RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 USP20Q9Y2K6 914 aa17.32■□□□□ 0.36
SHQ1-202ENST00000444040 FAM170AA1A519 330 aa17.32■□□□□ 0.36
SHQ1-202ENST00000444040 H0YGN5 161 aa17.32■□□□□ 0.36
SHQ1-202ENST00000444040 TTI1O43156 1089 aa17.32■□□□□ 0.36
SHQ1-202ENST00000444040 DPEP1P16444 411 aa17.32■□□□□ 0.36
SHQ1-202ENST00000444040 SNRPFP62306 86 aaKnown RBP17.32■□□□□ 0.36
SHQ1-202ENST00000444040 TCEAL1Q15170 157 aa17.32■□□□□ 0.36
SHQ1-202ENST00000444040 KDM7AQ6ZMT4 941 aa17.32■□□□□ 0.36
SHQ1-202ENST00000444040 CCDC26Q8TAB7 109 aa17.32■□□□□ 0.36
SHQ1-202ENST00000444040 TIPINQ9BVW5 301 aa17.32■□□□□ 0.36
SHQ1-202ENST00000444040 TMEM117Q9H0C3 514 aa17.32■□□□□ 0.36
SHQ1-202ENST00000444040 NFS1Q9Y697 457 aa17.32■□□□□ 0.36
SHQ1-202ENST00000444040 TRIM66O15016 1216 aa17.31■□□□□ 0.36
SHQ1-202ENST00000444040 SLC16A4O15374 487 aa17.31■□□□□ 0.36
SHQ1-202ENST00000444040 PEX3P56589 373 aa17.31■□□□□ 0.36
SHQ1-202ENST00000444040 EN1Q05925 392 aaPredicted RBP17.31■□□□□ 0.36
SHQ1-202ENST00000444040 KCTD19Q17RG1 926 aaPredicted RBP17.31■□□□□ 0.36
SHQ1-202ENST00000444040 LRIG3Q6UXM1 1119 aa17.31■□□□□ 0.36
SHQ1-202ENST00000444040 RHOT2Q8IXI1 618 aa17.31■□□□□ 0.36
SHQ1-202ENST00000444040 SAMD3Q8N6K7 520 aa17.31■□□□□ 0.36
SHQ1-202ENST00000444040 KAT5Q92993 513 aa17.31■□□□□ 0.36
SHQ1-202ENST00000444040 CELF4Q9BZC1 486 aaKnown RBP17.31■□□□□ 0.36
SHQ1-202ENST00000444040 MYOZ2Q9NPC6 264 aa17.31■□□□□ 0.36
SHQ1-202ENST00000444040 A6NNZ2 444 aa17.31■□□□□ 0.36
SHQ1-202ENST00000444040 DAPK3O43293 454 aa17.31■□□□□ 0.36
SHQ1-202ENST00000444040 CCNE2O96020 404 aa17.31■□□□□ 0.36
SHQ1-202ENST00000444040 FLT3P36888 993 aa17.31■□□□□ 0.36
SHQ1-202ENST00000444040 TUBB8Q3ZCM7 444 aa17.31■□□□□ 0.36
SHQ1-202ENST00000444040 TTC19Q6DKK2 380 aaPredicted RBP17.31■□□□□ 0.36
SHQ1-202ENST00000444040 ATP6V1G3Q96LB4 118 aa17.31■□□□□ 0.36
SHQ1-202ENST00000444040 RNPC3Q96LT9 517 aaKnown RBP17.31■□□□□ 0.36
SHQ1-202ENST00000444040 ADRB2P07550 413 aa17.3■□□□□ 0.36
SHQ1-202ENST00000444040 PSMC5P62195 406 aa17.3■□□□□ 0.36
SHQ1-202ENST00000444040 ALG3Q92685 438 aa17.3■□□□□ 0.36
SHQ1-202ENST00000444040 LRRC45Q96CN5 670 aa17.3■□□□□ 0.36
SHQ1-202ENST00000444040 PDCD2LQ9BRP1 358 aa17.3■□□□□ 0.36
SHQ1-202ENST00000444040 ALG6Q9Y672 507 aa17.3■□□□□ 0.36
SHQ1-202ENST00000444040 FTLP02792 175 aaPredicted RBP17.3■□□□□ 0.36
SHQ1-202ENST00000444040 ADSSP30520 456 aa17.3■□□□□ 0.36
SHQ1-202ENST00000444040 PTENP60484 403 aa17.3■□□□□ 0.36
SHQ1-202ENST00000444040 BCAS4Q8TDM0 211 aa17.3■□□□□ 0.36
SHQ1-202ENST00000444040 TMBIM4Q9HC24 238 aa17.3■□□□□ 0.36
SHQ1-202ENST00000444040 RXRBP28702 533 aa17.29■□□□□ 0.36
SHQ1-202ENST00000444040 MXI1P50539 228 aa17.29■□□□□ 0.36
SHQ1-202ENST00000444040 ATP1A2P50993 1020 aa17.29■□□□□ 0.36
SHQ1-202ENST00000444040 PDCLQ13371 301 aa17.29■□□□□ 0.36
SHQ1-202ENST00000444040 CEP85LQ5SZL2 805 aa17.29■□□□□ 0.36
SHQ1-202ENST00000444040 RPUSD2Q8IZ73 545 aaKnown RBP17.29■□□□□ 0.36
SHQ1-202ENST00000444040 IWS1Q96ST2 819 aa17.29■□□□□ 0.36
SHQ1-202ENST00000444040 PCDHB18PQ96TA0 734 aa17.29■□□□□ 0.36
SHQ1-202ENST00000444040 MYCLP12524 364 aaPredicted RBP17.29■□□□□ 0.36
SHQ1-202ENST00000444040 CHRNB2P17787 502 aa17.29■□□□□ 0.36
SHQ1-202ENST00000444040 JAK3P52333 1124 aa17.29■□□□□ 0.36
SHQ1-202ENST00000444040 NAA35Q5VZE5 725 aa17.29■□□□□ 0.36
SHQ1-202ENST00000444040 PLA2G4FQ68DD2 849 aa17.29■□□□□ 0.36
SHQ1-202ENST00000444040 C11orf63Q6NUN7 778 aa17.29■□□□□ 0.36
SHQ1-202ENST00000444040 FAM71AQ8IYT1 594 aa17.29■□□□□ 0.36
SHQ1-202ENST00000444040 EPS8L1Q8TE68 723 aa17.29■□□□□ 0.36
SHQ1-202ENST00000444040 KREMEN1Q96MU8 473 aa17.29■□□□□ 0.36
SHQ1-202ENST00000444040 PXMP2Q9NR77 195 aa17.29■□□□□ 0.36
SHQ1-202ENST00000444040 ANKEF1Q9NU02 776 aa17.29■□□□□ 0.36
SHQ1-202ENST00000444040 NOCTQ9UK39 431 aaKnown RBP17.29■□□□□ 0.36
SHQ1-202ENST00000444040 GOLGA8IPA6NC78 632 aa17.29■□□□□ 0.36
SHQ1-202ENST00000444040 GOLGA8JA6NMD2 632 aa17.29■□□□□ 0.36
SHQ1-202ENST00000444040 WDR64B1ANS9 1081 aa17.29■□□□□ 0.36
SHQ1-202ENST00000444040 HMGB1P1B2RPK0 211 aaPredicted RBP17.29■□□□□ 0.36
SHQ1-202ENST00000444040 ANKRD63C9JTQ0 380 aa17.29■□□□□ 0.36
SHQ1-202ENST00000444040 SGPL1O95470 568 aa17.29■□□□□ 0.36
SHQ1-202ENST00000444040 VCAM1P19320 739 aa17.29■□□□□ 0.36
SHQ1-202ENST00000444040 TRMT1LQ7Z2T5 733 aaKnown RBP17.29■□□□□ 0.36
SHQ1-202ENST00000444040 CBWD2Q8IUF1 395 aa17.29■□□□□ 0.36
SHQ1-202ENST00000444040 TMEM161BQ8NDZ6 487 aa17.29■□□□□ 0.36
SHQ1-202ENST00000444040 RMDN3Q96TC7 470 aa17.29■□□□□ 0.36
SHQ1-202ENST00000444040 ERVK-5Q9HDB9 667 aa17.29■□□□□ 0.36
SHQ1-202ENST00000444040 PFASO15067 1338 aa17.29■□□□□ 0.36
SHQ1-202ENST00000444040 FER1L6Q2WGJ9 1857 aa17.28■□□□□ 0.36
SHQ1-202ENST00000444040 NR1D1P20393 614 aa17.28■□□□□ 0.36
SHQ1-202ENST00000444040 SFNP31947 248 aa17.28■□□□□ 0.36
SHQ1-202ENST00000444040 GPC5P78333 572 aa17.28■□□□□ 0.36
SHQ1-202ENST00000444040 ZNF211Q13398 564 aaPredicted RBP17.28■□□□□ 0.36
SHQ1-202ENST00000444040 PRPF4BQ13523 1007 aaKnown RBP17.28■□□□□ 0.36
SHQ1-202ENST00000444040 TBC1D10BQ4KMP7 808 aaPredicted RBP17.28■□□□□ 0.36
SHQ1-202ENST00000444040 XKR9Q5GH70 373 aa17.28■□□□□ 0.36
SHQ1-202ENST00000444040 FAM102BQ5T8I3 360 aa17.28■□□□□ 0.36
SHQ1-202ENST00000444040 NOP9Q86U38 636 aaKnown RBP17.28■□□□□ 0.36
SHQ1-202ENST00000444040 C10orf67Q8IYJ2 551 aa17.28■□□□□ 0.36
SHQ1-202ENST00000444040 SLC17A8Q8NDX2 589 aa17.28■□□□□ 0.36
SHQ1-202ENST00000444040 ATP8B4Q8TF62 1192 aa17.28■□□□□ 0.36
SHQ1-202ENST00000444040 TSPYL1Q9H0U9 437 aa17.28■□□□□ 0.36
SHQ1-202ENST00000444040 FAM114A2Q9NRY5 505 aa17.28■□□□□ 0.36
SHQ1-202ENST00000444040 CTTNBP2NLQ9P2B4 639 aa17.28■□□□□ 0.36
SHQ1-202ENST00000444040 TBX20Q9UMR3 447 aa17.28■□□□□ 0.36
SHQ1-202ENST00000444040 UTP11Q9Y3A2 253 aaKnown RBP17.28■□□□□ 0.36
SHQ1-202ENST00000444040 RTN2O75298 545 aa17.28■□□□□ 0.36
SHQ1-202ENST00000444040 EGFRP00533 1210 aa17.28■□□□□ 0.36
SHQ1-202ENST00000444040 CCT5P48643 541 aa17.28■□□□□ 0.36
SHQ1-202ENST00000444040 KRT76Q01546 638 aa17.28■□□□□ 0.36
SHQ1-202ENST00000444040 SNRNP35Q16560 246 aaKnown RBP17.28■□□□□ 0.36
SHQ1-202ENST00000444040 SKIDA1Q1XH10 827 aa17.28■□□□□ 0.36
SHQ1-202ENST00000444040 ZNF746Q6NUN9 644 aaPredicted RBP17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms