RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 SYCP3Q8IZU3 236 aa15.25■□□□□ 0.03
C9orf3-221ENST00000489562 GLIS3Q8NEA6 775 aa15.25■□□□□ 0.03
C9orf3-221ENST00000489562 GOLGA5Q8TBA6 731 aa15.25■□□□□ 0.03
C9orf3-221ENST00000489562 ZNF668Q96K58 619 aaPredicted RBP15.25■□□□□ 0.03
C9orf3-221ENST00000489562 FUCA2Q9BTY2 467 aa15.25■□□□□ 0.03
C9orf3-221ENST00000489562 MRPL4Q9BYD3 311 aaKnown RBP15.25■□□□□ 0.03
C9orf3-221ENST00000489562 NAT10Q9H0A0 1025 aaKnown RBP15.25■□□□□ 0.03
C9orf3-221ENST00000489562 GZF1Q9H116 711 aaPredicted RBP15.25■□□□□ 0.03
C9orf3-221ENST00000489562 CDHR5Q9HBB8 845 aa15.25■□□□□ 0.03
C9orf3-221ENST00000489562 CGNQ9P2M7 1197 aaKnown RBP15.25■□□□□ 0.03
C9orf3-221ENST00000489562 SCN5AQ14524 2016 aa15.25■□□□□ 0.03
C9orf3-221ENST00000489562 CNTNAP2Q9UHC6 1331 aa15.24■□□□□ 0.03
C9orf3-221ENST00000489562 BICDL2A1A5D9 508 aa15.24■□□□□ 0.03
C9orf3-221ENST00000489562 PPP1R3GB7ZBB8 358 aa15.24■□□□□ 0.03
C9orf3-221ENST00000489562 GPR182O15218 404 aa15.24■□□□□ 0.03
C9orf3-221ENST00000489562 RPS6KA5O75582 802 aa15.24■□□□□ 0.03
C9orf3-221ENST00000489562 ERCC5P28715 1186 aaPredicted RBP15.24■□□□□ 0.03
C9orf3-221ENST00000489562 AXLP30530 894 aa15.24■□□□□ 0.03
C9orf3-221ENST00000489562 ZNF445P59923 1031 aa15.24■□□□□ 0.03
C9orf3-221ENST00000489562 PRPF4BQ13523 1007 aaKnown RBP15.24■□□□□ 0.03
C9orf3-221ENST00000489562 FBXO47Q5MNV8 452 aa15.24■□□□□ 0.03
C9orf3-221ENST00000489562 LRSAM1Q6UWE0 723 aa15.24■□□□□ 0.03
C9orf3-221ENST00000489562 ZPBP2Q6X784 338 aa15.24■□□□□ 0.03
C9orf3-221ENST00000489562 TSHZ1Q6ZSZ6 1077 aa15.24■□□□□ 0.03
C9orf3-221ENST00000489562 HS2ST1Q7LGA3 356 aa15.24■□□□□ 0.03
C9orf3-221ENST00000489562 TAS1R3Q7RTX0 852 aa15.24■□□□□ 0.03
C9orf3-221ENST00000489562 CATSPER4Q7RTX7 472 aa15.24■□□□□ 0.03
C9orf3-221ENST00000489562 BICD1Q96G01 975 aa15.24■□□□□ 0.03
C9orf3-221ENST00000489562 GBP3Q9H0R5 595 aa15.24■□□□□ 0.03
C9orf3-221ENST00000489562 MINDY3Q9H8M7 445 aa15.24■□□□□ 0.03
C9orf3-221ENST00000489562 PRKAG2Q9UGJ0 569 aa15.24■□□□□ 0.03
C9orf3-221ENST00000489562 PDXKO00764 312 aa15.23■□□□□ 0.03
C9orf3-221ENST00000489562 HNRNPDLO14979 420 aaKnown RBP15.23■□□□□ 0.03
C9orf3-221ENST00000489562 IQCF3P0C7M6 154 aa15.23■□□□□ 0.03
C9orf3-221ENST00000489562 CCNE1P24864 410 aa15.23■□□□□ 0.03
C9orf3-221ENST00000489562 RFC2P35250 354 aa15.23■□□□□ 0.03
C9orf3-221ENST00000489562 LIG4P49917 911 aa15.23■□□□□ 0.03
C9orf3-221ENST00000489562 PAK1Q13153 545 aa15.23■□□□□ 0.03
C9orf3-221ENST00000489562 APBB1IPQ7Z5R6 666 aaPredicted RBP15.23■□□□□ 0.03
C9orf3-221ENST00000489562 NELFCDQ8IXH7 590 aa15.23■□□□□ 0.03
C9orf3-221ENST00000489562 TMEM40Q8WWA1 233 aa15.23■□□□□ 0.03
C9orf3-221ENST00000489562 CCDC51Q96ER9 411 aa15.23■□□□□ 0.03
C9orf3-221ENST00000489562 TSG101Q99816 390 aa15.23■□□□□ 0.03
C9orf3-221ENST00000489562 TYW1Q9NV66 732 aaKnown RBP15.23■□□□□ 0.03
C9orf3-221ENST00000489562 MAPK8IP1Q9UQF2 711 aa15.23■□□□□ 0.03
C9orf3-221ENST00000489562 LTBP2Q14767 1821 aa15.22■□□□□ 0.03
C9orf3-221ENST00000489562 CALUO43852 315 aaPredicted RBP15.22■□□□□ 0.03
C9orf3-221ENST00000489562 TIMP1P01033 207 aa15.22■□□□□ 0.03
C9orf3-221ENST00000489562 GHRP10912 638 aa15.22■□□□□ 0.03
C9orf3-221ENST00000489562 CD44P16070 742 aaKnown RBP15.22■□□□□ 0.03
C9orf3-221ENST00000489562 LRRC63Q05C16 580 aa15.22■□□□□ 0.03
C9orf3-221ENST00000489562 PAK2Q13177 524 aa15.22■□□□□ 0.03
C9orf3-221ENST00000489562 HSP90AA2PQ14568 343 aaPredicted RBP15.22■□□□□ 0.03
C9orf3-221ENST00000489562 LPIN1Q14693 890 aa15.22■□□□□ 0.03
C9orf3-221ENST00000489562 AMHR2Q16671 573 aa15.22■□□□□ 0.03
C9orf3-221ENST00000489562 TMEM132AQ24JP5 1023 aa15.22■□□□□ 0.03
C9orf3-221ENST00000489562 EDRF1Q3B7T1 1238 aa15.22■□□□□ 0.03
C9orf3-221ENST00000489562 SLFN12LQ6IEE8 588 aa15.22■□□□□ 0.03
C9orf3-221ENST00000489562 CENPPQ6IPU0 288 aa15.22■□□□□ 0.03
C9orf3-221ENST00000489562 KLHL10Q6JEL2 608 aa15.22■□□□□ 0.03
C9orf3-221ENST00000489562 FAM228AQ86W67 206 aa15.22■□□□□ 0.03
C9orf3-221ENST00000489562 NELFBQ8WX92 580 aa15.22■□□□□ 0.03
C9orf3-221ENST00000489562 P2RX5Q93086 422 aa15.22■□□□□ 0.03
C9orf3-221ENST00000489562 PPP1R12CQ9BZL4 782 aa15.22■□□□□ 0.03
C9orf3-221ENST00000489562 KCTD10Q9H3F6 313 aa15.22■□□□□ 0.03
C9orf3-221ENST00000489562 PRDM5Q9NQX1 630 aaPredicted RBP15.22■□□□□ 0.03
C9orf3-221ENST00000489562 CHST12Q9NRB3 414 aa15.22■□□□□ 0.03
C9orf3-221ENST00000489562 AGPAT5Q9NUQ2 364 aa15.22■□□□□ 0.03
C9orf3-221ENST00000489562 RWDD2AQ9UIY3 292 aa15.22■□□□□ 0.03
C9orf3-221ENST00000489562 TRAF3IP3Q9Y228 551 aa15.22■□□□□ 0.03
C9orf3-221ENST00000489562 NOC2LQ9Y3T9 749 aaKnown RBP15.22■□□□□ 0.03
C9orf3-221ENST00000489562 ZMYM2Q9UBW7 1377 aa15.22■□□□□ 0.03
C9orf3-221ENST00000489562 TET1Q8NFU7 2136 aa15.22■□□□□ 0.03
C9orf3-221ENST00000489562 CITO14578 2027 aa15.21■□□□□ 0.03
C9orf3-221ENST00000489562 N4BP3O15049 544 aa15.21■□□□□ 0.03
C9orf3-221ENST00000489562 KIAA0391O15091 583 aaKnown RBP15.21■□□□□ 0.03
C9orf3-221ENST00000489562 TSPAN1O60635 241 aa15.21■□□□□ 0.03
C9orf3-221ENST00000489562 TOM1L1O75674 476 aa15.21■□□□□ 0.03
C9orf3-221ENST00000489562 RAG1P15918 1043 aa15.21■□□□□ 0.03
C9orf3-221ENST00000489562 ARF4P18085 180 aaPredicted RBP15.21■□□□□ 0.03
C9orf3-221ENST00000489562 CYP2C18P33260 490 aa15.21■□□□□ 0.03
C9orf3-221ENST00000489562 HOXD13P35453 343 aa15.21■□□□□ 0.03
C9orf3-221ENST00000489562 KCNA1Q09470 495 aa15.21■□□□□ 0.03
C9orf3-221ENST00000489562 MYBPC2Q14324 1141 aa15.21■□□□□ 0.03
C9orf3-221ENST00000489562 NFIL3Q16649 462 aa15.21■□□□□ 0.03
C9orf3-221ENST00000489562 ANO6Q4KMQ2 910 aa15.21■□□□□ 0.03
C9orf3-221ENST00000489562 ATF7IP2Q5U623 682 aa15.21■□□□□ 0.03
C9orf3-221ENST00000489562 NOTUMQ6P988 496 aa15.21■□□□□ 0.03
C9orf3-221ENST00000489562 C12orf56Q8IXR9 622 aa15.21■□□□□ 0.03
C9orf3-221ENST00000489562 TMEM174Q8WUU8 243 aa15.21■□□□□ 0.03
C9orf3-221ENST00000489562 APBB2Q92870 758 aa15.21■□□□□ 0.03
C9orf3-221ENST00000489562 ACO2Q99798 780 aaKnown RBP15.21■□□□□ 0.03
C9orf3-221ENST00000489562 BPIFA3Q9BQP9 254 aa15.21■□□□□ 0.03
C9orf3-221ENST00000489562 ADPGKQ9BRR6 497 aa15.21■□□□□ 0.03
C9orf3-221ENST00000489562 TARS2Q9BW92 718 aaKnown RBP15.21■□□□□ 0.03
C9orf3-221ENST00000489562 WNT8AQ9H1J5 351 aa15.21■□□□□ 0.03
C9orf3-221ENST00000489562 DNAJC25Q9H1X3 360 aa15.21■□□□□ 0.03
C9orf3-221ENST00000489562 TSPY26PQ9H489 355 aa15.21■□□□□ 0.03
C9orf3-221ENST00000489562 ERVK-5Q9HDB9 667 aa15.21■□□□□ 0.03
C9orf3-221ENST00000489562 ST3GAL5Q9UNP4 418 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms