RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 HYAL1Q12794 435 aa22.83■■□□□ 1.25
VPS28-206ENST00000526734 AMHR2Q16671 573 aa22.83■■□□□ 1.25
VPS28-206ENST00000526734 CTC1Q2NKJ3 1217 aa22.83■■□□□ 1.25
VPS28-206ENST00000526734 CDCA3Q99618 268 aaPredicted RBP22.83■■□□□ 1.25
VPS28-206ENST00000526734 NT5C3AQ9H0P0 336 aa22.83■■□□□ 1.25
VPS28-206ENST00000526734 RSAD1Q9HA92 442 aa22.83■■□□□ 1.25
VPS28-206ENST00000526734 GPRC5CQ9NQ84 441 aa22.83■■□□□ 1.25
VPS28-206ENST00000526734 ZMYM2Q9UBW7 1377 aa22.82■■□□□ 1.24
VPS28-206ENST00000526734 OFD1O75665 1012 aa22.82■■□□□ 1.24
VPS28-206ENST00000526734 ECM1Q16610 540 aa22.82■■□□□ 1.24
VPS28-206ENST00000526734 FAM187BQ17R55 369 aa22.82■■□□□ 1.24
VPS28-206ENST00000526734 HYIQ5T013 277 aa22.82■■□□□ 1.24
VPS28-206ENST00000526734 MAEAQ7L5Y9 396 aa22.82■■□□□ 1.24
VPS28-206ENST00000526734 SLC39A11Q8N1S5 342 aa22.82■■□□□ 1.24
VPS28-206ENST00000526734 LPPQ93052 612 aa22.82■■□□□ 1.24
VPS28-206ENST00000526734 IFT74Q96LB3 600 aa22.82■■□□□ 1.24
VPS28-206ENST00000526734 AK8Q96MA6 479 aa22.82■■□□□ 1.24
VPS28-206ENST00000526734 NGRNQ9NPE2 291 aaKnown RBP22.82■■□□□ 1.24
VPS28-206ENST00000526734 CLDND1Q9NY35 253 aa22.82■■□□□ 1.24
VPS28-206ENST00000526734 STK39Q9UEW8 545 aa22.82■■□□□ 1.24
VPS28-206ENST00000526734 TTC28Q96AY4 2481 aa22.82■■□□□ 1.24
VPS28-206ENST00000526734 K7ELQ4 463 aaPredicted RBP22.81■■□□□ 1.24
VPS28-206ENST00000526734 TNFRSF10AO00220 468 aa22.81■■□□□ 1.24
VPS28-206ENST00000526734 FSCN2O14926 492 aa22.81■■□□□ 1.24
VPS28-206ENST00000526734 ITGA4P13612 1032 aa22.81■■□□□ 1.24
VPS28-206ENST00000526734 ARF4P18085 180 aaPredicted RBP22.81■■□□□ 1.24
VPS28-206ENST00000526734 RNASELQ05823 741 aaKnown RBP22.81■■□□□ 1.24
VPS28-206ENST00000526734 BMS1Q14692 1282 aaKnown RBP22.81■■□□□ 1.24
VPS28-206ENST00000526734 IL17AQ16552 155 aa22.81■■□□□ 1.24
VPS28-206ENST00000526734 SLC27A1Q6PCB7 646 aa22.81■■□□□ 1.24
VPS28-206ENST00000526734 AGMOQ6ZNB7 445 aa22.81■■□□□ 1.24
VPS28-206ENST00000526734 DEPTORQ8TB45 409 aa22.81■■□□□ 1.24
VPS28-206ENST00000526734 MICAL1Q8TDZ2 1067 aa22.81■■□□□ 1.24
VPS28-206ENST00000526734 TIPINQ9BVW5 301 aa22.81■■□□□ 1.24
VPS28-206ENST00000526734 TRIM6Q9C030 488 aaPredicted RBP22.81■■□□□ 1.24
VPS28-206ENST00000526734 TBC1D13Q9NVG8 400 aa22.81■■□□□ 1.24
VPS28-206ENST00000526734 PHLPP2Q6ZVD8 1323 aa22.81■■□□□ 1.24
VPS28-206ENST00000526734 VPS37CA5D8V6 355 aaPredicted RBP22.8■■□□□ 1.24
VPS28-206ENST00000526734 INPPL1O15357 1258 aa22.8■■□□□ 1.24
VPS28-206ENST00000526734 IRS1P35568 1242 aa22.8■■□□□ 1.24
VPS28-206ENST00000526734 EFNA5P52803 228 aa22.8■■□□□ 1.24
VPS28-206ENST00000526734 BCAR1P56945 870 aa22.8■■□□□ 1.24
VPS28-206ENST00000526734 MAPK6Q16659 721 aa22.8■■□□□ 1.24
VPS28-206ENST00000526734 EFHBQ8N7U6 833 aa22.8■■□□□ 1.24
VPS28-206ENST00000526734 TMEM169Q96HH4 297 aa22.8■■□□□ 1.24
VPS28-206ENST00000526734 FZD8Q9H461 694 aa22.8■■□□□ 1.24
VPS28-206ENST00000526734 INPP5FQ9Y2H2 1132 aa22.8■■□□□ 1.24
VPS28-206ENST00000526734 IPPQ9Y573 584 aa22.8■■□□□ 1.24
VPS28-206ENST00000526734 A0A1B0GUA9 196 aa22.79■■□□□ 1.24
VPS28-206ENST00000526734 VWA3AA6NCI4 1184 aa22.79■■□□□ 1.24
VPS28-206ENST00000526734 PP2D1A8MPX8 630 aa22.79■■□□□ 1.24
VPS28-206ENST00000526734 ZC3H11AO75152 810 aaKnown RBP eCLIP22.79■■□□□ 1.247e-6■■■■■ 33.7
VPS28-206ENST00000526734 EP400NLQ6ZTU2 488 aa22.79■■□□□ 1.24
VPS28-206ENST00000526734 SMG8Q8ND04 991 aaKnown RBP22.79■■□□□ 1.24
VPS28-206ENST00000526734 CPB2Q96IY4 423 aa22.79■■□□□ 1.24
VPS28-206ENST00000526734 CDK5RAP3Q96JB5 506 aa22.79■■□□□ 1.24
VPS28-206ENST00000526734 DRC1Q96MC2 740 aa22.79■■□□□ 1.24
VPS28-206ENST00000526734 TMEM175Q9BSA9 504 aa22.79■■□□□ 1.24
VPS28-206ENST00000526734 MMTAG2Q9BU76 263 aaKnown RBP22.79■■□□□ 1.24
VPS28-206ENST00000526734 BRWD1Q9NSI6 2320 aa22.79■■□□□ 1.24
VPS28-206ENST00000526734 MEIS3P2A8K0S8 358 aa22.78■■□□□ 1.24
VPS28-206ENST00000526734 N4BP3O15049 544 aa22.78■■□□□ 1.24
VPS28-206ENST00000526734 CSPG5O95196 566 aa22.78■■□□□ 1.24
VPS28-206ENST00000526734 ADAM15Q13444 863 aa22.78■■□□□ 1.24
VPS28-206ENST00000526734 LONRF3Q496Y0 759 aa22.78■■□□□ 1.24
VPS28-206ENST00000526734 PTCRAQ6ISU1 281 aaPredicted RBP22.78■■□□□ 1.24
VPS28-206ENST00000526734 GADD45GIP1Q8TAE8 222 aaPredicted RBP22.78■■□□□ 1.24
VPS28-206ENST00000526734 BSNDQ8WZ55 320 aa22.78■■□□□ 1.24
VPS28-206ENST00000526734 SNX21Q969T3 373 aa22.78■■□□□ 1.24
VPS28-206ENST00000526734 TCF25Q9BQ70 676 aa22.78■■□□□ 1.24
VPS28-206ENST00000526734 EIF2AQ9BY44 585 aaKnown RBP22.78■■□□□ 1.24
VPS28-206ENST00000526734 NRDE2Q9H7Z3 1164 aa22.78■■□□□ 1.24
VPS28-206ENST00000526734 TLE6Q9H808 572 aa22.78■■□□□ 1.24
VPS28-206ENST00000526734 C17orf75Q9HAS0 396 aa22.78■■□□□ 1.24
VPS28-206ENST00000526734 ENTPD7Q9NQZ7 604 aa22.78■■□□□ 1.24
VPS28-206ENST00000526734 KCND2Q9NZV8 630 aa22.78■■□□□ 1.24
VPS28-206ENST00000526734 KCNG1Q9UIX4 513 aa22.78■■□□□ 1.24
VPS28-206ENST00000526734 GIT1Q9Y2X7 761 aa22.78■■□□□ 1.24
VPS28-206ENST00000526734 GTF3C3Q9Y5Q9 886 aa22.78■■□□□ 1.24
VPS28-206ENST00000526734 PLXNA4Q9HCM2 1894 aa22.77■■□□□ 1.24
VPS28-206ENST00000526734 ATG2AQ2TAZ0 1938 aa22.77■■□□□ 1.24
VPS28-206ENST00000526734 E9PMD0 336 aa22.77■■□□□ 1.24
VPS28-206ENST00000526734 B4GALT5O43286 388 aa22.77■■□□□ 1.24
VPS28-206ENST00000526734 SRGAP2BP0DMP2 458 aa22.77■■□□□ 1.24
VPS28-206ENST00000526734 PBX3P40426 434 aa22.77■■□□□ 1.24
VPS28-206ENST00000526734 NRIP1P48552 1158 aa22.77■■□□□ 1.24
VPS28-206ENST00000526734 ERVFC1P60507 584 aa22.77■■□□□ 1.24
VPS28-206ENST00000526734 ADGRD2Q7Z7M1 963 aa22.77■■□□□ 1.24
VPS28-206ENST00000526734 FAM193BQ96PV7 902 aaPredicted RBP22.77■■□□□ 1.24
VPS28-206ENST00000526734 CCDC113Q9H0I3 377 aa22.77■■□□□ 1.24
VPS28-206ENST00000526734 IGFLR1Q9H665 355 aa22.77■■□□□ 1.24
VPS28-206ENST00000526734 GRXCR2A6NFK2 248 aa22.76■■□□□ 1.23
VPS28-206ENST00000526734 H3BQ06 376 aaPredicted RBP22.76■■□□□ 1.23
VPS28-206ENST00000526734 ACKR2O00590 384 aa22.76■■□□□ 1.23
VPS28-206ENST00000526734 PRKCBP05771 671 aa22.76■■□□□ 1.23
VPS28-206ENST00000526734 GALTP07902 379 aa22.76■■□□□ 1.23
VPS28-206ENST00000526734 SYT1P21579 422 aa22.76■■□□□ 1.23
VPS28-206ENST00000526734 GUCY2CP25092 1073 aa22.76■■□□□ 1.23
VPS28-206ENST00000526734 CDC25AP30304 524 aa22.76■■□□□ 1.23
VPS28-206ENST00000526734 LONP1P36776 959 aaKnown RBP22.76■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms