RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 SLC11A1P49279 550 aa9.23□□□□□ -0.93
USP39-216ENST00000490193 JAK3P52333 1124 aa9.23□□□□□ -0.93
USP39-216ENST00000490193 DRP2Q13474 957 aa9.23□□□□□ -0.93
USP39-216ENST00000490193 UGCGQ16739 394 aa9.23□□□□□ -0.93
USP39-216ENST00000490193 LETM2Q2VYF4 491 aa9.23□□□□□ -0.93
USP39-216ENST00000490193 TSGA10IPQ3SY00 556 aa9.23□□□□□ -0.93
USP39-216ENST00000490193 RNF20Q5VTR2 975 aa9.23□□□□□ -0.93
USP39-216ENST00000490193 DHX32Q7L7V1 743 aaKnown RBP9.23□□□□□ -0.93
USP39-216ENST00000490193 ZNF410Q86VK4 478 aa9.23□□□□□ -0.93
USP39-216ENST00000490193 RDM1Q8NG50 284 aa9.23□□□□□ -0.93
USP39-216ENST00000490193 PTCD2Q8WV60 388 aaKnown RBP9.23□□□□□ -0.93
USP39-216ENST00000490193 SLC5A5Q92911 643 aa9.23□□□□□ -0.93
USP39-216ENST00000490193 ZNF668Q96K58 619 aaPredicted RBP9.23□□□□□ -0.93
USP39-216ENST00000490193 SCLT1Q96NL6 688 aa9.23□□□□□ -0.93
USP39-216ENST00000490193 KLHL5Q96PQ7 755 aa9.23□□□□□ -0.93
USP39-216ENST00000490193 EMILIN2Q9BXX0 1053 aa9.23□□□□□ -0.93
USP39-216ENST00000490193 NIFKQ9BYG3 293 aaKnown RBP9.23□□□□□ -0.93
USP39-216ENST00000490193 INO80BQ9C086 356 aaPredicted RBP9.23□□□□□ -0.93
USP39-216ENST00000490193 C6orf50Q9HD87 102 aa9.23□□□□□ -0.93
USP39-216ENST00000490193 WNT16Q9UBV4 365 aa9.23□□□□□ -0.93
USP39-216ENST00000490193 DNAJB4Q9UDY4 337 aa9.23□□□□□ -0.93
USP39-216ENST00000490193 SAMM50Q9Y512 469 aa9.23□□□□□ -0.93
USP39-216ENST00000490193 OTOGLQ3ZCN5 2332 aa9.22□□□□□ -0.93
USP39-216ENST00000490193 A0A087WZ62 844 aa9.22□□□□□ -0.93
USP39-216ENST00000490193 KLF18A0A0U1RQI7 1052 aa9.22□□□□□ -0.93
USP39-216ENST00000490193 CCDC196A0A1B0GTZ2 297 aa9.22□□□□□ -0.93
USP39-216ENST00000490193 MED19A0JLT2 244 aaPredicted RBP9.22□□□□□ -0.93
USP39-216ENST00000490193 MEIS3P2A8K0S8 358 aa9.22□□□□□ -0.93
USP39-216ENST00000490193 MSH4O15457 936 aa9.22□□□□□ -0.93
USP39-216ENST00000490193 N4BP1O75113 896 aaKnown RBP9.22□□□□□ -0.93
USP39-216ENST00000490193 CSDE1O75534 798 aaKnown RBP9.22□□□□□ -0.93
USP39-216ENST00000490193 STBD1O95210 358 aa9.22□□□□□ -0.93
USP39-216ENST00000490193 C1RP00736 705 aa9.22□□□□□ -0.93
USP39-216ENST00000490193 LMNAP02545 664 aaKnown RBP9.22□□□□□ -0.93
USP39-216ENST00000490193 CNPP09543 421 aaKnown RBP9.22□□□□□ -0.93
USP39-216ENST00000490193 GNA11P29992 359 aa9.22□□□□□ -0.93
USP39-216ENST00000490193 DNM2P50570 870 aa9.22□□□□□ -0.93
USP39-216ENST00000490193 RNASELQ05823 741 aaKnown RBP9.22□□□□□ -0.93
USP39-216ENST00000490193 XKR3Q5GH77 459 aa9.22□□□□□ -0.93
USP39-216ENST00000490193 TWF2Q6IBS0 349 aaKnown RBP9.22□□□□□ -0.93
USP39-216ENST00000490193 B3GNT9Q6UX72 402 aa9.22□□□□□ -0.93
USP39-216ENST00000490193 ZNF280BQ86YH2 543 aa9.22□□□□□ -0.93
USP39-216ENST00000490193 SIX5Q8N196 739 aa9.22□□□□□ -0.93
USP39-216ENST00000490193 LPPQ93052 612 aa9.22□□□□□ -0.93
USP39-216ENST00000490193 NXPE3Q969Y0 559 aa9.22□□□□□ -0.93
USP39-216ENST00000490193 FDXACB1Q9BRP7 624 aaPredicted RBP9.22□□□□□ -0.93
USP39-216ENST00000490193 TMEM175Q9BSA9 504 aa9.22□□□□□ -0.93
USP39-216ENST00000490193 ANO2Q9NQ90 1003 aa9.22□□□□□ -0.93
USP39-216ENST00000490193 EPS15L1Q9UBC2 864 aa9.22□□□□□ -0.93
USP39-216ENST00000490193 FBXL21Q9UKT6 434 aa9.22□□□□□ -0.93
USP39-216ENST00000490193 PIN4Q9Y237 131 aaKnown RBP9.22□□□□□ -0.93
USP39-216ENST00000490193 STK24Q9Y6E0 443 aa9.22□□□□□ -0.93
USP39-216ENST00000490193 TDRD15B5MCY1 1934 aaKnown RBP9.21□□□□□ -0.93
USP39-216ENST00000490193 KRBA1A5PL33 1030 aa9.21□□□□□ -0.94
USP39-216ENST00000490193 PRPF3O43395 683 aaKnown RBP9.21□□□□□ -0.94
USP39-216ENST00000490193 GAS7O60861 476 aa9.21□□□□□ -0.94
USP39-216ENST00000490193 MAFO75444 373 aaPredicted RBP9.21□□□□□ -0.94
USP39-216ENST00000490193 PSMD10O75832 226 aa9.21□□□□□ -0.94
USP39-216ENST00000490193 DDHD2O94830 711 aa9.21□□□□□ -0.94
USP39-216ENST00000490193 EFEMP2O95967 443 aa9.21□□□□□ -0.94
USP39-216ENST00000490193 KLRC2P26717 231 aa9.21□□□□□ -0.94
USP39-216ENST00000490193 ADD1P35611 737 aaKnown RBP9.21□□□□□ -0.94
USP39-216ENST00000490193 USP11P51784 963 aa9.21□□□□□ -0.94
USP39-216ENST00000490193 NONOQ15233 471 aaKnown RBP eCLIP9.21□□□□□ -0.94
USP39-216ENST00000490193 LRCH2Q5VUJ6 765 aa9.21□□□□□ -0.94
USP39-216ENST00000490193 DMRTA1Q5VZB9 504 aa9.21□□□□□ -0.94
USP39-216ENST00000490193 PHLDB3Q6NSJ2 640 aa9.21□□□□□ -0.94
USP39-216ENST00000490193 AGMOQ6ZNB7 445 aa9.21□□□□□ -0.94
USP39-216ENST00000490193 MRPL10Q7Z7H8 261 aaKnown RBP9.21□□□□□ -0.94
USP39-216ENST00000490193 RNF168Q8IYW5 571 aaPredicted RBP9.21□□□□□ -0.94
USP39-216ENST00000490193 BICD2Q8TD16 824 aa9.21□□□□□ -0.94
USP39-216ENST00000490193 HDAC7Q8WUI4 952 aa9.21□□□□□ -0.94
USP39-216ENST00000490193 PGBD4Q96DM1 585 aa9.21□□□□□ -0.94
USP39-216ENST00000490193 TCEANC2Q96MN5 208 aa9.21□□□□□ -0.94
USP39-216ENST00000490193 TEKT3Q9BXF9 490 aa9.21□□□□□ -0.94
USP39-216ENST00000490193 UNC45AQ9H3U1 944 aa9.21□□□□□ -0.94
USP39-216ENST00000490193 WDR6Q9NNW5 1121 aaKnown RBP9.21□□□□□ -0.94
USP39-216ENST00000490193 MRPL17Q9NRX2 175 aaKnown RBP9.21□□□□□ -0.94
USP39-216ENST00000490193 AGPAT5Q9NUQ2 364 aa9.21□□□□□ -0.94
USP39-216ENST00000490193 DLGAP2Q9P1A6 1054 aa9.21□□□□□ -0.94
USP39-216ENST00000490193 DPP7Q9UHL4 492 aa9.21□□□□□ -0.94
USP39-216ENST00000490193 INPP5FQ9Y2H2 1132 aa9.21□□□□□ -0.94
USP39-216ENST00000490193 CLUHO75153 1309 aa9.21□□□□□ -0.94
USP39-216ENST00000490193 CNTNAP2Q9UHC6 1331 aa9.21□□□□□ -0.94
USP39-216ENST00000490193 ARID2Q68CP9 1835 aa9.21□□□□□ -0.94
USP39-216ENST00000490193 PATJQ8NI35 1801 aa9.21□□□□□ -0.94
USP39-216ENST00000490193 MIA3Q5JRA6 1907 aa9.21□□□□□ -0.94
USP39-216ENST00000490193 CEP250Q9BV73 2442 aa9.21□□□□□ -0.94
USP39-216ENST00000490193 ZFHX4Q86UP3 3567 aa9.2□□□□□ -0.94
USP39-216ENST00000490193 NRP1O14786 923 aa9.2□□□□□ -0.94
USP39-216ENST00000490193 INPPL1O15357 1258 aa9.2□□□□□ -0.94
USP39-216ENST00000490193 NARSO43776 548 aaKnown RBP9.2□□□□□ -0.94
USP39-216ENST00000490193 SOD2P04179 222 aa9.2□□□□□ -0.94
USP39-216ENST00000490193 ALDH2P05091 517 aa9.2□□□□□ -0.94
USP39-216ENST00000490193 ADH1AP07327 375 aa9.2□□□□□ -0.94
USP39-216ENST00000490193 HMGB1P09429 215 aaKnown RBP9.2□□□□□ -0.94
USP39-216ENST00000490193 SRFP11831 508 aa9.2□□□□□ -0.94
USP39-216ENST00000490193 KRT32Q14532 448 aa9.2□□□□□ -0.94
USP39-216ENST00000490193 ADCK5Q3MIX3 580 aa9.2□□□□□ -0.94
USP39-216ENST00000490193 MTERF2Q49AM1 385 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms