RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 TMPRSS11EQ9UL52 423 aa8.73□□□□□ -1.01
SS18-214ENST00000580003 A0A1W2PRX2 142 aa8.72□□□□□ -1.01
SS18-214ENST00000580003 JUNP05412 331 aaKnown RBP8.72□□□□□ -1.01
SS18-214ENST00000580003 VSIG10L2P0DP72 767 aa8.72□□□□□ -1.01
SS18-214ENST00000580003 LGALS4P56470 323 aa8.72□□□□□ -1.01
SS18-214ENST00000580003 SCAND1P57086 179 aa8.72□□□□□ -1.01
SS18-214ENST00000580003 SPIDRQ14159 915 aa8.72□□□□□ -1.01
SS18-214ENST00000580003 ACAP1Q15027 740 aa8.72□□□□□ -1.01
SS18-214ENST00000580003 GAGE13Q4V321 117 aa8.72□□□□□ -1.01
SS18-214ENST00000580003 UNC5BQ8IZJ1 945 aa8.72□□□□□ -1.01
SS18-214ENST00000580003 FUKQ8N0W3 1084 aa8.72□□□□□ -1.01
SS18-214ENST00000580003 PPP1R14CQ8TAE6 165 aa8.72□□□□□ -1.01
SS18-214ENST00000580003 RAX2Q96IS3 184 aa8.72□□□□□ -1.01
SS18-214ENST00000580003 C14orf119Q9NWQ9 140 aa8.72□□□□□ -1.01
SS18-214ENST00000580003 TCAF1Q9Y4C2 921 aa8.72□□□□□ -1.01
SS18-214ENST00000580003 TOX4O94842 621 aa8.71□□□□□ -1.02
SS18-214ENST00000580003 SEC24DO94855 1032 aaPredicted RBP8.71□□□□□ -1.02
SS18-214ENST00000580003 GAAP10253 952 aa8.71□□□□□ -1.02
SS18-214ENST00000580003 KIR2DL3P43628 341 aa8.71□□□□□ -1.02
SS18-214ENST00000580003 CD69Q07108 199 aa8.71□□□□□ -1.02
SS18-214ENST00000580003 MGAT5Q09328 741 aa8.71□□□□□ -1.02
SS18-214ENST00000580003 TRIM25Q14258 630 aaKnown RBP8.71□□□□□ -1.02
SS18-214ENST00000580003 CPEB4Q17RY0 729 aaKnown RBP eCLIP8.71□□□□□ -1.02
SS18-214ENST00000580003 GAREM2Q75VX8 874 aa8.71□□□□□ -1.02
SS18-214ENST00000580003 GPR135Q8IZ08 494 aa8.71□□□□□ -1.02
SS18-214ENST00000580003 ZCRB1Q8TBF4 217 aaKnown RBP8.71□□□□□ -1.02
SS18-214ENST00000580003 Q8TCH9 128 aa8.71□□□□□ -1.02
SS18-214ENST00000580003 SLC5A4Q9NY91 659 aa8.71□□□□□ -1.02
SS18-214ENST00000580003 RCAN3Q9UKA8 241 aa8.71□□□□□ -1.02
SS18-214ENST00000580003 SLC30A1Q9Y6M5 507 aa8.71□□□□□ -1.02
SS18-214ENST00000580003 PHLDB1Q86UU1 1377 aa8.71□□□□□ -1.02
SS18-214ENST00000580003 LY86O95711 162 aa8.7□□□□□ -1.02
SS18-214ENST00000580003 DUSP8Q13202 625 aa8.7□□□□□ -1.02
SS18-214ENST00000580003 POLNQ7Z5Q5 900 aa8.7□□□□□ -1.02
SS18-214ENST00000580003 NECAB2Q7Z6G3 386 aa8.7□□□□□ -1.02
SS18-214ENST00000580003 LYSMD2Q8IV50 215 aa8.7□□□□□ -1.02
SS18-214ENST00000580003 TGFBRAP1Q8WUH2 860 aa8.7□□□□□ -1.02
SS18-214ENST00000580003 LMBR1Q8WVP7 490 aa8.7□□□□□ -1.02
SS18-214ENST00000580003 FDXACB1Q9BRP7 624 aaPredicted RBP8.7□□□□□ -1.02
SS18-214ENST00000580003 PLA2G3Q9NZ20 509 aa8.7□□□□□ -1.02
SS18-214ENST00000580003 NCDNQ9UBB6 729 aa8.7□□□□□ -1.02
SS18-214ENST00000580003 EVLQ9UI08 416 aaPredicted RBP8.7□□□□□ -1.02
SS18-214ENST00000580003 EDARQ9UNE0 448 aa8.7□□□□□ -1.02
SS18-214ENST00000580003 CDY2AQ9Y6F7 541 aa8.7□□□□□ -1.02
SS18-214ENST00000580003 WASHC2AQ641Q2 1341 aa8.7□□□□□ -1.02
SS18-214ENST00000580003 COMTP21964 271 aa8.69□□□□□ -1.02
SS18-214ENST00000580003 BUD31P41223 144 aaPredicted RBP8.69□□□□□ -1.02
SS18-214ENST00000580003 GRM7Q14831 915 aa8.69□□□□□ -1.02
SS18-214ENST00000580003 CMIPQ8IY22 773 aa8.69□□□□□ -1.02
SS18-214ENST00000580003 DVL3Q92997 716 aaPredicted RBP8.69□□□□□ -1.02
SS18-214ENST00000580003 TMEM176AQ96HP8 235 aa8.69□□□□□ -1.02
SS18-214ENST00000580003 GPHA2Q96T91 129 aa8.69□□□□□ -1.02
SS18-214ENST00000580003 PUS7LQ9H0K6 701 aaKnown RBP8.69□□□□□ -1.02
SS18-214ENST00000580003 PRDM12Q9H4Q4 367 aa8.69□□□□□ -1.02
SS18-214ENST00000580003 AGO3Q9H9G7 860 aaKnown RBP8.69□□□□□ -1.02
SS18-214ENST00000580003 CD248Q9HCU0 757 aa8.69□□□□□ -1.02
SS18-214ENST00000580003 COL4A3BPQ9Y5P4 624 aa8.69□□□□□ -1.02
SS18-214ENST00000580003 ANKRD62A6NC57 917 aa8.68□□□□□ -1.02
SS18-214ENST00000580003 MTSS1O43312 755 aa8.68□□□□□ -1.02
SS18-214ENST00000580003 ALDH1A2O94788 518 aa8.68□□□□□ -1.02
SS18-214ENST00000580003 MTHFD2P13995 350 aa8.68□□□□□ -1.02
SS18-214ENST00000580003 CDK11BP21127 795 aaKnown RBP8.68□□□□□ -1.02
SS18-214ENST00000580003 SELENOPP49908 381 aa8.68□□□□□ -1.02
SS18-214ENST00000580003 ADAM17P78536 824 aa8.68□□□□□ -1.02
SS18-214ENST00000580003 AMPD3Q01432 767 aa8.68□□□□□ -1.02
SS18-214ENST00000580003 SAFB2Q14151 953 aaKnown RBP eCLIP8.68□□□□□ -1.02
SS18-214ENST00000580003 ZNF585AQ6P3V2 769 aa8.68□□□□□ -1.02
SS18-214ENST00000580003 SLC41A1Q8IVJ1 513 aa8.68□□□□□ -1.02
SS18-214ENST00000580003 FAM177A1Q8N128 213 aaPredicted RBP8.68□□□□□ -1.02
SS18-214ENST00000580003 PIK3C3Q8NEB9 887 aa8.68□□□□□ -1.02
SS18-214ENST00000580003 PAWRQ96IZ0 340 aaKnown RBP8.68□□□□□ -1.02
SS18-214ENST00000580003 KLC2Q9H0B6 622 aa8.68□□□□□ -1.02
SS18-214ENST00000580003 QRSL1Q9H0R6 528 aaKnown RBP8.68□□□□□ -1.02
SS18-214ENST00000580003 IL23AQ9NPF7 189 aa8.68□□□□□ -1.02
SS18-214ENST00000580003 DPP7Q9UHL4 492 aa8.68□□□□□ -1.02
SS18-214ENST00000580003 ADRB1P08588 477 aa8.67□□□□□ -1.02
SS18-214ENST00000580003 MSX2P35548 267 aaPredicted RBP8.67□□□□□ -1.02
SS18-214ENST00000580003 MRPS9P82933 396 aaKnown RBP8.67□□□□□ -1.02
SS18-214ENST00000580003 HHEXQ03014 270 aa8.67□□□□□ -1.02
SS18-214ENST00000580003 CNTD1Q8N815 330 aa8.67□□□□□ -1.02
SS18-214ENST00000580003 AUTS2Q8WXX7 1259 aa8.67□□□□□ -1.02
SS18-214ENST00000580003 CDK5RAP1Q96SZ6 601 aaKnown RBP8.67□□□□□ -1.02
SS18-214ENST00000580003 A0A1W2PR48 441 aa8.66□□□□□ -1.02
SS18-214ENST00000580003 UBE2QL1A1L167 161 aa8.66□□□□□ -1.02
SS18-214ENST00000580003 NRP1O14786 923 aa8.66□□□□□ -1.02
SS18-214ENST00000580003 ZNF20P17024 532 aa8.66□□□□□ -1.02
SS18-214ENST00000580003 IBSPP21815 317 aaPredicted RBP8.66□□□□□ -1.02
SS18-214ENST00000580003 NPEPPSP55786 919 aa8.66□□□□□ -1.02
SS18-214ENST00000580003 ADAM8P78325 824 aa8.66□□□□□ -1.02
SS18-214ENST00000580003 CDK17Q00537 523 aa8.66□□□□□ -1.02
SS18-214ENST00000580003 LCE1DQ5T752 114 aa8.66□□□□□ -1.02
SS18-214ENST00000580003 TAS1R1Q7RTX1 841 aa8.66□□□□□ -1.02
SS18-214ENST00000580003 ADGRE4PQ86SQ3 457 aa8.66□□□□□ -1.02
SS18-214ENST00000580003 CMTM4Q8IZR5 234 aa8.66□□□□□ -1.02
SS18-214ENST00000580003 D2HGDHQ8N465 521 aa8.66□□□□□ -1.02
SS18-214ENST00000580003 ARL8AQ96BM9 186 aa8.66□□□□□ -1.02
SS18-214ENST00000580003 FAM89AQ96GI7 184 aa8.66□□□□□ -1.02
SS18-214ENST00000580003 ORAI2Q96SN7 254 aa8.66□□□□□ -1.02
SS18-214ENST00000580003 TCF25Q9BQ70 676 aa8.66□□□□□ -1.02
SS18-214ENST00000580003 PCDH12Q9NPG4 1184 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms