTMR1Q13613 665 aa4.51□□□□□ -1.69
VPS35-203ENST00000562420 ADRM1Q16186 407 aa4.51□□□□□ -1.69
VPS35-203ENST00000562420 MST1LQ2TV78 715 aa4.51□□□□□ -1.69
VPS35-203ENST00000562420 FAM111BQ6SJ93 734 aa4.51□□□□□ -1.69
VPS35-203ENST00000562420 Q6ZSN1 163 aa4.51□□□□□ -1.69
VPS35-203ENST00000562420 HTR3DQ70Z44 454 aa4.51□□□□□ -1.69
VPS35-203ENST00000562420 APBB1IPQ7Z5R6 666 aaPredicted RBP4.51□□□□□ -1.69
VPS35-203ENST00000562420 GLB1L3Q8NCI6 653 aaPredicted RBP4.51□□□□□ -1.69
VPS35-203ENST00000562420 ZNF480Q8WV37 535 aa4.51□□□□□ -1.69
VPS35-203ENST00000562420 GPATCH3Q96I76 525 aa4.51□□□□□ -1.69
VPS35-203ENST00000562420 RPL10LQ96L21 214 aaKnown RBP4.51□□□□□ -1.69
VPS35-203ENST00000562420 TRIM8Q9BZR9 551 aa4.51□□□□□ -1.69
VPS35-203ENST00000562420 SLC13A1Q9BZW2 595 aa4.51□□□□□ -1.69
VPS35-203ENST00000562420 DEF6Q9H4E7 631 aa4.51□□□□□ -1.69
VPS35-203ENST00000562420 GREM2Q9H772 168 aa4.51□□□□□ -1.69
VPS35-203ENST00000562420 ST6GALNAC2Q9UJ37 374 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms