RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 XXYLT1Q8NBI6 393 aa12.76□□□□□ -0.37
MSH6-204ENST00000445503 KAT5Q92993 513 aa12.76□□□□□ -0.37
MSH6-204ENST00000445503 CHD4Q14839 1912 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 MIF4GDA9UHW6 222 aaKnown RBP12.75□□□□□ -0.37
MSH6-204ENST00000445503 SUN1O94901 812 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 MAPK7Q13164 816 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 TMED2Q15363 201 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 CLUL1Q15846 466 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 CEP55Q53EZ4 464 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 LMBRD2Q68DH5 695 aaPredicted RBP12.75□□□□□ -0.37
MSH6-204ENST00000445503 CROCCP2Q86T23 111 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 PALB2Q86YC2 1186 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 RUNDC3BQ96NL0 473 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 CBWD1Q9BRT8 395 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 CARD9Q9H257 536 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 PABPC3Q9H361 631 aaKnown RBP12.75□□□□□ -0.37
MSH6-204ENST00000445503 CEP83Q9Y592 693 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 ROBO3Q96MS0 1386 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 TRAPPC3O43617 180 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 SGPL1O95470 568 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 ARP10275 920 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 SCTRP47872 440 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 SETDB1Q15047 1291 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 ZNF572Q7Z3I7 529 aaPredicted RBP12.75□□□□□ -0.37
MSH6-204ENST00000445503 KIF2BQ8N4N8 673 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 ATG4AQ8WYN0 398 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 FAM163AQ96GL9 167 aaPredicted RBP12.75□□□□□ -0.37
MSH6-204ENST00000445503 ERVK-5Q9HDB9 667 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 NYAP2Q9P242 653 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 MYH3P11055 1940 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 PHF2O75151 1096 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 GYS1P13807 737 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 DHX34Q14147 1143 aaKnown RBP12.75□□□□□ -0.37
MSH6-204ENST00000445503 DPH6Q7L8W6 267 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 CD302Q8IX05 232 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 SP8Q8IXZ3 490 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 ACER1Q8TDN7 264 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 IFT74Q96LB3 600 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 FBXO28Q9NVF7 368 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 KLHL14Q9P2G3 628 aa12.75□□□□□ -0.37
MSH6-204ENST00000445503 IGSF9BQ9UPX0 1349 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 A0A1B0GUA9 196 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 TBX3O15119 743 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 ALG3Q92685 438 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 FGFR1OP2Q9NVK5 253 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 ZNF148Q9UQR1 794 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 SLIT2O94813 1529 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 HNRNPDLO14979 420 aaKnown RBP12.74□□□□□ -0.37
MSH6-204ENST00000445503 PPIP5K2O43314 1243 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 CALCAP01258 141 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 BRAFP15056 766 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 HSPA6P17066 643 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 DLG4P78352 724 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 MYO1EQ12965 1108 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 KYNUQ16719 465 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 LRRC57Q8N9N7 239 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 HAUS1Q96CS2 278 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 KIFC3Q9BVG8 833 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 CXorf56Q9H5V9 222 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 GPRC5CQ9NQ84 441 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 PPP1R1BQ9UD71 204 aaPredicted RBP12.74□□□□□ -0.37
MSH6-204ENST00000445503 TTC7AQ9ULT0 858 aaPredicted RBP12.74□□□□□ -0.37
MSH6-204ENST00000445503 DIS3Q9Y2L1 958 aaKnown RBP12.74□□□□□ -0.37
MSH6-204ENST00000445503 BCL9LQ86UU0 1499 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 SNED1Q8TER0 1413 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 TMEM150BA6NC51 233 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 CCT8L1PA6NM43 557 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 TGFB1I1O43294 461 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 SLC8A1P32418 973 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 SREBF1P36956 1147 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 KRT17Q04695 432 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 C9orf72Q96LT7 481 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 POP1Q99575 1024 aaKnown RBP12.74□□□□□ -0.37
MSH6-204ENST00000445503 TMEM206Q9H813 350 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 EXOC7Q9UPT5 735 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 GAKO14976 1311 aa12.74□□□□□ -0.37
MSH6-204ENST00000445503 OPLAHO14841 1288 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 RAD17O75943 681 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 SLITRK3O94933 977 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 NSFP46459 744 aaKnown RBP12.73□□□□□ -0.37
MSH6-204ENST00000445503 PTENP60484 403 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 DLGAP5Q15398 846 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 ZNF720Q7Z2F6 126 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 HAUS6Q7Z4H7 955 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 SUGP1Q8IWZ8 645 aaKnown RBP12.73□□□□□ -0.37
MSH6-204ENST00000445503 PI4K2AQ9BTU6 479 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 ADAMTSL3P82987 1691 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 FSBPO95073 299 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 PRKCIP41743 596 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 RPL21P46778 160 aaKnown RBP12.73□□□□□ -0.37
MSH6-204ENST00000445503 ATP11AP98196 1134 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 ZBTB16Q05516 673 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 TRIM68Q6AZZ1 485 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 APOBEC3HQ6NTF7 200 aaKnown RBP12.73□□□□□ -0.37
MSH6-204ENST00000445503 ARHGEF19Q8IW93 802 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 TRIM7Q9C029 511 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 C1orf112Q9NSG2 853 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 KLHL11Q9NVR0 708 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 MMP10P09238 476 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 GABPAQ06546 454 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms