RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 TCP11X2Q5H9J9 407 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 SMC5Q8IY18 1101 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 ZFP42Q96MM3 310 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 EIF3CQ99613 913 aaKnown RBP4.38□□□□□ -1.71
USH2A-202ENST00000366942 NT5C1AQ9BXI3 368 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 NEUROG2Q9H2A3 272 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 ATXN3LQ9H3M9 355 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 HDAC6Q9UBN7 1215 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 NDOR1Q9UHB4 597 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 NOB1Q9ULX3 412 aaKnown RBP4.38□□□□□ -1.71
USH2A-202ENST00000366942 ABCC1P33527 1531 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 TTC41PQ6P2S7 1318 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 SPATA31E1Q6ZUB1 1445 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 PRR23AA6NEV1 266 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 ZNF839A8K0R7 811 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 FIBPO43427 364 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 GNA14O95837 355 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 HOXB8P17481 243 aaPredicted RBP4.38□□□□□ -1.71
USH2A-202ENST00000366942 RPL17P18621 184 aaKnown RBP4.38□□□□□ -1.71
USH2A-202ENST00000366942 CYLC1P35663 651 aaPredicted RBP4.38□□□□□ -1.71
USH2A-202ENST00000366942 MAGEA9P43362 315 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 DGKEP52429 567 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 TFCP2Q12800 502 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 NAA25Q14CX7 972 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 ALG11Q2TAA5 492 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 SV2CQ496J9 727 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 EOGTQ5NDL2 527 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 KLHL10Q6JEL2 608 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 USP53Q70EK8 1073 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 ADCK2Q7Z695 626 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 MSL3Q8N5Y2 521 aaKnown RBP4.38□□□□□ -1.71
USH2A-202ENST00000366942 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP4.38□□□□□ -1.71
USH2A-202ENST00000366942 CARD14Q9BXL6 1004 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 MRPL44Q9H9J2 332 aaKnown RBP4.38□□□□□ -1.71
USH2A-202ENST00000366942 GRPEL1Q9HAV7 217 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 CYP4F11Q9HBI6 524 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 CDH7Q9ULB5 785 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 NENFQ9UMX5 172 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 EXOC6BQ9Y2D4 811 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 PPME1Q9Y570 386 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 RPAP1Q9BWH6 1393 aaPredicted RBP4.38□□□□□ -1.71
USH2A-202ENST00000366942 MLH3Q9UHC1 1453 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 C2CD2LO14523 706 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 ATP2C2O75185 946 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 ENTPD5O75356 428 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 INHAP05111 366 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 CYP19A1P11511 503 aaPredicted RBP4.38□□□□□ -1.71
USH2A-202ENST00000366942 GARTP22102 1010 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 MARK3P27448 753 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 CHRNB4P30926 498 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 GYG1P46976 350 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 ANXA11P50995 505 aaKnown RBP4.38□□□□□ -1.71
USH2A-202ENST00000366942 MTMR2Q13614 643 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 PRR5LQ6MZQ0 368 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 CAVIN1Q6NZI2 390 aaKnown RBP4.38□□□□□ -1.71
USH2A-202ENST00000366942 FAM83AQ86UY5 434 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 LCA5Q86VQ0 697 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 CD302Q8IX05 232 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 ACCSQ96QU6 501 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 SMC6Q96SB8 1091 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 USB1Q9BQ65 265 aaKnown RBP4.38□□□□□ -1.71
USH2A-202ENST00000366942 MRPL4Q9BYD3 311 aaKnown RBP4.38□□□□□ -1.71
USH2A-202ENST00000366942 SLC2A4RGQ9NR83 387 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 GHRLQ9UBU3 117 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 SUN2Q9UH99 717 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 LNPEPQ9UIQ6 1025 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 NDRG2Q9UN36 371 aaKnown RBP4.38□□□□□ -1.71
USH2A-202ENST00000366942 INSRP06213 1382 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 A0A0J9YVX5 310 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 GOLGA8QA0A0J9YX86 632 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 GOLGA8OA6NCC3 632 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 GOLGA8NF8WBI6 632 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 LRCH4O75427 683 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 ANXA6P08133 673 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 ADCYAP1R1P41586 468 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 RTP1P59025 263 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 CXCL9Q07325 125 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 RBBP5Q15291 538 aaKnown RBP4.38□□□□□ -1.71
USH2A-202ENST00000366942 LLGL1Q15334 1064 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 FSCN1Q16658 493 aaKnown RBP4.38□□□□□ -1.71
USH2A-202ENST00000366942 ZNF568Q3ZCX4 644 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 XKR4Q5GH76 650 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 CENPPQ6IPU0 288 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 RETSATQ6NUM9 610 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 PKN3Q6P5Z2 889 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 LRRC43Q8N309 656 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 IL22RA1Q8N6P7 574 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 TTC14Q96N46 770 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 GPRC5CQ9NQ84 441 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 TXLNGQ9NUQ3 528 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 PCDHA12Q9UN75 941 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 ARHGAP10A1A4S6 786 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 ARHGAP42A6NI28 874 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 KHNYNO15037 678 aaKnown RBP4.37□□□□□ -1.71
USH2A-202ENST00000366942 HS6ST1O60243 411 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 VPS4BO75351 444 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 CXCL14O95715 111 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 HIST1H2AGP0C0S8 130 aaPredicted RBP4.37□□□□□ -1.71
USH2A-202ENST00000366942 KRT3P12035 628 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 PAMP19021 973 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms