RNA–Protein interactions for RNA: ENST00000637285.1

SCN1A-215, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 100 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-215ENST00000637285 FSTL4Q6MZW2 842 aa2.32□□□□□ -2.04
SCN1A-215ENST00000637285 GDF7Q7Z4P5 450 aa2.32□□□□□ -2.04
SCN1A-215ENST00000637285 C1QL2Q7Z5L3 287 aa2.32□□□□□ -2.04
SCN1A-215ENST00000637285 SLC44A3Q8N4M1 653 aa2.32□□□□□ -2.04
SCN1A-215ENST00000637285 CPEB3Q8NE35 698 aaKnown RBP2.32□□□□□ -2.04
SCN1A-215ENST00000637285 ANKS1AQ92625 1134 aa2.32□□□□□ -2.04
SCN1A-215ENST00000637285 NKD2Q969F2 451 aaPredicted RBP2.32□□□□□ -2.04
SCN1A-215ENST00000637285 DYDC2Q96IM9 177 aa2.32□□□□□ -2.04
SCN1A-215ENST00000637285 NDC1Q9BTX1 674 aa2.32□□□□□ -2.04
SCN1A-215ENST00000637285 KRTAP2-2Q9BYT5 123 aa2.32□□□□□ -2.04
SCN1A-215ENST00000637285 LRRC3CA6NJW4 275 aa2.31□□□□□ -2.04
SCN1A-215ENST00000637285 ARVCFO00192 962 aa2.31□□□□□ -2.04
SCN1A-215ENST00000637285 HOXA3O43365 443 aaPredicted RBP2.31□□□□□ -2.04
SCN1A-215ENST00000637285 ESRRBO95718 433 aa2.31□□□□□ -2.04
SCN1A-215ENST00000637285 RECKO95980 971 aa2.31□□□□□ -2.04
SCN1A-215ENST00000637285 KRTAP5-9P26371 169 aa2.31□□□□□ -2.04
SCN1A-215ENST00000637285 KIR2DL3P43628 341 aa2.31□□□□□ -2.04
SCN1A-215ENST00000637285 RGS3P49796 1198 aa2.31□□□□□ -2.04
SCN1A-215ENST00000637285 RNASE9P60153 205 aaKnown RBP2.31□□□□□ -2.04
SCN1A-215ENST00000637285 LACTBP83111 547 aaPredicted RBP2.31□□□□□ -2.04
SCN1A-215ENST00000637285 SLC6A3Q01959 620 aa2.31□□□□□ -2.04
SCN1A-215ENST00000637285 MPP3Q13368 585 aa2.31□□□□□ -2.04
SCN1A-215ENST00000637285 TP53BP2Q13625 1128 aa2.31□□□□□ -2.04
SCN1A-215ENST00000637285 VPS72Q15906 364 aa2.31□□□□□ -2.04
SCN1A-215ENST00000637285 BEAN1Q3B7T3 259 aa2.31□□□□□ -2.04
SCN1A-215ENST00000637285 CATSPEREQ5SY80 951 aa2.31□□□□□ -2.04
SCN1A-215ENST00000637285 ABHD17BQ5VST6 288 aa2.31□□□□□ -2.04
SCN1A-215ENST00000637285 BRAPQ7Z569 592 aa2.31□□□□□ -2.04
SCN1A-215ENST00000637285 NOSTRINQ8IVI9 506 aa2.31□□□□□ -2.04
SCN1A-215ENST00000637285 ASB10Q8WXI3 467 aa2.31□□□□□ -2.04
SCN1A-215ENST00000637285 C1QTNF7Q9BXJ2 289 aa2.31□□□□□ -2.04
SCN1A-215ENST00000637285 TEX101Q9BY14 249 aa2.31□□□□□ -2.04
SCN1A-215ENST00000637285 CPEB1Q9BZB8 566 aaKnown RBP2.31□□□□□ -2.04
SCN1A-215ENST00000637285 C14orf93Q9H972 538 aaKnown RBP2.31□□□□□ -2.04
SCN1A-215ENST00000637285 HDAC5Q9UQL6 1122 aa2.31□□□□□ -2.04
SCN1A-215ENST00000637285 PCDHA9Q9Y5H5 950 aa2.31□□□□□ -2.04
SCN1A-215ENST00000637285 GAGE12BA1L429 117 aa2.3□□□□□ -2.04
SCN1A-215ENST00000637285 GAGE12HA6NDE8 117 aa2.3□□□□□ -2.04
SCN1A-215ENST00000637285 LEFTY2O00292 366 aa2.3□□□□□ -2.04
SCN1A-215ENST00000637285 DNAJC6O75061 913 aa2.3□□□□□ -2.04
SCN1A-215ENST00000637285 CFBP00751 764 aa2.3□□□□□ -2.04
SCN1A-215ENST00000637285 PDIA4P13667 645 aaKnown RBP2.3□□□□□ -2.04
SCN1A-215ENST00000637285 DDX6P26196 483 aaKnown RBP eCLIP2.3□□□□□ -2.04
SCN1A-215ENST00000637285 MPLP40238 635 aa2.3□□□□□ -2.04
SCN1A-215ENST00000637285 HDLBPQ00341 1268 aaKnown RBP2.3□□□□□ -2.04
SCN1A-215ENST00000637285 NHLH1Q02575 133 aa2.3□□□□□ -2.04
SCN1A-215ENST00000637285 ROM1Q03395 351 aa2.3□□□□□ -2.04
SCN1A-215ENST00000637285 FAM83AQ86UY5 434 aa2.3□□□□□ -2.04
SCN1A-215ENST00000637285 SH2D3CQ8N5H7 860 aa2.3□□□□□ -2.04
SCN1A-215ENST00000637285 GLB1L3Q8NCI6 653 aaPredicted RBP2.3□□□□□ -2.04
SCN1A-215ENST00000637285 OR52N2Q8NGI0 321 aa2.3□□□□□ -2.04
SCN1A-215ENST00000637285 PTPRN2Q92932 1015 aa2.3□□□□□ -2.04
SCN1A-215ENST00000637285 ZBTB9Q96C00 473 aa2.3□□□□□ -2.04
SCN1A-215ENST00000637285 FOXRED1Q96CU9 486 aaPredicted RBP2.3□□□□□ -2.04
SCN1A-215ENST00000637285 DCLRE1CQ96SD1 692 aaKnown RBP2.3□□□□□ -2.04
SCN1A-215ENST00000637285 FOXB1Q99853 325 aa2.3□□□□□ -2.04
SCN1A-215ENST00000637285 HAPLN2Q9GZV7 340 aa2.3□□□□□ -2.04
SCN1A-215ENST00000637285 CCSER2Q9H7U1 834 aa2.3□□□□□ -2.04
SCN1A-215ENST00000637285 ALG13Q9NP73 1137 aaKnown RBP2.3□□□□□ -2.04
SCN1A-215ENST00000637285 POLR3BQ9NW08 1133 aaPredicted RBP2.3□□□□□ -2.04
SCN1A-215ENST00000637285 WDR3Q9UNX4 943 aaKnown RBP eCLIP2.3□□□□□ -2.04
SCN1A-215ENST00000637285 MAP3K2Q9Y2U5 619 aa2.3□□□□□ -2.04
SCN1A-215ENST00000637285 R3HCC1Q9Y3T6 440 aaKnown RBP2.3□□□□□ -2.04
SCN1A-215ENST00000637285 B3GALT1Q9Y5Z6 326 aa2.3□□□□□ -2.04
SCN1A-215ENST00000637285 SALL3Q9BXA9 1300 aa2.3□□□□□ -2.04
SCN1A-215ENST00000637285 CNTNAP2Q9UHC6 1331 aa2.3□□□□□ -2.04
SCN1A-215ENST00000637285 ARHGEF17Q96PE2 2063 aaPredicted RBP2.3□□□□□ -2.04
SCN1A-215ENST00000637285 HIP1RO75146 1068 aa2.29□□□□□ -2.04
SCN1A-215ENST00000637285 HLA-DOAP06340 250 aa2.29□□□□□ -2.04
SCN1A-215ENST00000637285 ITGAMP11215 1152 aa2.29□□□□□ -2.04
SCN1A-215ENST00000637285 SDHAP31040 664 aa2.29□□□□□ -2.04
SCN1A-215ENST00000637285 BMPR1AP36894 532 aa2.29□□□□□ -2.04
SCN1A-215ENST00000637285 BLOC1S1P78537 153 aa2.29□□□□□ -2.04
SCN1A-215ENST00000637285 LCE1EQ5T753 118 aa2.29□□□□□ -2.04
SCN1A-215ENST00000637285 SLFN12LQ6IEE8 588 aa2.29□□□□□ -2.04
SCN1A-215ENST00000637285 ZNF425Q6IV72 752 aa2.29□□□□□ -2.04
SCN1A-215ENST00000637285 RTN4RL1Q86UN2 441 aaPredicted RBP2.29□□□□□ -2.04
SCN1A-215ENST00000637285 PLXDC1Q8IUK5 500 aa2.29□□□□□ -2.04
SCN1A-215ENST00000637285 CELF2-AS1Q8N7Q2 184 aa2.29□□□□□ -2.04
SCN1A-215ENST00000637285 OR5M3Q8NGP4 307 aa2.29□□□□□ -2.04
SCN1A-215ENST00000637285 SLC9A6Q92581 669 aa2.29□□□□□ -2.04
SCN1A-215ENST00000637285 DLG3Q92796 817 aa2.29□□□□□ -2.04
SCN1A-215ENST00000637285 UIMC1Q96RL1 719 aa2.29□□□□□ -2.04
SCN1A-215ENST00000637285 CAPN10Q9HC96 672 aa2.29□□□□□ -2.04
SCN1A-215ENST00000637285 SPON1Q9HCB6 807 aa2.29□□□□□ -2.04
SCN1A-215ENST00000637285 SEMA4GQ9NTN9 838 aa2.29□□□□□ -2.04
SCN1A-215ENST00000637285 ING3Q9NXR8 418 aa2.29□□□□□ -2.04
SCN1A-215ENST00000637285 KCMF1Q9P0J7 381 aa2.29□□□□□ -2.04
SCN1A-215ENST00000637285 RNF181Q9P0P0 153 aa2.29□□□□□ -2.04
SCN1A-215ENST00000637285 DKK2Q9UBU2 259 aa2.29□□□□□ -2.04
SCN1A-215ENST00000637285 ZNF70Q9UC06 446 aaPredicted RBP2.29□□□□□ -2.04
SCN1A-215ENST00000637285 CHST2Q9Y4C5 530 aa2.29□□□□□ -2.04
SCN1A-215ENST00000637285 SLC12A8A0AV02 714 aa2.28□□□□□ -2.04
SCN1A-215ENST00000637285 CGB1A6NKQ9 187 aa2.28□□□□□ -2.04
SCN1A-215ENST00000637285 MGST3O14880 152 aa2.28□□□□□ -2.04
SCN1A-215ENST00000637285 C1QL1O75973 258 aa2.28□□□□□ -2.04
SCN1A-215ENST00000637285 SPDEFO95238 335 aa2.28□□□□□ -2.04
SCN1A-215ENST00000637285 CRTAMO95727 393 aa2.28□□□□□ -2.04
SCN1A-215ENST00000637285 CBSLP0DN79 551 aa2.28□□□□□ -2.04
SCN1A-215ENST00000637285 EGR2P11161 476 aaPredicted RBP2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms