RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 ARHGAP25P42331 645 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 NOP2P46087 812 aaKnown RBP13.75□□□□□ -0.21
SHMT2-229ENST00000557348 MYL7Q01449 175 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 STRN3Q13033 797 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 CELF3Q5SZQ8 465 aaKnown RBP13.75□□□□□ -0.21
SHMT2-229ENST00000557348 WDR78Q5VTH9 848 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 ICE2Q659A1 982 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 NAPGQ99747 312 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-229ENST00000557348 POLR3FQ9H1D9 316 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-229ENST00000557348 PORCNQ9H237 461 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 ZCCHC17Q9NP64 241 aaKnown RBP13.75□□□□□ -0.21
SHMT2-229ENST00000557348 VTA1Q9NP79 307 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 GPRC5CQ9NQ84 441 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 DIS3Q9Y2L1 958 aaKnown RBP13.75□□□□□ -0.21
SHMT2-229ENST00000557348 LRRC37A2A6NM11 1700 aa13.74□□□□□ -0.21
SHMT2-229ENST00000557348 MYH11P35749 1972 aa13.74□□□□□ -0.21
SHMT2-229ENST00000557348 GSTTP1A0A1W2PQM5 241 aa13.74□□□□□ -0.21
SHMT2-229ENST00000557348 ANO9A1A5B4 782 aa13.74□□□□□ -0.21
SHMT2-229ENST00000557348 FERP16591 822 aa13.74□□□□□ -0.21
SHMT2-229ENST00000557348 GTF2H1P32780 548 aa13.74□□□□□ -0.21
SHMT2-229ENST00000557348 TCF7P36402 384 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-229ENST00000557348 EIF4A3P38919 411 aaKnown RBP13.74□□□□□ -0.21
SHMT2-229ENST00000557348 PRKCIP41743 596 aa13.74□□□□□ -0.21
SHMT2-229ENST00000557348 VAMP7P51809 220 aa13.74□□□□□ -0.21
SHMT2-229ENST00000557348 RAPGEF1Q13905 1077 aa13.74□□□□□ -0.21
SHMT2-229ENST00000557348 LONRF2Q1L5Z9 754 aa13.74□□□□□ -0.21
SHMT2-229ENST00000557348 Q3C1V9 767 aa13.74□□□□□ -0.21
SHMT2-229ENST00000557348 MTERF2Q49AM1 385 aa13.74□□□□□ -0.21
SHMT2-229ENST00000557348 ZNF569Q5MCW4 686 aa13.74□□□□□ -0.21
SHMT2-229ENST00000557348 SLFN12LQ6IEE8 588 aa13.74□□□□□ -0.21
SHMT2-229ENST00000557348 CCDC155Q8N6L0 562 aa13.74□□□□□ -0.21
SHMT2-229ENST00000557348 TMC2Q8TDI7 906 aa13.74□□□□□ -0.21
SHMT2-229ENST00000557348 CRACR2AQ9BSW2 395 aa13.74□□□□□ -0.21
SHMT2-229ENST00000557348 PARD6BQ9BYG5 372 aa13.74□□□□□ -0.21
SHMT2-229ENST00000557348 BCAS3Q9H6U6 928 aa13.74□□□□□ -0.21
SHMT2-229ENST00000557348 NLRC4Q9NPP4 1024 aa13.74□□□□□ -0.21
SHMT2-229ENST00000557348 XPNPEP1Q9NQW7 623 aa13.74□□□□□ -0.21
SHMT2-229ENST00000557348 ST7Q9NRC1 585 aa13.74□□□□□ -0.21
SHMT2-229ENST00000557348 SLC5A4Q9NY91 659 aa13.74□□□□□ -0.21
SHMT2-229ENST00000557348 RRP15Q9Y3B9 282 aaKnown RBP13.74□□□□□ -0.21
SHMT2-229ENST00000557348 KIAA1217Q5T5P2 1943 aa13.74□□□□□ -0.21
SHMT2-229ENST00000557348 TMEM150BA6NC51 233 aa13.73□□□□□ -0.21
SHMT2-229ENST00000557348 BTBD19C9JJ37 291 aa13.73□□□□□ -0.21
SHMT2-229ENST00000557348 PGK2P07205 417 aa13.73□□□□□ -0.21
SHMT2-229ENST00000557348 CNGA1P29973 690 aa13.73□□□□□ -0.21
SHMT2-229ENST00000557348 EFNA5P52803 228 aa13.73□□□□□ -0.21
SHMT2-229ENST00000557348 KLHL30Q0D2K2 578 aa13.73□□□□□ -0.21
SHMT2-229ENST00000557348 IRF5Q13568 498 aa13.73□□□□□ -0.21
SHMT2-229ENST00000557348 HSP90B2PQ58FF3 399 aa13.73□□□□□ -0.21
SHMT2-229ENST00000557348 SPRYD7Q5W111 196 aa13.73□□□□□ -0.21
SHMT2-229ENST00000557348 HGSNATQ68CP4 663 aa13.73□□□□□ -0.21
SHMT2-229ENST00000557348 KSR1Q8IVT5 923 aa13.73□□□□□ -0.21
SHMT2-229ENST00000557348 SUGP1Q8IWZ8 645 aaKnown RBP13.73□□□□□ -0.21
SHMT2-229ENST00000557348 DHX37Q8IY37 1157 aaKnown RBP13.73□□□□□ -0.21
SHMT2-229ENST00000557348 TRIM58Q8NG06 486 aa13.73□□□□□ -0.21
SHMT2-229ENST00000557348 FAM81BQ96LP2 452 aa13.73□□□□□ -0.21
SHMT2-229ENST00000557348 FGD4Q96M96 766 aa13.73□□□□□ -0.21
SHMT2-229ENST00000557348 WDR24Q96S15 920 aa13.73□□□□□ -0.21
SHMT2-229ENST00000557348 TACO1Q9BSH4 297 aaKnown RBP13.73□□□□□ -0.21
SHMT2-229ENST00000557348 SMARCAD1Q9H4L7 1026 aa13.73□□□□□ -0.21
SHMT2-229ENST00000557348 RSPH14Q9UHP6 348 aa13.73□□□□□ -0.21
SHMT2-229ENST00000557348 USP20Q9Y2K6 914 aa13.73□□□□□ -0.21
SHMT2-229ENST00000557348 REXO2Q9Y3B8 237 aaKnown RBP13.73□□□□□ -0.21
SHMT2-229ENST00000557348 ARID2Q68CP9 1835 aa13.73□□□□□ -0.21
SHMT2-229ENST00000557348 HNRNPDLO14979 420 aaKnown RBP13.72□□□□□ -0.21
SHMT2-229ENST00000557348 POLR3GO15318 223 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-229ENST00000557348 PJA2O43164 708 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 MAFO75444 373 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-229ENST00000557348 LDHAP00338 332 aaKnown RBP13.72□□□□□ -0.21
SHMT2-229ENST00000557348 PIGRP01833 764 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 MAPK4P31152 587 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 STAT1P42224 750 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 LAMC2Q13753 1193 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 TARBP2Q15633 366 aaKnown RBP13.72□□□□□ -0.21
SHMT2-229ENST00000557348 FAM110CQ1W6H9 321 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 ASTE1Q2TB18 679 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-229ENST00000557348 CCDC62Q6P9F0 684 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 RNF10Q8N5U6 811 aaKnown RBP13.72□□□□□ -0.21
SHMT2-229ENST00000557348 ATP8B4Q8TF62 1192 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 SECISBP2LQ93073 1101 aaKnown RBP13.72□□□□□ -0.21
SHMT2-229ENST00000557348 BICD1Q96G01 975 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 FBXL18Q96ME1 805 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 ALS2CR12Q96Q35 445 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 STK33Q9BYT3 514 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 TMEM134Q9H6X4 195 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 APEX2Q9UBZ4 518 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 CDC23Q9UJX2 597 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 GUCA1BQ9UMX6 200 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 PCDHA13Q9Y5I0 950 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 TACC1O75410 805 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 SASH3O75995 380 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 CELF2O95319 508 aaKnown RBP13.72□□□□□ -0.21
SHMT2-229ENST00000557348 TXNP10599 105 aaKnown RBP13.72□□□□□ -0.21
SHMT2-229ENST00000557348 CYP2C8P10632 490 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 SLC9A1P19634 815 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 ARL2P36404 184 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 FSTL1Q12841 308 aa13.72□□□□□ -0.21
SHMT2-229ENST00000557348 MXD4Q14582 209 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-229ENST00000557348 SNRNP35Q16560 246 aaKnown RBP13.72□□□□□ -0.21
SHMT2-229ENST00000557348 SLC18A3Q16572 532 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms