RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 MCM5P33992 734 aa12.61□□□□□ -0.39
RTN3-204ENST00000354497 ATXN1P54253 815 aaKnown RBP12.61□□□□□ -0.39
RTN3-204ENST00000354497 AP3B2Q13367 1082 aa12.61□□□□□ -0.39
RTN3-204ENST00000354497 VARS2Q5ST30 1063 aaKnown RBP12.61□□□□□ -0.39
RTN3-204ENST00000354497 PHLDB3Q6NSJ2 640 aa12.61□□□□□ -0.39
RTN3-204ENST00000354497 ZNF746Q6NUN9 644 aaPredicted RBP12.61□□□□□ -0.39
RTN3-204ENST00000354497 PPP1R18Q6NYC8 613 aa12.61□□□□□ -0.39
RTN3-204ENST00000354497 SPATA31D4Q6ZUB0 917 aa12.61□□□□□ -0.39
RTN3-204ENST00000354497 ZNF280BQ86YH2 543 aa12.61□□□□□ -0.39
RTN3-204ENST00000354497 EFCAB3Q8N7B9 438 aa12.61□□□□□ -0.39
RTN3-204ENST00000354497 LINC01465Q8N7H1 131 aa12.61□□□□□ -0.39
RTN3-204ENST00000354497 FANCBQ8NB91 859 aa12.61□□□□□ -0.39
RTN3-204ENST00000354497 PJA1Q8NG27 643 aa12.61□□□□□ -0.39
RTN3-204ENST00000354497 ANP32BQ92688 251 aaKnown RBP12.61□□□□□ -0.39
RTN3-204ENST00000354497 SECISBP2LQ93073 1101 aaKnown RBP12.61□□□□□ -0.39
RTN3-204ENST00000354497 CHAMP1Q96JM3 812 aa12.61□□□□□ -0.39
RTN3-204ENST00000354497 TMEM87BQ96K49 555 aa12.61□□□□□ -0.39
RTN3-204ENST00000354497 WDR6Q9NNW5 1121 aaKnown RBP12.61□□□□□ -0.39
RTN3-204ENST00000354497 NRBP2Q9NSY0 501 aa12.61□□□□□ -0.39
RTN3-204ENST00000354497 TBC1D22BQ9NU19 505 aa12.61□□□□□ -0.39
RTN3-204ENST00000354497 DLGAP2Q9P1A6 1054 aa12.61□□□□□ -0.39
RTN3-204ENST00000354497 EPS15L1Q9UBC2 864 aa12.61□□□□□ -0.39
RTN3-204ENST00000354497 USP18Q9UMW8 372 aa12.61□□□□□ -0.39
RTN3-204ENST00000354497 DCDC2BA2VCK2 349 aa12.6□□□□□ -0.39
RTN3-204ENST00000354497 LAMTOR5O43504 91 aa12.6□□□□□ -0.39
RTN3-204ENST00000354497 CHMP2AO43633 222 aa12.6□□□□□ -0.39
RTN3-204ENST00000354497 B4GALT3O60512 393 aa12.6□□□□□ -0.39
RTN3-204ENST00000354497 OFD1O75665 1012 aa12.6□□□□□ -0.39
RTN3-204ENST00000354497 RFPL2O75678 378 aa12.6□□□□□ -0.39
RTN3-204ENST00000354497 GLUD1P00367 558 aa12.6□□□□□ -0.39
RTN3-204ENST00000354497 ADH1AP07327 375 aa12.6□□□□□ -0.39
RTN3-204ENST00000354497 PRKCEQ02156 737 aa12.6□□□□□ -0.39
RTN3-204ENST00000354497 CSTF1Q05048 431 aaKnown RBP12.6□□□□□ -0.39
RTN3-204ENST00000354497 KIAA0319Q5VV43 1072 aa12.6□□□□□ -0.39
RTN3-204ENST00000354497 SYNE3Q6ZMZ3 975 aa12.6□□□□□ -0.39
RTN3-204ENST00000354497 ZNF710Q8N1W2 664 aa12.6□□□□□ -0.39
RTN3-204ENST00000354497 CMASQ8NFW8 434 aaPredicted RBP12.6□□□□□ -0.39
RTN3-204ENST00000354497 NXPE3Q969Y0 559 aa12.6□□□□□ -0.39
RTN3-204ENST00000354497 CHST12Q9NRB3 414 aa12.6□□□□□ -0.39
RTN3-204ENST00000354497 DPP7Q9UHL4 492 aa12.6□□□□□ -0.39
RTN3-204ENST00000354497 FAN1Q9Y2M0 1017 aa12.6□□□□□ -0.39
RTN3-204ENST00000354497 RBM8AQ9Y5S9 174 aaKnown RBP12.6□□□□□ -0.39
RTN3-204ENST00000354497 CNTNAP5Q8WYK1 1306 aa12.6□□□□□ -0.39
RTN3-204ENST00000354497 C2orf16Q68DN1 1984 aa12.59□□□□□ -0.39
RTN3-204ENST00000354497 NCOR2Q9Y618 2525 aa12.59□□□□□ -0.39
RTN3-204ENST00000354497 A0A087WZ62 844 aa12.59□□□□□ -0.39
RTN3-204ENST00000354497 WDR64B1ANS9 1081 aa12.59□□□□□ -0.39
RTN3-204ENST00000354497 IGHDP01880 384 aa12.59□□□□□ -0.39
RTN3-204ENST00000354497 GLULP15104 373 aa12.59□□□□□ -0.39
RTN3-204ENST00000354497 CHMLP26374 656 aa12.59□□□□□ -0.39
RTN3-204ENST00000354497 SETQ01105 290 aaPredicted RBP12.59□□□□□ -0.39
RTN3-204ENST00000354497 DRP2Q13474 957 aa12.59□□□□□ -0.39
RTN3-204ENST00000354497 CATSPER4Q7RTX7 472 aa12.59□□□□□ -0.39
RTN3-204ENST00000354497 ATRIPQ8WXE1 791 aa12.59□□□□□ -0.39
RTN3-204ENST00000354497 RSPH1Q8WYR4 309 aa12.59□□□□□ -0.39
RTN3-204ENST00000354497 PHKBQ93100 1093 aa12.59□□□□□ -0.39
RTN3-204ENST00000354497 PGBD4Q96DM1 585 aa12.59□□□□□ -0.39
RTN3-204ENST00000354497 FDXACB1Q9BRP7 624 aaPredicted RBP12.59□□□□□ -0.39
RTN3-204ENST00000354497 BCO2Q9BYV7 579 aa12.59□□□□□ -0.39
RTN3-204ENST00000354497 FAM105AQ9NUU6 356 aa12.59□□□□□ -0.39
RTN3-204ENST00000354497 STK39Q9UEW8 545 aa12.59□□□□□ -0.39
RTN3-204ENST00000354497 PRG3Q9Y2Y8 225 aaPredicted RBP12.59□□□□□ -0.39
RTN3-204ENST00000354497 NUMBLQ9Y6R0 609 aa12.59□□□□□ -0.39
RTN3-204ENST00000354497 EP300Q09472 2414 aaPredicted RBP12.59□□□□□ -0.39
RTN3-204ENST00000354497 IGLV3-22A0A075B6J6 115 aa12.58□□□□□ -0.4
RTN3-204ENST00000354497 NRP1O14786 923 aa12.58□□□□□ -0.4
RTN3-204ENST00000354497 SPTLC1O15269 473 aa12.58□□□□□ -0.4
RTN3-204ENST00000354497 TEX28O15482 410 aa12.58□□□□□ -0.4
RTN3-204ENST00000354497 DDHD2O94830 711 aa12.58□□□□□ -0.4
RTN3-204ENST00000354497 POMCP01189 267 aa12.58□□□□□ -0.4
RTN3-204ENST00000354497 ALDH2P05091 517 aa12.58□□□□□ -0.4
RTN3-204ENST00000354497 GSPT1P15170 499 aaKnown RBP12.58□□□□□ -0.4
RTN3-204ENST00000354497 OR1G1P47890 313 aa12.58□□□□□ -0.4
RTN3-204ENST00000354497 RAB27AP51159 221 aa12.58□□□□□ -0.4
RTN3-204ENST00000354497 SNW1Q13573 536 aaKnown RBP12.58□□□□□ -0.4
RTN3-204ENST00000354497 UBXN2BQ14CS0 331 aa12.58□□□□□ -0.4
RTN3-204ENST00000354497 MTERF2Q49AM1 385 aa12.58□□□□□ -0.4
RTN3-204ENST00000354497 PRR16Q569H4 304 aa12.58□□□□□ -0.4
RTN3-204ENST00000354497 TTC22Q5TAA0 569 aa12.58□□□□□ -0.4
RTN3-204ENST00000354497 PALB2Q86YC2 1186 aa12.58□□□□□ -0.4
RTN3-204ENST00000354497 GLYCTKQ8IVS8 523 aa12.58□□□□□ -0.4
RTN3-204ENST00000354497 MAML2Q8IZL2 1156 aaPredicted RBP12.58□□□□□ -0.4
RTN3-204ENST00000354497 GPR161Q8N6U8 529 aaKnown RBP12.58□□□□□ -0.4
RTN3-204ENST00000354497 SHDQ96IW2 340 aa12.58□□□□□ -0.4
RTN3-204ENST00000354497 MTA3Q9BTC8 594 aa12.58□□□□□ -0.4
RTN3-204ENST00000354497 HERC2P3Q9BVR0 1158 aa12.58□□□□□ -0.4
RTN3-204ENST00000354497 SEPT9Q9UHD8 586 aaPredicted RBP12.58□□□□□ -0.4
RTN3-204ENST00000354497 SMG5Q9UPR3 1016 aaKnown RBP12.58□□□□□ -0.4
RTN3-204ENST00000354497 SSX2IPQ9Y2D8 614 aa12.58□□□□□ -0.4
RTN3-204ENST00000354497 V9GY48 417 aaPredicted RBP12.58□□□□□ -0.4
RTN3-204ENST00000354497 CACNA1BQ00975 2339 aa12.58□□□□□ -0.4
RTN3-204ENST00000354497 WDR87Q6ZQQ6 2873 aa12.57□□□□□ -0.4
RTN3-204ENST00000354497 ZNF862O60290 1169 aa12.57□□□□□ -0.4
RTN3-204ENST00000354497 LILRB3O75022 631 aa12.57□□□□□ -0.4
RTN3-204ENST00000354497 SOD2P04179 222 aa12.57□□□□□ -0.4
RTN3-204ENST00000354497 LAMP2P13473 410 aa12.57□□□□□ -0.4
RTN3-204ENST00000354497 LIFRP42702 1097 aa12.57□□□□□ -0.4
RTN3-204ENST00000354497 GLUD2P49448 558 aa12.57□□□□□ -0.4
RTN3-204ENST00000354497 CLK2P49760 499 aaKnown RBP12.57□□□□□ -0.4
RTN3-204ENST00000354497 DNM2P50570 870 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms