RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 GRAMD1CQ8IYS0 662 aa13.4□□□□□ -0.26
DDX55-210ENST00000543016 SPATA20Q8TB22 786 aa13.4□□□□□ -0.26
DDX55-210ENST00000543016 SMARCE1Q969G3 411 aa13.4□□□□□ -0.26
DDX55-210ENST00000543016 FIZ1Q96SL8 496 aa13.4□□□□□ -0.26
DDX55-210ENST00000543016 GDF15Q99988 308 aa13.4□□□□□ -0.26
DDX55-210ENST00000543016 MRPL4Q9BYD3 311 aaKnown RBP13.4□□□□□ -0.26
DDX55-210ENST00000543016 CLSTN2Q9H4D0 955 aa13.4□□□□□ -0.26
DDX55-210ENST00000543016 TMEM206Q9H813 350 aa13.4□□□□□ -0.26
DDX55-210ENST00000543016 POLD4Q9HCU8 107 aa13.4□□□□□ -0.26
DDX55-210ENST00000543016 AGPAT5Q9NUQ2 364 aa13.4□□□□□ -0.26
DDX55-210ENST00000543016 TANC1Q9C0D5 1861 aa13.4□□□□□ -0.26
DDX55-210ENST00000543016 UBE4BO95155 1302 aa13.39□□□□□ -0.27
DDX55-210ENST00000543016 EIF3DO15371 548 aaKnown RBP eCLIP13.39□□□□□ -0.27
DDX55-210ENST00000543016 KLRC4O43908 158 aa13.39□□□□□ -0.27
DDX55-210ENST00000543016 PRKCBP05771 671 aa13.39□□□□□ -0.27
DDX55-210ENST00000543016 RAB27AP51159 221 aa13.39□□□□□ -0.27
DDX55-210ENST00000543016 SNRPFP62306 86 aaKnown RBP13.39□□□□□ -0.27
DDX55-210ENST00000543016 PRPF4BQ13523 1007 aaKnown RBP13.39□□□□□ -0.27
DDX55-210ENST00000543016 AMHR2Q16671 573 aa13.39□□□□□ -0.27
DDX55-210ENST00000543016 SKOR2Q2VWA4 1001 aaPredicted RBP13.39□□□□□ -0.27
DDX55-210ENST00000543016 KMT5BQ4FZB7 885 aa13.39□□□□□ -0.27
DDX55-210ENST00000543016 TMEM240Q5SV17 173 aa13.39□□□□□ -0.27
DDX55-210ENST00000543016 NOTUMQ6P988 496 aa13.39□□□□□ -0.27
DDX55-210ENST00000543016 RSPH1Q8WYR4 309 aa13.39□□□□□ -0.27
DDX55-210ENST00000543016 HERVK_113Q902F9 699 aa13.39□□□□□ -0.27
DDX55-210ENST00000543016 SYAP1Q96A49 352 aaPredicted RBP13.39□□□□□ -0.27
DDX55-210ENST00000543016 ZNF668Q96K58 619 aaPredicted RBP13.39□□□□□ -0.27
DDX55-210ENST00000543016 STRA6Q9BX79 667 aa13.39□□□□□ -0.27
DDX55-210ENST00000543016 TSPYL2Q9H2G4 693 aaPredicted RBP13.39□□□□□ -0.27
DDX55-210ENST00000543016 MINDY3Q9H8M7 445 aa13.39□□□□□ -0.27
DDX55-210ENST00000543016 TBX20Q9UMR3 447 aa13.39□□□□□ -0.27
DDX55-210ENST00000543016 ADGRA3Q8IWK6 1321 aa13.39□□□□□ -0.27
DDX55-210ENST00000543016 CNTNAP2Q9UHC6 1331 aa13.39□□□□□ -0.27
DDX55-210ENST00000543016 A0A1B0GUA9 196 aa13.38□□□□□ -0.27
DDX55-210ENST00000543016 N4BP3O15049 544 aa13.38□□□□□ -0.27
DDX55-210ENST00000543016 TSPAN1O60635 241 aa13.38□□□□□ -0.27
DDX55-210ENST00000543016 PPP1R37O75864 691 aa13.38□□□□□ -0.27
DDX55-210ENST00000543016 GCNT3O95395 438 aa13.38□□□□□ -0.27
DDX55-210ENST00000543016 PIGRP01833 764 aa13.38□□□□□ -0.27
DDX55-210ENST00000543016 PPP1R2P41236 205 aa13.38□□□□□ -0.27
DDX55-210ENST00000543016 SARSP49591 514 aaKnown RBP13.38□□□□□ -0.27
DDX55-210ENST00000543016 PNOCQ13519 176 aa13.38□□□□□ -0.27
DDX55-210ENST00000543016 DSC3Q14574 896 aa13.38□□□□□ -0.27
DDX55-210ENST00000543016 ZNF365Q70YC5 407 aa13.38□□□□□ -0.27
DDX55-210ENST00000543016 SLC24A5Q71RS6 500 aa13.38□□□□□ -0.27
DDX55-210ENST00000543016 C16orf59Q7L2K0 433 aa13.38□□□□□ -0.27
DDX55-210ENST00000543016 MAP4K3Q8IVH8 894 aa13.38□□□□□ -0.27
DDX55-210ENST00000543016 TRIML1Q8N9V2 468 aa13.38□□□□□ -0.27
DDX55-210ENST00000543016 PHOSPHO2Q8TCD6 241 aa13.38□□□□□ -0.27
DDX55-210ENST00000543016 GPT2Q8TD30 523 aa13.38□□□□□ -0.27
DDX55-210ENST00000543016 VWCEQ96DN2 955 aa13.38□□□□□ -0.27
DDX55-210ENST00000543016 ACCSQ96QU6 501 aa13.38□□□□□ -0.27
DDX55-210ENST00000543016 KIFC3Q9BVG8 833 aa13.38□□□□□ -0.27
DDX55-210ENST00000543016 UBE2OQ9C0C9 1292 aaKnown RBP13.38□□□□□ -0.27
DDX55-210ENST00000543016 NUP62CLQ9H1M0 184 aa13.38□□□□□ -0.27
DDX55-210ENST00000543016 RGS18Q9NS28 235 aa13.38□□□□□ -0.27
DDX55-210ENST00000543016 PIN4Q9Y237 131 aaKnown RBP13.38□□□□□ -0.27
DDX55-210ENST00000543016 TNFSF13BQ9Y275 285 aa13.38□□□□□ -0.27
DDX55-210ENST00000543016 PCDHA5Q9Y5H7 936 aa13.38□□□□□ -0.27
DDX55-210ENST00000543016 MYH11P35749 1972 aa13.38□□□□□ -0.27
DDX55-210ENST00000543016 LTBP2Q14767 1821 aa13.37□□□□□ -0.27
DDX55-210ENST00000543016 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.37□□□□□ -0.27
DDX55-210ENST00000543016 A0A1W2PPC1 479 aa13.37□□□□□ -0.27
DDX55-210ENST00000543016 ENPP3O14638 875 aa13.37□□□□□ -0.27
DDX55-210ENST00000543016 ZNF623O75123 536 aa13.37□□□□□ -0.27
DDX55-210ENST00000543016 TOM1L1O75674 476 aa13.37□□□□□ -0.27
DDX55-210ENST00000543016 AMHP03971 560 aa13.37□□□□□ -0.27
DDX55-210ENST00000543016 PRR29P0C7W0 189 aa13.37□□□□□ -0.27
DDX55-210ENST00000543016 ACRP10323 421 aa13.37□□□□□ -0.27
DDX55-210ENST00000543016 ARF4P18085 180 aaPredicted RBP13.37□□□□□ -0.27
DDX55-210ENST00000543016 CASP1P29466 404 aa13.37□□□□□ -0.27
DDX55-210ENST00000543016 NMT1P30419 496 aaKnown RBP13.37□□□□□ -0.27
DDX55-210ENST00000543016 HOXA11P31270 313 aaPredicted RBP13.37□□□□□ -0.27
DDX55-210ENST00000543016 KCNJ6P48051 423 aa13.37□□□□□ -0.27
DDX55-210ENST00000543016 FAM189BP81408 668 aa13.37□□□□□ -0.27
DDX55-210ENST00000543016 HSP90AA2PQ14568 343 aaPredicted RBP13.37□□□□□ -0.27
DDX55-210ENST00000543016 KYAT1Q16773 422 aa13.37□□□□□ -0.27
DDX55-210ENST00000543016 BMT2Q1RMZ1 405 aa13.37□□□□□ -0.27
DDX55-210ENST00000543016 TMEM132AQ24JP5 1023 aa13.37□□□□□ -0.27
DDX55-210ENST00000543016 L1TD1Q5T7N2 865 aaKnown RBP13.37□□□□□ -0.27
DDX55-210ENST00000543016 SLFN12LQ6IEE8 588 aa13.37□□□□□ -0.27
DDX55-210ENST00000543016 EPM2AIP1Q7L775 607 aaPredicted RBP13.37□□□□□ -0.27
DDX55-210ENST00000543016 HACE1Q8IYU2 909 aa13.37□□□□□ -0.27
DDX55-210ENST00000543016 ZNF507Q8TCN5 953 aa13.37□□□□□ -0.27
DDX55-210ENST00000543016 ADAM2Q99965 735 aa13.37□□□□□ -0.27
DDX55-210ENST00000543016 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.37□□□□□ -0.27
DDX55-210ENST00000543016 ADPGKQ9BRR6 497 aa13.37□□□□□ -0.27
DDX55-210ENST00000543016 TMX1Q9H3N1 280 aa13.37□□□□□ -0.27
DDX55-210ENST00000543016 ELAC1Q9H777 363 aaKnown RBP13.37□□□□□ -0.27
DDX55-210ENST00000543016 KIAA1468Q9P260 1216 aa13.37□□□□□ -0.27
DDX55-210ENST00000543016 CGNQ9P2M7 1197 aaKnown RBP13.37□□□□□ -0.27
DDX55-210ENST00000543016 A0A0U1RQF3 1178 aa13.36□□□□□ -0.27
DDX55-210ENST00000543016 CSDE1O75534 798 aaKnown RBP13.36□□□□□ -0.27
DDX55-210ENST00000543016 EOMESO95936 686 aa13.36□□□□□ -0.27
DDX55-210ENST00000543016 STAG3L1P0CL83 205 aa13.36□□□□□ -0.27
DDX55-210ENST00000543016 EPHB4P54760 987 aa13.36□□□□□ -0.27
DDX55-210ENST00000543016 KLHL40Q2TBA0 621 aa13.36□□□□□ -0.27
DDX55-210ENST00000543016 DCAF4L1Q3SXM0 396 aa13.36□□□□□ -0.27
DDX55-210ENST00000543016 COBLL1Q53SF7 1204 aa13.36□□□□□ -0.27
DDX55-210ENST00000543016 ZNF658Q5TYW1 1059 aaPredicted RBP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms