RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 ICAM1P05362 532 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 NBPF7P0C2Y1 421 aaPredicted RBP3.08□□□□□ -1.92
USP40-211ENST00000464956 UQCRFS1P1P0C7P4 283 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 ZNF853P0CG23 659 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 PSMC3P17980 439 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 COL8A1P27658 744 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 GDI1P31150 447 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 ZAP70P43403 619 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 DGKEP52429 567 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 TIMM10P62072 90 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 ADAM17P78536 824 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 NTHL1P78549 312 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 STXBP2Q15833 593 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 HSDL1Q3SXM5 330 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 CCDC157Q569K6 752 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 TTC39AQ5SRH9 613 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 CELF3Q5SZQ8 465 aaKnown RBP3.08□□□□□ -1.92
USP40-211ENST00000464956 FHL5Q5TD97 284 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 LYSMD4Q5XG99 296 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 INO80CQ6PI98 192 aaPredicted RBP3.08□□□□□ -1.92
USP40-211ENST00000464956 SLC30A10Q6XR72 485 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 MAMDC2Q7Z304 686 aaPredicted RBP3.08□□□□□ -1.92
USP40-211ENST00000464956 RALGPS2Q86X27 583 aaPredicted RBP3.08□□□□□ -1.92
USP40-211ENST00000464956 ERICH1Q86X53 443 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 MAP4K3Q8IVH8 894 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 NPAS3Q8IXF0 933 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 AMOTL1Q8IY63 956 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 TSPYL6Q8N831 410 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 EXD3Q8N9H8 876 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 OR2I1PQ8NGU4 316 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 DEPDC1BQ8WUY9 529 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 STAG1Q8WVM7 1258 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 KCNE4Q8WWG9 221 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 RSPH1Q8WYR4 309 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 SGPP1Q9BX95 441 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 PLA2G2FQ9BZM2 168 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 EPN3Q9H201 632 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 RNF39Q9H2S5 420 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 TMX1Q9H3N1 280 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 PRDM16Q9HAZ2 1276 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 FSCN3Q9NQT6 498 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 NYAP2Q9P242 653 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 TUBE1Q9UJT0 475 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 ITGB1BP2Q9UKP3 347 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 KCNH3Q9ULD8 1083 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 PHTF1Q9UMS5 762 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 POLIQ9UNA4 740 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 TRIM35Q9UPQ4 493 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 INVSQ9Y283 1065 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 TRPV2Q9Y5S1 764 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 CCDC171Q6TFL3 1326 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 IGSF9BQ9UPX0 1349 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 CELSR3Q9NYQ7 3312 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 KALRNO60229 2985 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 APC2O95996 2303 aa3.08□□□□□ -1.92
USP40-211ENST00000464956 CFAP46Q8IYW2 2715 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 GREB1Q4ZG55 1949 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 NAV3Q8IVL0 2385 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 ANO9A1A5B4 782 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 SLC38A8A6NNN8 435 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 GPR182O15218 404 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 KLK10O43240 276 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 TNFSF14O43557 240 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 MGEA5O60502 916 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 HNRNPA1P09651 372 aaKnown RBP eCLIP3.07□□□□□ -1.92
USP40-211ENST00000464956 SPATA31D3P0C874 917 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 HSPA5P11021 654 aaKnown RBP3.07□□□□□ -1.92
USP40-211ENST00000464956 SKIP12755 728 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 ITGB6P18564 788 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 RASA1P20936 1047 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 ARID4AP29374 1257 aaPredicted RBP3.07□□□□□ -1.92
USP40-211ENST00000464956 CTHP32929 405 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 CASRP41180 1078 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 CDK8P49336 464 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 RPS6P62753 249 aaKnown RBP3.07□□□□□ -1.92
USP40-211ENST00000464956 FAM189BP81408 668 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 PPFIA1Q13136 1202 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 CCINQ13939 588 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 PON2Q15165 354 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 KIZQ2M2Z5 673 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 TMEM266Q2M3C6 531 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 ZXDCQ2QGD7 858 aaPredicted RBP3.07□□□□□ -1.92
USP40-211ENST00000464956 PROX2Q3B8N5 592 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 PABPC1LQ4VXU2 614 aaKnown RBP3.07□□□□□ -1.92
USP40-211ENST00000464956 SPDYCQ5MJ68 293 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 PPP1R26Q5T8A7 1209 aaPredicted RBP3.07□□□□□ -1.92
USP40-211ENST00000464956 LIN9Q5TKA1 542 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 MYSM1Q5VVJ2 828 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 TANGO2Q6ICL3 276 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 KCNV1Q6PIU1 500 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 DHRS13Q6UX07 377 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 SPATA31D4Q6ZUB0 917 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 ARMCX6Q7L4S7 300 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 TMEM173Q86WV6 379 aaPredicted RBP3.07□□□□□ -1.92
USP40-211ENST00000464956 DHX40Q8IX18 779 aaKnown RBP3.07□□□□□ -1.92
USP40-211ENST00000464956 YAF2Q8IY57 180 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 SLC34A3Q8N130 599 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 LINC01465Q8N7H1 131 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 RNF169Q8NCN4 708 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 ITFG1Q8TB96 612 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms