RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 LARP1BQ659C4 914 aaKnown RBP17.79■□□□□ 0.44
CCDC88C-209ENST00000554872 AGMOQ6ZNB7 445 aa17.79■□□□□ 0.44
CCDC88C-209ENST00000554872 EFHBQ8N7U6 833 aa17.79■□□□□ 0.44
CCDC88C-209ENST00000554872 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.79■□□□□ 0.44
CCDC88C-209ENST00000554872 CSRNP2Q9H175 543 aa17.79■□□□□ 0.44
CCDC88C-209ENST00000554872 C2orf40Q9H1Z8 148 aa17.79■□□□□ 0.44
CCDC88C-209ENST00000554872 NGRNQ9NPE2 291 aaKnown RBP17.79■□□□□ 0.44
CCDC88C-209ENST00000554872 KANSL3Q9P2N6 904 aa17.79■□□□□ 0.44
CCDC88C-209ENST00000554872 PUF60Q9UHX1 559 aaKnown RBP17.79■□□□□ 0.44
CCDC88C-209ENST00000554872 INO80B-WBP1J3KQ70 363 aa17.78■□□□□ 0.44
CCDC88C-209ENST00000554872 BMP15O95972 392 aa17.78■□□□□ 0.44
CCDC88C-209ENST00000554872 PDCP20941 246 aa17.78■□□□□ 0.44
CCDC88C-209ENST00000554872 NAMPTP43490 491 aa17.78■□□□□ 0.44
CCDC88C-209ENST00000554872 KRT17Q04695 432 aa17.78■□□□□ 0.44
CCDC88C-209ENST00000554872 PPP2R5AQ15172 486 aa17.78■□□□□ 0.44
CCDC88C-209ENST00000554872 KRT79Q5XKE5 535 aa17.78■□□□□ 0.44
CCDC88C-209ENST00000554872 SNX29Q8TEQ0 813 aa17.78■□□□□ 0.44
CCDC88C-209ENST00000554872 KIFAP3Q92845 792 aa17.78■□□□□ 0.44
CCDC88C-209ENST00000554872 INTS4Q96HW7 963 aaKnown RBP17.78■□□□□ 0.44
CCDC88C-209ENST00000554872 FZD8Q9H461 694 aa17.78■□□□□ 0.44
CCDC88C-209ENST00000554872 RSAD1Q9HA92 442 aa17.78■□□□□ 0.44
CCDC88C-209ENST00000554872 GPRC5CQ9NQ84 441 aa17.78■□□□□ 0.44
CCDC88C-209ENST00000554872 TBC1D13Q9NVG8 400 aa17.78■□□□□ 0.44
CCDC88C-209ENST00000554872 PRMT7Q9NVM4 692 aaPredicted RBP17.78■□□□□ 0.44
CCDC88C-209ENST00000554872 STK39Q9UEW8 545 aa17.78■□□□□ 0.44
CCDC88C-209ENST00000554872 FAM50BQ9Y247 325 aa17.78■□□□□ 0.44
CCDC88C-209ENST00000554872 A0A1B0GUA9 196 aa17.77■□□□□ 0.44
CCDC88C-209ENST00000554872 GRXCR2A6NFK2 248 aa17.77■□□□□ 0.44
CCDC88C-209ENST00000554872 MEIS3P2A8K0S8 358 aa17.77■□□□□ 0.44
CCDC88C-209ENST00000554872 EYA4O95677 639 aa17.77■□□□□ 0.44
CCDC88C-209ENST00000554872 ARF4P18085 180 aaPredicted RBP17.77■□□□□ 0.44
CCDC88C-209ENST00000554872 ALDH7A1P49419 539 aaKnown RBP17.77■□□□□ 0.44
CCDC88C-209ENST00000554872 BCAR1P56945 870 aa17.77■□□□□ 0.44
CCDC88C-209ENST00000554872 ADAM15Q13444 863 aa17.77■□□□□ 0.44
CCDC88C-209ENST00000554872 ADGRD2Q7Z7M1 963 aa17.77■□□□□ 0.44
CCDC88C-209ENST00000554872 ZBTB8OSQ8IWT0 167 aa17.77■□□□□ 0.44
CCDC88C-209ENST00000554872 SMG8Q8ND04 991 aaKnown RBP17.77■□□□□ 0.44
CCDC88C-209ENST00000554872 URGCPQ8TCY9 931 aa17.77■□□□□ 0.44
CCDC88C-209ENST00000554872 LPPQ93052 612 aa17.77■□□□□ 0.44
CCDC88C-209ENST00000554872 MMTAG2Q9BU76 263 aaKnown RBP17.77■□□□□ 0.44
CCDC88C-209ENST00000554872 BHMT2Q9H2M3 363 aa17.77■□□□□ 0.44
CCDC88C-209ENST00000554872 DDX19AQ9NUU7 478 aaKnown RBP17.77■□□□□ 0.44
CCDC88C-209ENST00000554872 CLDND1Q9NY35 253 aa17.77■□□□□ 0.44
CCDC88C-209ENST00000554872 KIAA1024Q9UPX6 916 aa17.77■□□□□ 0.44
CCDC88C-209ENST00000554872 A0A087WWV3 80 aa17.76■□□□□ 0.43
CCDC88C-209ENST00000554872 LRRIQ4A6NIV6 560 aa17.76■□□□□ 0.43
CCDC88C-209ENST00000554872 TBX10O75333 385 aa17.76■□□□□ 0.43
CCDC88C-209ENST00000554872 PTCRAQ6ISU1 281 aaPredicted RBP17.76■□□□□ 0.43
CCDC88C-209ENST00000554872 MSLNLQ96KJ4 702 aa17.76■□□□□ 0.43
CCDC88C-209ENST00000554872 AK8Q96MA6 479 aa17.76■□□□□ 0.43
CCDC88C-209ENST00000554872 TMEM175Q9BSA9 504 aa17.76■□□□□ 0.43
CCDC88C-209ENST00000554872 TIPINQ9BVW5 301 aa17.76■□□□□ 0.43
CCDC88C-209ENST00000554872 CCDC113Q9H0I3 377 aa17.76■□□□□ 0.43
CCDC88C-209ENST00000554872 NRDE2Q9H7Z3 1164 aa17.76■□□□□ 0.43
CCDC88C-209ENST00000554872 DNM3Q9UQ16 869 aa17.76■□□□□ 0.43
CCDC88C-209ENST00000554872 IPPQ9Y573 584 aa17.76■□□□□ 0.43
CCDC88C-209ENST00000554872 GALTP07902 379 aa17.75■□□□□ 0.43
CCDC88C-209ENST00000554872 EFNA5P52803 228 aa17.75■□□□□ 0.43
CCDC88C-209ENST00000554872 ERVFC1P60507 584 aa17.75■□□□□ 0.43
CCDC88C-209ENST00000554872 KCNC3Q14003 757 aa17.75■□□□□ 0.43
CCDC88C-209ENST00000554872 DUSP6Q16828 381 aa17.75■□□□□ 0.43
CCDC88C-209ENST00000554872 SLC27A1Q6PCB7 646 aa17.75■□□□□ 0.43
CCDC88C-209ENST00000554872 TMEM184AQ6ZMB5 413 aa17.75■□□□□ 0.43
CCDC88C-209ENST00000554872 HACE1Q8IYU2 909 aa17.75■□□□□ 0.43
CCDC88C-209ENST00000554872 BSNDQ8WZ55 320 aa17.75■□□□□ 0.43
CCDC88C-209ENST00000554872 EIF2AQ9BY44 585 aaKnown RBP17.75■□□□□ 0.43
CCDC88C-209ENST00000554872 NT5C3AQ9H0P0 336 aa17.75■□□□□ 0.43
CCDC88C-209ENST00000554872 C17orf75Q9HAS0 396 aa17.75■□□□□ 0.43
CCDC88C-209ENST00000554872 PRKAG3Q9UGI9 489 aa17.75■□□□□ 0.43
CCDC88C-209ENST00000554872 GIT1Q9Y2X7 761 aa17.75■□□□□ 0.43
CCDC88C-209ENST00000554872 IRAK3Q9Y616 596 aa17.75■□□□□ 0.43
CCDC88C-209ENST00000554872 PHLPP2Q6ZVD8 1323 aa17.74■□□□□ 0.43
CCDC88C-209ENST00000554872 TCF20Q9UGU0 1960 aaKnown RBP17.74■□□□□ 0.43
CCDC88C-209ENST00000554872 PP2D1A8MPX8 630 aa17.74■□□□□ 0.43
CCDC88C-209ENST00000554872 H3BQ06 376 aaPredicted RBP17.74■□□□□ 0.43
CCDC88C-209ENST00000554872 ZC3H11AO75152 810 aaKnown RBP eCLIP17.74■□□□□ 0.43
CCDC88C-209ENST00000554872 GLP2RO95838 553 aa17.74■□□□□ 0.43
CCDC88C-209ENST00000554872 ITGA4P13612 1032 aa17.74■□□□□ 0.43
CCDC88C-209ENST00000554872 PBX3P40426 434 aa17.74■□□□□ 0.43
CCDC88C-209ENST00000554872 NRIP1P48552 1158 aa17.74■□□□□ 0.43
CCDC88C-209ENST00000554872 COASYQ13057 564 aa17.74■□□□□ 0.43
CCDC88C-209ENST00000554872 SMAD4Q13485 552 aaKnown RBP17.74■□□□□ 0.43
CCDC88C-209ENST00000554872 MAPK6Q16659 721 aa17.74■□□□□ 0.43
CCDC88C-209ENST00000554872 FAM178BQ8IXR5 827 aa17.74■□□□□ 0.43
CCDC88C-209ENST00000554872 TMEM169Q96HH4 297 aa17.74■□□□□ 0.43
CCDC88C-209ENST00000554872 IGSF21Q96ID5 467 aa17.74■□□□□ 0.43
CCDC88C-209ENST00000554872 CPB2Q96IY4 423 aa17.74■□□□□ 0.43
CCDC88C-209ENST00000554872 TCF25Q9BQ70 676 aa17.74■□□□□ 0.43
CCDC88C-209ENST00000554872 TLE6Q9H808 572 aa17.74■□□□□ 0.43
CCDC88C-209ENST00000554872 KCND2Q9NZV8 630 aa17.74■□□□□ 0.43
CCDC88C-209ENST00000554872 ACKR2O00590 384 aa17.73■□□□□ 0.43
CCDC88C-209ENST00000554872 N4BP3O15049 544 aa17.73■□□□□ 0.43
CCDC88C-209ENST00000554872 B4GALT5O43286 388 aa17.73■□□□□ 0.43
CCDC88C-209ENST00000554872 GUCY2CP25092 1073 aa17.73■□□□□ 0.43
CCDC88C-209ENST00000554872 GTF2F1P35269 517 aaKnown RBP eCLIP17.73■□□□□ 0.43
CCDC88C-209ENST00000554872 RNASELQ05823 741 aaKnown RBP17.73■□□□□ 0.43
CCDC88C-209ENST00000554872 DLX2Q07687 328 aaPredicted RBP17.73■□□□□ 0.43
CCDC88C-209ENST00000554872 DSC1Q08554 894 aa17.73■□□□□ 0.43
CCDC88C-209ENST00000554872 SMAD2Q15796 467 aaKnown RBP17.73■□□□□ 0.43
CCDC88C-209ENST00000554872 MAEAQ7L5Y9 396 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms