RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 GBP6Q6ZN66 633 aa16.87■□□□□ 0.29
LIMS1-202ENST00000338045 LRRC71Q8N4P6 559 aa16.87■□□□□ 0.29
LIMS1-202ENST00000338045 RDH13Q8NBN7 331 aa16.87■□□□□ 0.29
LIMS1-202ENST00000338045 ZSWIM2Q8NEG5 633 aa16.87■□□□□ 0.29
LIMS1-202ENST00000338045 CHP1Q99653 195 aa16.87■□□□□ 0.29
LIMS1-202ENST00000338045 TUT1Q9H6E5 874 aaKnown RBP16.87■□□□□ 0.29
LIMS1-202ENST00000338045 SUGCTQ9HAC7 445 aa16.87■□□□□ 0.29
LIMS1-202ENST00000338045 PPP2R2CQ9Y2T4 447 aa16.87■□□□□ 0.29
LIMS1-202ENST00000338045 MGAMO43451 1857 aa16.87■□□□□ 0.29
LIMS1-202ENST00000338045 VAMP7P51809 220 aa16.86■□□□□ 0.29
LIMS1-202ENST00000338045 EFNA5P52803 228 aa16.86■□□□□ 0.29
LIMS1-202ENST00000338045 FCGRTP55899 365 aa16.86■□□□□ 0.29
LIMS1-202ENST00000338045 ENPEPQ07075 957 aa16.86■□□□□ 0.29
LIMS1-202ENST00000338045 REXO1L1PQ8IX06 675 aa16.86■□□□□ 0.29
LIMS1-202ENST00000338045 LINC01465Q8N7H1 131 aa16.86■□□□□ 0.29
LIMS1-202ENST00000338045 POMGNT1Q8WZA1 660 aa16.86■□□□□ 0.29
LIMS1-202ENST00000338045 CCDC113Q9H0I3 377 aa16.86■□□□□ 0.29
LIMS1-202ENST00000338045 SUCLA2Q9P2R7 463 aaPredicted RBP16.86■□□□□ 0.29
LIMS1-202ENST00000338045 FBXL5Q9UKA1 691 aa16.86■□□□□ 0.29
LIMS1-202ENST00000338045 KIAA0391O15091 583 aaKnown RBP16.86■□□□□ 0.29
LIMS1-202ENST00000338045 MAGEB2O15479 319 aa16.86■□□□□ 0.29
LIMS1-202ENST00000338045 ZSCAN12O43309 604 aa16.86■□□□□ 0.29
LIMS1-202ENST00000338045 ADRB2P07550 413 aa16.86■□□□□ 0.29
LIMS1-202ENST00000338045 SLC9A1P19634 815 aa16.86■□□□□ 0.29
LIMS1-202ENST00000338045 LIG4P49917 911 aa16.86■□□□□ 0.29
LIMS1-202ENST00000338045 LACTBP83111 547 aaPredicted RBP16.86■□□□□ 0.29
LIMS1-202ENST00000338045 SNRNP35Q16560 246 aaKnown RBP16.86■□□□□ 0.29
LIMS1-202ENST00000338045 DEFB115Q30KQ5 88 aa16.86■□□□□ 0.29
LIMS1-202ENST00000338045 C1orf220Q5T0J3 134 aa16.86■□□□□ 0.29
LIMS1-202ENST00000338045 EFCAB12Q6NXP0 572 aa16.86■□□□□ 0.29
LIMS1-202ENST00000338045 PDXDC1Q6P996 788 aa16.86■□□□□ 0.29
LIMS1-202ENST00000338045 CBWD2Q8IUF1 395 aa16.86■□□□□ 0.29
LIMS1-202ENST00000338045 SYN2Q92777 582 aaPredicted RBP16.86■□□□□ 0.29
LIMS1-202ENST00000338045 BICD1Q96G01 975 aa16.86■□□□□ 0.29
LIMS1-202ENST00000338045 CAPNS2Q96L46 248 aa16.86■□□□□ 0.29
LIMS1-202ENST00000338045 NUCKS1Q9H1E3 243 aaKnown RBP16.86■□□□□ 0.29
LIMS1-202ENST00000338045 CREBZFQ9NS37 354 aa16.86■□□□□ 0.29
LIMS1-202ENST00000338045 ZNHIT6Q9NWK9 470 aaKnown RBP16.86■□□□□ 0.29
LIMS1-202ENST00000338045 Q9Y3F1 56 aa16.86■□□□□ 0.29
LIMS1-202ENST00000338045 ADGRG1Q9Y653 693 aa16.86■□□□□ 0.29
LIMS1-202ENST00000338045 PMM2O15305 246 aa16.85■□□□□ 0.29
LIMS1-202ENST00000338045 ASAP2O43150 1006 aa16.85■□□□□ 0.29
LIMS1-202ENST00000338045 DYNC1LI2O43237 492 aaPredicted RBP16.85■□□□□ 0.29
LIMS1-202ENST00000338045 AOC2O75106 756 aa16.85■□□□□ 0.29
LIMS1-202ENST00000338045 TRIM49P0CI25 452 aa16.85■□□□□ 0.29
LIMS1-202ENST00000338045 TRIM49CP0CI26 452 aa16.85■□□□□ 0.29
LIMS1-202ENST00000338045 PSMC4P43686 418 aa16.85■□□□□ 0.29
LIMS1-202ENST00000338045 POLR2FP61218 127 aaKnown RBP16.85■□□□□ 0.29
LIMS1-202ENST00000338045 CBWD6Q4V339 395 aa16.85■□□□□ 0.29
LIMS1-202ENST00000338045 CBWD3Q5JTY5 395 aa16.85■□□□□ 0.29
LIMS1-202ENST00000338045 CBWD5Q5RIA9 395 aa16.85■□□□□ 0.29
LIMS1-202ENST00000338045 KLHDC7AQ5VTJ3 777 aa16.85■□□□□ 0.29
LIMS1-202ENST00000338045 CACNA2D4Q7Z3S7 1137 aa16.85■□□□□ 0.29
LIMS1-202ENST00000338045 TLK2Q86UE8 772 aa16.85■□□□□ 0.29
LIMS1-202ENST00000338045 PLEKHO2Q8TD55 490 aa16.85■□□□□ 0.29
LIMS1-202ENST00000338045 C16orf45Q96MC5 204 aaPredicted RBP16.85■□□□□ 0.29
LIMS1-202ENST00000338045 MFSD14AQ96MC6 490 aa16.85■□□□□ 0.29
LIMS1-202ENST00000338045 C2orf40Q9H1Z8 148 aa16.85■□□□□ 0.29
LIMS1-202ENST00000338045 SIX2Q9NPC8 291 aa16.85■□□□□ 0.29
LIMS1-202ENST00000338045 GCNT4Q9P109 453 aa16.85■□□□□ 0.29
LIMS1-202ENST00000338045 GOLGA8IPA6NC78 632 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 LRRC53A6NM62 1247 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 GOLGA8JA6NMD2 632 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 P4HA2O15460 535 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 EDN1P05305 212 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 CCDC175P0C221 793 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 KLRC1P26715 233 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 CLCN3P51790 818 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 DLG4P78352 724 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 POU5F1BQ06416 359 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 SLFN12LQ6IEE8 588 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 ZPBP2Q6X784 338 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 RRAGAQ7L523 313 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 GPD1LQ8N335 351 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 RNF149Q8NC42 400 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 TMC2Q8TDI7 906 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 SAAL1Q96ER3 474 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 DESI2Q9BSY9 194 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 NFKBIZQ9BYH8 718 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 ARHGAP39Q9C0H5 1083 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 KIAA1586Q9HCI6 787 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 GOLGA6L9A6NEM1 432 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 MSCO60682 206 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 N4BP1O75113 896 aaKnown RBP16.84■□□□□ 0.29
LIMS1-202ENST00000338045 F2P00734 622 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 ACTN1P12814 892 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 UCHL3P15374 230 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 APBA1Q02410 837 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 TFDP1Q14186 410 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 PTPN14Q15678 1187 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 ZBTB8OSQ8IWT0 167 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 CCDC170Q8IYT3 715 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 PARD3BQ8TEW8 1205 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 TARS2Q9BW92 718 aaKnown RBP16.84■□□□□ 0.29
LIMS1-202ENST00000338045 CFHR5Q9BXR6 569 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 NLRC4Q9NPP4 1024 aa16.84■□□□□ 0.29
LIMS1-202ENST00000338045 EPN1Q9Y6I3 576 aaPredicted RBP16.84■□□□□ 0.29
LIMS1-202ENST00000338045 EXTL3O43909 919 aa16.83■□□□□ 0.28
LIMS1-202ENST00000338045 NDUFA10O95299 355 aa16.83■□□□□ 0.28
LIMS1-202ENST00000338045 SRGAP2CP0DJJ0 459 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms