RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 TBX20Q9UMR3 447 aa13.47□□□□□ -0.25
SHMT2-209ENST00000553949 ACKR2O00590 384 aa13.46□□□□□ -0.25
SHMT2-209ENST00000553949 B4GALT5O43286 388 aa13.46□□□□□ -0.25
SHMT2-209ENST00000553949 PFKMP08237 780 aa13.46□□□□□ -0.25
SHMT2-209ENST00000553949 ACRP10323 421 aa13.46□□□□□ -0.25
SHMT2-209ENST00000553949 MLLT1Q03111 559 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-209ENST00000553949 PRPF4BQ13523 1007 aaKnown RBP13.46□□□□□ -0.25
SHMT2-209ENST00000553949 ALCAMQ13740 583 aa13.46□□□□□ -0.25
SHMT2-209ENST00000553949 SKOR2Q2VWA4 1001 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-209ENST00000553949 STXBP4Q6ZWJ1 553 aa13.46□□□□□ -0.25
SHMT2-209ENST00000553949 EPM2AIP1Q7L775 607 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-209ENST00000553949 KIAA0895Q8NCT3 520 aa13.46□□□□□ -0.25
SHMT2-209ENST00000553949 DBF4BQ8NFT6 615 aa13.46□□□□□ -0.25
SHMT2-209ENST00000553949 APBB2Q92870 758 aa13.46□□□□□ -0.25
SHMT2-209ENST00000553949 HVCN1Q96D96 273 aa13.46□□□□□ -0.25
SHMT2-209ENST00000553949 PRIMPOLQ96LW4 560 aa13.46□□□□□ -0.25
SHMT2-209ENST00000553949 TMX1Q9H3N1 280 aa13.46□□□□□ -0.25
SHMT2-209ENST00000553949 IL23AQ9NPF7 189 aa13.46□□□□□ -0.25
SHMT2-209ENST00000553949 AGPAT5Q9NUQ2 364 aa13.46□□□□□ -0.25
SHMT2-209ENST00000553949 TMEM63CQ9P1W3 806 aa13.46□□□□□ -0.25
SHMT2-209ENST00000553949 PCDHB13Q9Y5F0 798 aa13.46□□□□□ -0.25
SHMT2-209ENST00000553949 CNTNAP2Q9UHC6 1331 aa13.45□□□□□ -0.26
SHMT2-209ENST00000553949 TTLL13PA6NNM8 815 aa13.45□□□□□ -0.26
SHMT2-209ENST00000553949 H0YGN5 161 aa13.45□□□□□ -0.26
SHMT2-209ENST00000553949 EIF3DO15371 548 aaKnown RBP eCLIP13.45□□□□□ -0.26
SHMT2-209ENST00000553949 PRPF6O94906 941 aaKnown RBP13.45□□□□□ -0.26
SHMT2-209ENST00000553949 EDN1P05305 212 aa13.45□□□□□ -0.26
SHMT2-209ENST00000553949 HOXA11P31270 313 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-209ENST00000553949 EPHB4P54760 987 aa13.45□□□□□ -0.26
SHMT2-209ENST00000553949 NCBP1Q09161 790 aaKnown RBP13.45□□□□□ -0.26
SHMT2-209ENST00000553949 TCTN1Q2MV58 587 aa13.45□□□□□ -0.26
SHMT2-209ENST00000553949 L1TD1Q5T7N2 865 aaKnown RBP13.45□□□□□ -0.26
SHMT2-209ENST00000553949 ZNF658Q5TYW1 1059 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-209ENST00000553949 CAVIN1Q6NZI2 390 aaKnown RBP13.45□□□□□ -0.26
SHMT2-209ENST00000553949 CNKSR3Q6P9H4 555 aa13.45□□□□□ -0.26
SHMT2-209ENST00000553949 RBM43Q6ZSC3 357 aaKnown RBP13.45□□□□□ -0.26
SHMT2-209ENST00000553949 C16orf59Q7L2K0 433 aa13.45□□□□□ -0.26
SHMT2-209ENST00000553949 MAP4K3Q8IVH8 894 aa13.45□□□□□ -0.26
SHMT2-209ENST00000553949 SCFD1Q8WVM8 642 aa13.45□□□□□ -0.26
SHMT2-209ENST00000553949 SYAP1Q96A49 352 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-209ENST00000553949 MRPL4Q9BYD3 311 aaKnown RBP13.45□□□□□ -0.26
SHMT2-209ENST00000553949 PIN4Q9Y237 131 aaKnown RBP13.45□□□□□ -0.26
SHMT2-209ENST00000553949 USP20Q9Y2K6 914 aa13.45□□□□□ -0.26
SHMT2-209ENST00000553949 GDAQ9Y2T3 454 aa13.45□□□□□ -0.26
SHMT2-209ENST00000553949 TANC1Q9C0D5 1861 aa13.44□□□□□ -0.26
SHMT2-209ENST00000553949 BIN1O00499 593 aa13.44□□□□□ -0.26
SHMT2-209ENST00000553949 ARF4P18085 180 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-209ENST00000553949 AXLP30530 894 aa13.44□□□□□ -0.26
SHMT2-209ENST00000553949 MAGEA10P43363 369 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-209ENST00000553949 KCNA1Q09470 495 aa13.44□□□□□ -0.26
SHMT2-209ENST00000553949 MORC3Q14149 939 aa13.44□□□□□ -0.26
SHMT2-209ENST00000553949 DSC3Q14574 896 aa13.44□□□□□ -0.26
SHMT2-209ENST00000553949 BMT2Q1RMZ1 405 aa13.44□□□□□ -0.26
SHMT2-209ENST00000553949 TMEM132AQ24JP5 1023 aa13.44□□□□□ -0.26
SHMT2-209ENST00000553949 ISM2Q6H9L7 571 aa13.44□□□□□ -0.26
SHMT2-209ENST00000553949 FAM43BQ6ZT52 329 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-209ENST00000553949 TRIML1Q8N9V2 468 aa13.44□□□□□ -0.26
SHMT2-209ENST00000553949 ZNF507Q8TCN5 953 aa13.44□□□□□ -0.26
SHMT2-209ENST00000553949 CPB2Q96IY4 423 aa13.44□□□□□ -0.26
SHMT2-209ENST00000553949 ACCSQ96QU6 501 aa13.44□□□□□ -0.26
SHMT2-209ENST00000553949 TARS2Q9BW92 718 aaKnown RBP13.44□□□□□ -0.26
SHMT2-209ENST00000553949 FTHL17Q9BXU8 183 aa13.44□□□□□ -0.26
SHMT2-209ENST00000553949 GTPBP4Q9BZE4 634 aaKnown RBP13.44□□□□□ -0.26
SHMT2-209ENST00000553949 TMEM206Q9H813 350 aa13.44□□□□□ -0.26
SHMT2-209ENST00000553949 CHST12Q9NRB3 414 aa13.44□□□□□ -0.26
SHMT2-209ENST00000553949 EXOC7Q9UPT5 735 aa13.44□□□□□ -0.26
SHMT2-209ENST00000553949 SIP14410 1827 aa13.43□□□□□ -0.26
SHMT2-209ENST00000553949 UBE4BO95155 1302 aa13.43□□□□□ -0.26
SHMT2-209ENST00000553949 A0A1B0GUA9 196 aa13.43□□□□□ -0.26
SHMT2-209ENST00000553949 MGEA5O60502 916 aa13.43□□□□□ -0.26
SHMT2-209ENST00000553949 PIGRP01833 764 aa13.43□□□□□ -0.26
SHMT2-209ENST00000553949 ZSCAN20P17040 1043 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-209ENST00000553949 HOXD13P35453 343 aa13.43□□□□□ -0.26
SHMT2-209ENST00000553949 IKBKEQ14164 716 aa13.43□□□□□ -0.26
SHMT2-209ENST00000553949 ATF7IP2Q5U623 682 aa13.43□□□□□ -0.26
SHMT2-209ENST00000553949 NOTUMQ6P988 496 aa13.43□□□□□ -0.26
SHMT2-209ENST00000553949 PSRC1Q6PGN9 363 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-209ENST00000553949 ZPBP2Q6X784 338 aa13.43□□□□□ -0.26
SHMT2-209ENST00000553949 SMYD4Q8IYR2 804 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-209ENST00000553949 MYOCDQ8IZQ8 938 aa13.43□□□□□ -0.26
SHMT2-209ENST00000553949 CCDC51Q96ER9 411 aa13.43□□□□□ -0.26
SHMT2-209ENST00000553949 BICD1Q96G01 975 aa13.43□□□□□ -0.26
SHMT2-209ENST00000553949 ACO2Q99798 780 aaKnown RBP13.43□□□□□ -0.26
SHMT2-209ENST00000553949 ADAM2Q99965 735 aa13.43□□□□□ -0.26
SHMT2-209ENST00000553949 LTBP2Q14767 1821 aa13.42□□□□□ -0.26
SHMT2-209ENST00000553949 ABHD14A-ACY1A0A1B0GW23 586 aa13.42□□□□□ -0.26
SHMT2-209ENST00000553949 ENPP3O14638 875 aa13.42□□□□□ -0.26
SHMT2-209ENST00000553949 HNRNPDLO14979 420 aaKnown RBP13.42□□□□□ -0.26
SHMT2-209ENST00000553949 N4BP3O15049 544 aa13.42□□□□□ -0.26
SHMT2-209ENST00000553949 KIF20AO95235 890 aa13.42□□□□□ -0.26
SHMT2-209ENST00000553949 FGBP02675 491 aa13.42□□□□□ -0.26
SHMT2-209ENST00000553949 ACTN1P12814 892 aa13.42□□□□□ -0.26
SHMT2-209ENST00000553949 BMP6P22004 513 aa13.42□□□□□ -0.26
SHMT2-209ENST00000553949 LIG4P49917 911 aa13.42□□□□□ -0.26
SHMT2-209ENST00000553949 TMEM240Q5SV17 173 aa13.42□□□□□ -0.26
SHMT2-209ENST00000553949 TWF2Q6IBS0 349 aaKnown RBP13.42□□□□□ -0.26
SHMT2-209ENST00000553949 ZNF365Q70YC5 407 aa13.42□□□□□ -0.26
SHMT2-209ENST00000553949 RTN4RL1Q86UN2 441 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-209ENST00000553949 CDR2LQ86X02 465 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-209ENST00000553949 NELFCDQ8IXH7 590 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms