RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 KLHL5Q96PQ7 755 aa17.32■□□□□ 0.36
CLSTN3-213ENST00000541953 RNF39Q9H2S5 420 aa17.32■□□□□ 0.36
CLSTN3-213ENST00000541953 DZANK1Q9NVP4 752 aa17.32■□□□□ 0.36
CLSTN3-213ENST00000541953 DBR1Q9UK59 544 aaKnown RBP17.32■□□□□ 0.36
CLSTN3-213ENST00000541953 FRYLO94915 3013 aa17.32■□□□□ 0.36
CLSTN3-213ENST00000541953 SPTBN4Q9H254 2564 aa17.31■□□□□ 0.36
CLSTN3-213ENST00000541953 GALR2O43603 387 aaPredicted RBP17.31■□□□□ 0.36
CLSTN3-213ENST00000541953 N4BP1O75113 896 aaKnown RBP17.31■□□□□ 0.36
CLSTN3-213ENST00000541953 QARSP47897 775 aaKnown RBP17.31■□□□□ 0.36
CLSTN3-213ENST00000541953 RAB27AP51159 221 aa17.31■□□□□ 0.36
CLSTN3-213ENST00000541953 CLCN4P51793 760 aa17.31■□□□□ 0.36
CLSTN3-213ENST00000541953 SPIRE1Q08AE8 756 aa17.31■□□□□ 0.36
CLSTN3-213ENST00000541953 LAMTOR4Q0VGL1 99 aa17.31■□□□□ 0.36
CLSTN3-213ENST00000541953 SCRN1Q12765 414 aa17.31■□□□□ 0.36
CLSTN3-213ENST00000541953 ASCL5Q7RTU5 278 aa17.31■□□□□ 0.36
CLSTN3-213ENST00000541953 MRPL10Q7Z7H8 261 aaKnown RBP17.31■□□□□ 0.36
CLSTN3-213ENST00000541953 GPR149Q86SP6 731 aa17.31■□□□□ 0.36
CLSTN3-213ENST00000541953 UBALD2Q8IYN6 164 aa17.31■□□□□ 0.36
CLSTN3-213ENST00000541953 ZNF274Q96GC6 653 aaPredicted RBP17.31■□□□□ 0.36
CLSTN3-213ENST00000541953 CEP170P1Q96L14 293 aa17.31■□□□□ 0.36
CLSTN3-213ENST00000541953 LXNQ9BS40 222 aa17.31■□□□□ 0.36
CLSTN3-213ENST00000541953 PHF20Q9BVI0 1012 aa17.31■□□□□ 0.36
CLSTN3-213ENST00000541953 EIF2AQ9BY44 585 aaKnown RBP17.31■□□□□ 0.36
CLSTN3-213ENST00000541953 C22orf23Q9BZE7 217 aa17.31■□□□□ 0.36
CLSTN3-213ENST00000541953 RSAD1Q9HA92 442 aa17.31■□□□□ 0.36
CLSTN3-213ENST00000541953 XPNPEP1Q9NQW7 623 aa17.31■□□□□ 0.36
CLSTN3-213ENST00000541953 NRP1O14786 923 aa17.3■□□□□ 0.36
CLSTN3-213ENST00000541953 CDC42EP1Q00587 391 aa17.3■□□□□ 0.36
CLSTN3-213ENST00000541953 EMC2Q15006 297 aa17.3■□□□□ 0.36
CLSTN3-213ENST00000541953 KRT25Q7Z3Z0 450 aa17.3■□□□□ 0.36
CLSTN3-213ENST00000541953 CABP7Q86V35 215 aa17.3■□□□□ 0.36
CLSTN3-213ENST00000541953 DYDC2Q96IM9 177 aa17.3■□□□□ 0.36
CLSTN3-213ENST00000541953 INO80BQ9C086 356 aaPredicted RBP17.3■□□□□ 0.36
CLSTN3-213ENST00000541953 MIOSQ9NXC5 875 aa17.3■□□□□ 0.36
CLSTN3-213ENST00000541953 PRG3Q9Y2Y8 225 aaPredicted RBP17.3■□□□□ 0.36
CLSTN3-213ENST00000541953 HES2Q9Y543 173 aa17.3■□□□□ 0.36
CLSTN3-213ENST00000541953 CYP46A1Q9Y6A2 500 aa17.3■□□□□ 0.36
CLSTN3-213ENST00000541953 TDRD15B5MCY1 1934 aaKnown RBP17.29■□□□□ 0.36
CLSTN3-213ENST00000541953 DMXL1Q9Y485 3027 aa17.29■□□□□ 0.36
CLSTN3-213ENST00000541953 WNT7AO00755 349 aa17.29■□□□□ 0.36
CLSTN3-213ENST00000541953 C2CD2LO14523 706 aa17.29■□□□□ 0.36
CLSTN3-213ENST00000541953 CPLX1O14810 134 aa17.29■□□□□ 0.36
CLSTN3-213ENST00000541953 ST18O60284 1047 aa17.29■□□□□ 0.36
CLSTN3-213ENST00000541953 REC8O95072 547 aa17.29■□□□□ 0.36
CLSTN3-213ENST00000541953 CTDNEP1O95476 244 aa17.29■□□□□ 0.36
CLSTN3-213ENST00000541953 EFEMP2O95967 443 aa17.29■□□□□ 0.36
CLSTN3-213ENST00000541953 SKIP12755 728 aa17.29■□□□□ 0.36
CLSTN3-213ENST00000541953 CYP4A11Q02928 519 aa17.29■□□□□ 0.36
CLSTN3-213ENST00000541953 CTTNQ14247 550 aaKnown RBP17.29■□□□□ 0.36
CLSTN3-213ENST00000541953 ATAT1Q5SQI0 421 aa17.29■□□□□ 0.36
CLSTN3-213ENST00000541953 PIK3AP1Q6ZUJ8 805 aa17.29■□□□□ 0.36
CLSTN3-213ENST00000541953 RNF149Q8NC42 400 aa17.29■□□□□ 0.36
CLSTN3-213ENST00000541953 CPB2Q96IY4 423 aa17.29■□□□□ 0.36
CLSTN3-213ENST00000541953 B3GALT6Q96L58 329 aa17.29■□□□□ 0.36
CLSTN3-213ENST00000541953 SLKQ9H2G2 1235 aaPredicted RBP17.29■□□□□ 0.36
CLSTN3-213ENST00000541953 SFXN1Q9H9B4 322 aa17.29■□□□□ 0.36
CLSTN3-213ENST00000541953 USTQ9Y2C2 406 aa17.29■□□□□ 0.36
CLSTN3-213ENST00000541953 DOCK8Q8NF50 2099 aa17.28■□□□□ 0.36
CLSTN3-213ENST00000541953 DNAH14Q0VDD8 3507 aa17.28■□□□□ 0.36
CLSTN3-213ENST00000541953 PI15O43692 258 aa17.28■□□□□ 0.36
CLSTN3-213ENST00000541953 NARSO43776 548 aaKnown RBP17.28■□□□□ 0.36
CLSTN3-213ENST00000541953 TSPAN1O60635 241 aa17.28■□□□□ 0.36
CLSTN3-213ENST00000541953 P4HBP07237 508 aaKnown RBP17.28■□□□□ 0.36
CLSTN3-213ENST00000541953 NPR3P17342 541 aa17.28■□□□□ 0.36
CLSTN3-213ENST00000541953 KLRC2P26717 231 aa17.28■□□□□ 0.36
CLSTN3-213ENST00000541953 YWHABP31946 246 aaKnown RBP17.28■□□□□ 0.36
CLSTN3-213ENST00000541953 NCAPH2Q6IBW4 605 aa17.28■□□□□ 0.36
CLSTN3-213ENST00000541953 POTEGQ6S5H5 508 aa17.28■□□□□ 0.36
CLSTN3-213ENST00000541953 NEK8Q86SG6 692 aa17.28■□□□□ 0.36
CLSTN3-213ENST00000541953 FERMT3Q86UX7 667 aa17.28■□□□□ 0.36
CLSTN3-213ENST00000541953 RNF168Q8IYW5 571 aaPredicted RBP17.28■□□□□ 0.36
CLSTN3-213ENST00000541953 URGCPQ8TCY9 931 aa17.28■□□□□ 0.36
CLSTN3-213ENST00000541953 ASAP3Q8TDY4 903 aa17.28■□□□□ 0.36
CLSTN3-213ENST00000541953 PSPC1Q8WXF1 523 aaKnown RBP17.28■□□□□ 0.36
CLSTN3-213ENST00000541953 SLC7A3Q8WY07 619 aa17.28■□□□□ 0.36
CLSTN3-213ENST00000541953 PGBD4Q96DM1 585 aa17.28■□□□□ 0.36
CLSTN3-213ENST00000541953 ZFP42Q96MM3 310 aa17.28■□□□□ 0.36
CLSTN3-213ENST00000541953 GAD1Q99259 594 aa17.28■□□□□ 0.36
CLSTN3-213ENST00000541953 CACNG4Q9UBN1 327 aa17.28■□□□□ 0.36
CLSTN3-213ENST00000541953 IPPQ9Y573 584 aa17.28■□□□□ 0.36
CLSTN3-213ENST00000541953 COL4A3Q01955 1670 aa17.27■□□□□ 0.36
CLSTN3-213ENST00000541953 A0A087WWV3 80 aa17.27■□□□□ 0.36
CLSTN3-213ENST00000541953 CCDC194A0A1B0GVG4 234 aa17.27■□□□□ 0.36
CLSTN3-213ENST00000541953 CCNT1O60563 726 aaKnown RBP17.27■□□□□ 0.36
CLSTN3-213ENST00000541953 RFPL2O75678 378 aa17.27■□□□□ 0.36
CLSTN3-213ENST00000541953 NCLP19338 710 aaKnown RBP17.27■□□□□ 0.36
CLSTN3-213ENST00000541953 MLH1P40692 756 aa17.27■□□□□ 0.36
CLSTN3-213ENST00000541953 SCNN1GP51170 649 aa17.27■□□□□ 0.36
CLSTN3-213ENST00000541953 NR5A1Q13285 461 aa17.27■□□□□ 0.36
CLSTN3-213ENST00000541953 GIT2Q14161 759 aa17.27■□□□□ 0.36
CLSTN3-213ENST00000541953 EPHA7Q15375 998 aa17.27■□□□□ 0.36
CLSTN3-213ENST00000541953 AMHR2Q16671 573 aa17.27■□□□□ 0.36
CLSTN3-213ENST00000541953 ASTLQ6HA08 431 aaPredicted RBP17.27■□□□□ 0.36
CLSTN3-213ENST00000541953 PPP4R3AQ6IN85 833 aa17.27■□□□□ 0.36
CLSTN3-213ENST00000541953 GALNT17Q6IS24 598 aa17.27■□□□□ 0.36
CLSTN3-213ENST00000541953 CCDC149Q6ZUS6 474 aa17.27■□□□□ 0.36
CLSTN3-213ENST00000541953 SRGAP1Q7Z6B7 1085 aa17.27■□□□□ 0.36
CLSTN3-213ENST00000541953 CDR2LQ86X02 465 aaPredicted RBP17.27■□□□□ 0.36
CLSTN3-213ENST00000541953 C4orf19Q8IY42 314 aa17.27■□□□□ 0.36
CLSTN3-213ENST00000541953 COLGALT2Q8IYK4 626 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms