RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 OLFML3Q9NRN5 406 aa24.4■■□□□ 1.5
SHMT1-203ENST00000354098 AGPAT5Q9NUQ2 364 aa24.4■■□□□ 1.5
SHMT1-203ENST00000354098 PRMT7Q9NVM4 692 aaPredicted RBP24.4■■□□□ 1.5
SHMT1-203ENST00000354098 PIN4Q9Y237 131 aaKnown RBP24.4■■□□□ 1.5
SHMT1-203ENST00000354098 LOC101059915A0A1B0GWI6 518 aaPredicted RBP24.39■■□□□ 1.49
SHMT1-203ENST00000354098 ENPP3O14638 875 aa24.39■■□□□ 1.49
SHMT1-203ENST00000354098 RPN1P04843 607 aaKnown RBP24.39■■□□□ 1.49
SHMT1-203ENST00000354098 BMP8BP34820 402 aa24.39■■□□□ 1.49
SHMT1-203ENST00000354098 FAM187BQ17R55 369 aa24.39■■□□□ 1.49
SHMT1-203ENST00000354098 KMT5BQ4FZB7 885 aa24.39■■□□□ 1.49
SHMT1-203ENST00000354098 PPP4R3CPQ6ZMV5 832 aa24.39■■□□□ 1.49
SHMT1-203ENST00000354098 LIN28BQ6ZN17 250 aaKnown RBP eCLIP24.39■■□□□ 1.49
SHMT1-203ENST00000354098 HERVK_113Q902F9 699 aa24.39■■□□□ 1.49
SHMT1-203ENST00000354098 FTHL17Q9BXU8 183 aa24.39■■□□□ 1.49
SHMT1-203ENST00000354098 PHLPP2Q6ZVD8 1323 aa24.38■■□□□ 1.49
SHMT1-203ENST00000354098 ABHD14A-ACY1A0A1B0GW23 586 aa24.38■■□□□ 1.49
SHMT1-203ENST00000354098 ZBBXA8MT70 800 aa24.38■■□□□ 1.49
SHMT1-203ENST00000354098 ACKR2O00590 384 aa24.38■■□□□ 1.49
SHMT1-203ENST00000354098 MYBP10242 640 aa24.38■■□□□ 1.49
SHMT1-203ENST00000354098 ARF4P18085 180 aaPredicted RBP24.38■■□□□ 1.49
SHMT1-203ENST00000354098 PCBP1Q15365 356 aaKnown RBP eCLIP24.38■■□□□ 1.49
SHMT1-203ENST00000354098 CAMK4Q16566 473 aa24.38■■□□□ 1.49
SHMT1-203ENST00000354098 CDR2LQ86X02 465 aaPredicted RBP24.38■■□□□ 1.49
SHMT1-203ENST00000354098 PRO3102Q9H379 93 aa24.38■■□□□ 1.49
SHMT1-203ENST00000354098 BAIAP3O94812 1187 aa24.37■■□□□ 1.49
SHMT1-203ENST00000354098 GTF2BQ00403 316 aa24.37■■□□□ 1.49
SHMT1-203ENST00000354098 PRPF4BQ13523 1007 aaKnown RBP24.37■■□□□ 1.49
SHMT1-203ENST00000354098 NT5DC1Q5TFE4 455 aa24.37■■□□□ 1.49
SHMT1-203ENST00000354098 ELOA2Q8IYF1 753 aaPredicted RBP24.37■■□□□ 1.49
SHMT1-203ENST00000354098 PRIMPOLQ96LW4 560 aa24.37■■□□□ 1.49
SHMT1-203ENST00000354098 STRA6Q9BX79 667 aa24.37■■□□□ 1.49
SHMT1-203ENST00000354098 TBX20Q9UMR3 447 aa24.37■■□□□ 1.49
SHMT1-203ENST00000354098 H0YCG3 227 aa24.37■■□□□ 1.49
SHMT1-203ENST00000354098 GCNT3O95395 438 aa24.37■■□□□ 1.49
SHMT1-203ENST00000354098 ZSCAN20P17040 1043 aaPredicted RBP24.37■■□□□ 1.49
SHMT1-203ENST00000354098 WDR5P61964 334 aaKnown RBP24.37■■□□□ 1.49
SHMT1-203ENST00000354098 FAM26FQ5R3K3 315 aa24.37■■□□□ 1.49
SHMT1-203ENST00000354098 TSPYL2Q9H2G4 693 aaPredicted RBP24.37■■□□□ 1.49
SHMT1-203ENST00000354098 ST6GALNAC4Q9H4F1 302 aa24.37■■□□□ 1.49
SHMT1-203ENST00000354098 SLC39A2Q9NP94 309 aa24.37■■□□□ 1.49
SHMT1-203ENST00000354098 CHST12Q9NRB3 414 aa24.37■■□□□ 1.49
SHMT1-203ENST00000354098 RGS18Q9NS28 235 aa24.37■■□□□ 1.49
SHMT1-203ENST00000354098 PCDHA5Q9Y5H7 936 aa24.37■■□□□ 1.49
SHMT1-203ENST00000354098 CNTNAP2Q9UHC6 1331 aa24.36■■□□□ 1.49
SHMT1-203ENST00000354098 PPP1R37O75864 691 aa24.36■■□□□ 1.49
SHMT1-203ENST00000354098 DEFB103AP81534 67 aa24.36■■□□□ 1.49
SHMT1-203ENST00000354098 KCNA1Q09470 495 aa24.36■■□□□ 1.49
SHMT1-203ENST00000354098 STRN3Q13033 797 aa24.36■■□□□ 1.49
SHMT1-203ENST00000354098 RASIP1Q5U651 963 aa24.36■■□□□ 1.49
SHMT1-203ENST00000354098 KCNN1Q92952 543 aa24.36■■□□□ 1.49
SHMT1-203ENST00000354098 EXOC1Q9NV70 894 aa24.36■■□□□ 1.49
SHMT1-203ENST00000354098 HOOK1Q9UJC3 728 aaKnown RBP24.36■■□□□ 1.49
SHMT1-203ENST00000354098 IBSPP21815 317 aaPredicted RBP24.35■■□□□ 1.49
SHMT1-203ENST00000354098 NCBP1Q09161 790 aaKnown RBP24.35■■□□□ 1.49
SHMT1-203ENST00000354098 STK4Q13043 487 aa24.35■■□□□ 1.49
SHMT1-203ENST00000354098 TWF2Q6IBS0 349 aaKnown RBP24.35■■□□□ 1.49
SHMT1-203ENST00000354098 TMCO2Q7Z6W1 182 aaPredicted RBP24.35■■□□□ 1.49
SHMT1-203ENST00000354098 SLC17A8Q8NDX2 589 aa24.35■■□□□ 1.49
SHMT1-203ENST00000354098 RNPC3Q96LT9 517 aaKnown RBP24.35■■□□□ 1.49
SHMT1-203ENST00000354098 TARS2Q9BW92 718 aaKnown RBP24.35■■□□□ 1.49
SHMT1-203ENST00000354098 IKZF4Q9H2S9 585 aa24.35■■□□□ 1.49
SHMT1-203ENST00000354098 A0A1B0GUA9 196 aa24.34■■□□□ 1.49
SHMT1-203ENST00000354098 AXLP30530 894 aa24.34■■□□□ 1.49
SHMT1-203ENST00000354098 UBXN11Q5T124 520 aa24.34■■□□□ 1.49
SHMT1-203ENST00000354098 PRPF38BQ5VTL8 546 aaKnown RBP24.34■■□□□ 1.49
SHMT1-203ENST00000354098 SPATA20Q8TB22 786 aa24.34■■□□□ 1.49
SHMT1-203ENST00000354098 C9IYK1 514 aa24.34■■□□□ 1.49
SHMT1-203ENST00000354098 PRPF6O94906 941 aaKnown RBP24.34■■□□□ 1.49
SHMT1-203ENST00000354098 RHOBTB3O94955 611 aa24.34■■□□□ 1.49
SHMT1-203ENST00000354098 TMEM132AQ24JP5 1023 aa24.34■■□□□ 1.49
SHMT1-203ENST00000354098 EEF1DP3Q658K8 133 aa24.34■■□□□ 1.49
SHMT1-203ENST00000354098 NOTUMQ6P988 496 aa24.34■■□□□ 1.49
SHMT1-203ENST00000354098 ACO2Q99798 780 aaKnown RBP24.34■■□□□ 1.49
SHMT1-203ENST00000354098 EIF2AQ9BY44 585 aaKnown RBP24.34■■□□□ 1.49
SHMT1-203ENST00000354098 MRPL4Q9BYD3 311 aaKnown RBP24.34■■□□□ 1.49
SHMT1-203ENST00000354098 CLSTN2Q9H4D0 955 aa24.34■■□□□ 1.49
SHMT1-203ENST00000354098 PDZD7Q9H5P4 517 aa24.34■■□□□ 1.49
SHMT1-203ENST00000354098 COLQQ9Y215 455 aaPredicted RBP24.34■■□□□ 1.49
SHMT1-203ENST00000354098 PCDHB13Q9Y5F0 798 aa24.34■■□□□ 1.49
SHMT1-203ENST00000354098 EFCAB14O75071 495 aa24.33■■□□□ 1.49
SHMT1-203ENST00000354098 KCNJ6P48051 423 aa24.33■■□□□ 1.49
SHMT1-203ENST00000354098 ATF7IP2Q5U623 682 aa24.33■■□□□ 1.49
SHMT1-203ENST00000354098 SLC24A5Q71RS6 500 aa24.33■■□□□ 1.49
SHMT1-203ENST00000354098 EPM2AIP1Q7L775 607 aaPredicted RBP24.33■■□□□ 1.49
SHMT1-203ENST00000354098 MAP4K3Q8IVH8 894 aa24.33■■□□□ 1.49
SHMT1-203ENST00000354098 TDHQ8IZJ6 230 aa24.33■■□□□ 1.49
SHMT1-203ENST00000354098 MYOCDQ8IZQ8 938 aa24.33■■□□□ 1.49
SHMT1-203ENST00000354098 KIAA0895Q8NCT3 520 aa24.33■■□□□ 1.49
SHMT1-203ENST00000354098 SMARCE1Q969G3 411 aa24.33■■□□□ 1.49
SHMT1-203ENST00000354098 SLC4A7Q9Y6M7 1214 aa24.33■■□□□ 1.49
SHMT1-203ENST00000354098 MICAL3Q7RTP6 2002 aa24.33■■□□□ 1.49
SHMT1-203ENST00000354098 SMC2O95347 1197 aa24.32■■□□□ 1.48
SHMT1-203ENST00000354098 SCP2P22307 547 aa24.32■■□□□ 1.48
SHMT1-203ENST00000354098 SARSP49591 514 aaKnown RBP24.32■■□□□ 1.48
SHMT1-203ENST00000354098 KCNB1Q14721 858 aa24.32■■□□□ 1.48
SHMT1-203ENST00000354098 ZBTB45Q96K62 511 aaPredicted RBP24.32■■□□□ 1.48
SHMT1-203ENST00000354098 MTIF3Q9H2K0 278 aaKnown RBP24.32■■□□□ 1.48
SHMT1-203ENST00000354098 AMHP03971 560 aa24.31■■□□□ 1.48
SHMT1-203ENST00000354098 HOXD13P35453 343 aa24.31■■□□□ 1.48
SHMT1-203ENST00000354098 FAM189BP81408 668 aa24.31■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms