RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 CBWD2Q8IUF1 395 aa23.21■■□□□ 1.31
CLN3-209ENST00000561689 KAT2BQ92831 832 aa23.21■■□□□ 1.31
CLN3-209ENST00000561689 KCNN1Q92952 543 aa23.21■■□□□ 1.31
CLN3-209ENST00000561689 TMEM134Q9H6X4 195 aa23.21■■□□□ 1.31
CLN3-209ENST00000561689 COL1A2P08123 1366 aa23.21■■□□□ 1.31
CLN3-209ENST00000561689 MAGEB2O15479 319 aa23.21■■□□□ 1.31
CLN3-209ENST00000561689 CYBAP13498 195 aa23.21■■□□□ 1.31
CLN3-209ENST00000561689 KRT13P13646 458 aa23.21■■□□□ 1.31
CLN3-209ENST00000561689 MAP2K2P36507 400 aa23.21■■□□□ 1.31
CLN3-209ENST00000561689 CPT1AP50416 773 aa23.21■■□□□ 1.31
CLN3-209ENST00000561689 DLG4P78352 724 aa23.21■■□□□ 1.31
CLN3-209ENST00000561689 MTHFD1LQ6UB35 978 aa23.21■■□□□ 1.31
CLN3-209ENST00000561689 NEK11Q8NG66 645 aa23.21■■□□□ 1.31
CLN3-209ENST00000561689 OR8K1Q8NGG5 319 aa23.21■■□□□ 1.31
CLN3-209ENST00000561689 TARS2Q9BW92 718 aaKnown RBP23.21■■□□□ 1.31
CLN3-209ENST00000561689 Q9Y3F1 56 aa23.21■■□□□ 1.31
CLN3-209ENST00000561689 PHLPP2Q6ZVD8 1323 aa23.2■■□□□ 1.3
CLN3-209ENST00000561689 ARHGAP6O43182 974 aa23.2■■□□□ 1.3
CLN3-209ENST00000561689 F2P00734 622 aa23.2■■□□□ 1.3
CLN3-209ENST00000561689 EFNA5P52803 228 aa23.2■■□□□ 1.3
CLN3-209ENST00000561689 ZBED6P86452 979 aa23.2■■□□□ 1.3
CLN3-209ENST00000561689 SNRNP35Q16560 246 aaKnown RBP23.2■■□□□ 1.3
CLN3-209ENST00000561689 KIAA0753Q2KHM9 967 aa23.2■■□□□ 1.3
CLN3-209ENST00000561689 MARCH8Q5T0T0 291 aa23.2■■□□□ 1.3
CLN3-209ENST00000561689 CDCA2Q69YH5 1023 aaPredicted RBP23.2■■□□□ 1.3
CLN3-209ENST00000561689 INTS8Q75QN2 995 aaKnown RBP23.2■■□□□ 1.3
CLN3-209ENST00000561689 SETD4Q9NVD3 440 aa23.2■■□□□ 1.3
CLN3-209ENST00000561689 MGAMO43451 1857 aa23.2■■□□□ 1.3
CLN3-209ENST00000561689 A0A1W2PQJ5 194 aa23.2■■□□□ 1.3
CLN3-209ENST00000561689 SOWAHDA6NJG2 315 aa23.2■■□□□ 1.3
CLN3-209ENST00000561689 USP27XA6NNY8 438 aa23.2■■□□□ 1.3
CLN3-209ENST00000561689 ADRB2P07550 413 aa23.2■■□□□ 1.3
CLN3-209ENST00000561689 MYL3P08590 195 aa23.2■■□□□ 1.3
CLN3-209ENST00000561689 VAMP7P51809 220 aa23.2■■□□□ 1.3
CLN3-209ENST00000561689 E4F1Q66K89 784 aaPredicted RBP23.2■■□□□ 1.3
CLN3-209ENST00000561689 ZBTB8OSQ8IWT0 167 aa23.2■■□□□ 1.3
CLN3-209ENST00000561689 CD99L2Q8TCZ2 262 aa23.2■■□□□ 1.3
CLN3-209ENST00000561689 ZBTB45Q96K62 511 aaPredicted RBP23.2■■□□□ 1.3
CLN3-209ENST00000561689 DNAJC7Q99615 494 aa23.2■■□□□ 1.3
CLN3-209ENST00000561689 CFHR5Q9BXR6 569 aa23.2■■□□□ 1.3
CLN3-209ENST00000561689 SPTLC3Q9NUV7 552 aa23.2■■□□□ 1.3
CLN3-209ENST00000561689 TRMT1Q9NXH9 659 aaKnown RBP23.2■■□□□ 1.3
CLN3-209ENST00000561689 TTLL13PA6NNM8 815 aa23.19■■□□□ 1.3
CLN3-209ENST00000561689 NOL4O94818 638 aa23.19■■□□□ 1.3
CLN3-209ENST00000561689 SLC9A1P19634 815 aa23.19■■□□□ 1.3
CLN3-209ENST00000561689 GARTP22102 1010 aa23.19■■□□□ 1.3
CLN3-209ENST00000561689 TFDP1Q14186 410 aa23.19■■□□□ 1.3
CLN3-209ENST00000561689 MTF1Q14872 753 aa23.19■■□□□ 1.3
CLN3-209ENST00000561689 FSCN1Q16658 493 aaKnown RBP23.19■■□□□ 1.3
CLN3-209ENST00000561689 LINC01465Q8N7H1 131 aa23.19■■□□□ 1.3
CLN3-209ENST00000561689 ZNF397Q8NF99 534 aaPredicted RBP23.19■■□□□ 1.3
CLN3-209ENST00000561689 PLEKHO2Q8TD55 490 aa23.19■■□□□ 1.3
CLN3-209ENST00000561689 PPP1R16BQ96T49 567 aa23.19■■□□□ 1.3
CLN3-209ENST00000561689 CCDC113Q9H0I3 377 aa23.19■■□□□ 1.3
CLN3-209ENST00000561689 PIGRP01833 764 aa23.18■■□□□ 1.3
CLN3-209ENST00000561689 ACTN1P12814 892 aa23.18■■□□□ 1.3
CLN3-209ENST00000561689 ELNP15502 786 aa23.18■■□□□ 1.3
CLN3-209ENST00000561689 FMO5P49326 533 aa23.18■■□□□ 1.3
CLN3-209ENST00000561689 EXOC3L4Q17RC7 722 aa23.18■■□□□ 1.3
CLN3-209ENST00000561689 CBWD6Q4V339 395 aa23.18■■□□□ 1.3
CLN3-209ENST00000561689 CBWD3Q5JTY5 395 aa23.18■■□□□ 1.3
CLN3-209ENST00000561689 CBWD5Q5RIA9 395 aa23.18■■□□□ 1.3
CLN3-209ENST00000561689 IQCDQ96DY2 449 aa23.18■■□□□ 1.3
CLN3-209ENST00000561689 FAM213AQ9BRX8 229 aa23.18■■□□□ 1.3
CLN3-209ENST00000561689 NAA15Q9BXJ9 866 aaKnown RBP23.18■■□□□ 1.3
CLN3-209ENST00000561689 ANKFY1Q9P2R3 1169 aa23.18■■□□□ 1.3
CLN3-209ENST00000561689 AKT3Q9Y243 479 aa23.18■■□□□ 1.3
CLN3-209ENST00000561689 MAPK13O15264 365 aa23.18■■□□□ 1.3
CLN3-209ENST00000561689 ASAP2O43150 1006 aa23.18■■□□□ 1.3
CLN3-209ENST00000561689 DUSP11O75319 330 aaKnown RBP23.18■■□□□ 1.3
CLN3-209ENST00000561689 VTNP04004 478 aa23.18■■□□□ 1.3
CLN3-209ENST00000561689 SMIM10L2AP0DMW4 78 aa23.18■■□□□ 1.3
CLN3-209ENST00000561689 SMIM10L2BP0DMW5 78 aa23.18■■□□□ 1.3
CLN3-209ENST00000561689 TMOD1P28289 359 aa23.18■■□□□ 1.3
CLN3-209ENST00000561689 MFSD10Q14728 455 aa23.18■■□□□ 1.3
CLN3-209ENST00000561689 GBP6Q6ZN66 633 aa23.18■■□□□ 1.3
CLN3-209ENST00000561689 FBXL18Q96ME1 805 aa23.18■■□□□ 1.3
CLN3-209ENST00000561689 HAPLN2Q9GZV7 340 aa23.18■■□□□ 1.3
CLN3-209ENST00000561689 MYADML2A6NDP7 307 aa23.17■■□□□ 1.3
CLN3-209ENST00000561689 MSCO60682 206 aa23.17■■□□□ 1.3
CLN3-209ENST00000561689 C6orf222P0C671 652 aaPredicted RBP23.17■■□□□ 1.3
CLN3-209ENST00000561689 FECHP22830 423 aa23.17■■□□□ 1.3
CLN3-209ENST00000561689 PON1P27169 355 aa23.17■■□□□ 1.3
CLN3-209ENST00000561689 CACNB2Q08289 660 aaPredicted RBP23.17■■□□□ 1.3
CLN3-209ENST00000561689 MAPK6Q16659 721 aa23.17■■□□□ 1.3
CLN3-209ENST00000561689 TSR1Q2NL82 804 aaKnown RBP23.17■■□□□ 1.3
CLN3-209ENST00000561689 RAD9BQ6WBX8 426 aa23.17■■□□□ 1.3
CLN3-209ENST00000561689 TOGARAM2Q6ZUX3 1019 aa23.17■■□□□ 1.3
CLN3-209ENST00000561689 CCAR2Q8N163 923 aaKnown RBP23.17■■□□□ 1.3
CLN3-209ENST00000561689 GPD1LQ8N335 351 aa23.17■■□□□ 1.3
CLN3-209ENST00000561689 LMBR1Q8WVP7 490 aa23.17■■□□□ 1.3
CLN3-209ENST00000561689 CCDC127Q96BQ5 260 aa23.17■■□□□ 1.3
CLN3-209ENST00000561689 C2orf40Q9H1Z8 148 aa23.17■■□□□ 1.3
CLN3-209ENST00000561689 NLRC4Q9NPP4 1024 aa23.17■■□□□ 1.3
CLN3-209ENST00000561689 GCNT4Q9P109 453 aa23.17■■□□□ 1.3
CLN3-209ENST00000561689 STYXL1Q9Y6J8 313 aa23.17■■□□□ 1.3
CLN3-209ENST00000561689 INO80B-WBP1J3KQ70 363 aa23.16■■□□□ 1.3
CLN3-209ENST00000561689 PRKCBP05771 671 aa23.16■■□□□ 1.3
CLN3-209ENST00000561689 MATR3P43243 847 aaKnown RBP eCLIP23.16■■□□□ 1.3
CLN3-209ENST00000561689 KCNJ6P48051 423 aa23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms