RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 KLHL23Q8NBE8 558 aa11.28□□□□□ -0.6
SS18-207ENST00000577636 SPPL3Q8TCT6 385 aa11.28□□□□□ -0.6
SS18-207ENST00000577636 ERCC4Q92889 916 aaPredicted RBP11.28□□□□□ -0.6
SS18-207ENST00000577636 GLG1Q92896 1179 aa11.28□□□□□ -0.6
SS18-207ENST00000577636 ZNF689Q96CS4 500 aaPredicted RBP11.28□□□□□ -0.6
SS18-207ENST00000577636 ZBTB10Q96DT7 871 aa11.28□□□□□ -0.6
SS18-207ENST00000577636 PPP1R9BQ96SB3 815 aa11.28□□□□□ -0.6
SS18-207ENST00000577636 PLVAPQ9BX97 442 aa11.28□□□□□ -0.6
SS18-207ENST00000577636 NT5C3AQ9H0P0 336 aa11.28□□□□□ -0.6
SS18-207ENST00000577636 FAM49AQ9H0Q0 323 aaPredicted RBP11.28□□□□□ -0.6
SS18-207ENST00000577636 PKD2L1Q9P0L9 805 aa11.28□□□□□ -0.6
SS18-207ENST00000577636 STK17AQ9UEE5 414 aa11.28□□□□□ -0.6
SS18-207ENST00000577636 BARX2Q9UMQ3 279 aaPredicted RBP11.28□□□□□ -0.6
SS18-207ENST00000577636 PCDHGC5Q9Y5F6 944 aa11.28□□□□□ -0.6
SS18-207ENST00000577636 GOLGA6L6A8MZA4 724 aa11.27□□□□□ -0.61
SS18-207ENST00000577636 PER2O15055 1255 aa11.27□□□□□ -0.61
SS18-207ENST00000577636 STAM2O75886 525 aa11.27□□□□□ -0.61
SS18-207ENST00000577636 ADCY5O95622 1261 aa11.27□□□□□ -0.61
SS18-207ENST00000577636 ITGB1P05556 798 aa11.27□□□□□ -0.61
SS18-207ENST00000577636 CIITAP33076 1130 aa11.27□□□□□ -0.61
SS18-207ENST00000577636 SETQ01105 290 aaPredicted RBP11.27□□□□□ -0.61
SS18-207ENST00000577636 TMEM62Q0P6H9 643 aa11.27□□□□□ -0.61
SS18-207ENST00000577636 GRIK4Q16099 956 aa11.27□□□□□ -0.61
SS18-207ENST00000577636 E2F4Q16254 413 aa11.27□□□□□ -0.61
SS18-207ENST00000577636 DPCR1Q3MIW9 517 aa11.27□□□□□ -0.61
SS18-207ENST00000577636 FBXO47Q5MNV8 452 aa11.27□□□□□ -0.61
SS18-207ENST00000577636 TAF2Q6P1X5 1199 aa11.27□□□□□ -0.61
SS18-207ENST00000577636 C11orf57Q6ZUT1 292 aaPredicted RBP11.27□□□□□ -0.61
SS18-207ENST00000577636 BMP8AQ7Z5Y6 402 aa11.27□□□□□ -0.61
SS18-207ENST00000577636 RTN4RL1Q86UN2 441 aaPredicted RBP11.27□□□□□ -0.61
SS18-207ENST00000577636 SNX29Q8TEQ0 813 aa11.27□□□□□ -0.61
SS18-207ENST00000577636 MSLNLQ96KJ4 702 aa11.27□□□□□ -0.61
SS18-207ENST00000577636 MBOAT7Q96N66 472 aa11.27□□□□□ -0.61
SS18-207ENST00000577636 INPP4AQ96PE3 977 aaPredicted RBP11.27□□□□□ -0.61
SS18-207ENST00000577636 TLE6Q9H808 572 aa11.27□□□□□ -0.61
SS18-207ENST00000577636 AGO3Q9H9G7 860 aaKnown RBP11.27□□□□□ -0.61
SS18-207ENST00000577636 CLEC1BQ9P126 229 aa11.27□□□□□ -0.61
SS18-207ENST00000577636 LRFN2Q9ULH4 789 aa11.27□□□□□ -0.61
SS18-207ENST00000577636 PIEZO1Q92508 2521 aa11.26□□□□□ -0.61
SS18-207ENST00000577636 A0A087X0B3 334 aa11.26□□□□□ -0.61
SS18-207ENST00000577636 PP2D1A8MPX8 630 aa11.26□□□□□ -0.61
SS18-207ENST00000577636 IKBKBO14920 756 aa11.26□□□□□ -0.61
SS18-207ENST00000577636 ATP9AO75110 1047 aa11.26□□□□□ -0.61
SS18-207ENST00000577636 EYA4O95677 639 aa11.26□□□□□ -0.61
SS18-207ENST00000577636 PLCG1P19174 1290 aa11.26□□□□□ -0.61
SS18-207ENST00000577636 CDC25AP30304 524 aa11.26□□□□□ -0.61
SS18-207ENST00000577636 GATMP50440 423 aa11.26□□□□□ -0.61
SS18-207ENST00000577636 MYL5Q02045 173 aa11.26□□□□□ -0.61
SS18-207ENST00000577636 TCF15Q12870 199 aa11.26□□□□□ -0.61
SS18-207ENST00000577636 STIM1Q13586 685 aa11.26□□□□□ -0.61
SS18-207ENST00000577636 MORC3Q14149 939 aa11.26□□□□□ -0.61
SS18-207ENST00000577636 ISM2Q6H9L7 571 aa11.26□□□□□ -0.61
SS18-207ENST00000577636 PDXDC2PQ6P474 469 aa11.26□□□□□ -0.61
SS18-207ENST00000577636 TSHZ1Q6ZSZ6 1077 aa11.26□□□□□ -0.61
SS18-207ENST00000577636 SV2BQ7L1I2 683 aa11.26□□□□□ -0.61
SS18-207ENST00000577636 AOPEPQ8N6M6 819 aa11.26□□□□□ -0.61
SS18-207ENST00000577636 EFHBQ8N7U6 833 aa11.26□□□□□ -0.61
SS18-207ENST00000577636 SEPT1Q8WYJ6 367 aa11.26□□□□□ -0.61
SS18-207ENST00000577636 TRIM5Q9C035 493 aa11.26□□□□□ -0.61
SS18-207ENST00000577636 RC3H2Q9HBD1 1191 aaKnown RBP11.26□□□□□ -0.61
SS18-207ENST00000577636 KCNMB3Q9NPA1 279 aa11.26□□□□□ -0.61
SS18-207ENST00000577636 BMP2KQ9NSY1 1161 aaPredicted RBP11.26□□□□□ -0.61
SS18-207ENST00000577636 TCEAL9Q9UHQ7 104 aa11.26□□□□□ -0.61
SS18-207ENST00000577636 MAN1B1Q9UKM7 699 aa11.26□□□□□ -0.61
SS18-207ENST00000577636 USP15Q9Y4E8 981 aaPredicted RBP11.26□□□□□ -0.61
SS18-207ENST00000577636 WDFY4Q6ZS81 3184 aa11.25□□□□□ -0.61
SS18-207ENST00000577636 LOC730098B7Z3J9 87 aa11.25□□□□□ -0.61
SS18-207ENST00000577636 M0QZ92 97 aa11.25□□□□□ -0.61
SS18-207ENST00000577636 GFRA3O60609 400 aa11.25□□□□□ -0.61
SS18-207ENST00000577636 STAG3L1P0CL83 205 aa11.25□□□□□ -0.61
SS18-207ENST00000577636 SP100P23497 879 aaPredicted RBP11.25□□□□□ -0.61
SS18-207ENST00000577636 CCT6AP40227 531 aaKnown RBP11.25□□□□□ -0.61
SS18-207ENST00000577636 SARSP49591 514 aaKnown RBP11.25□□□□□ -0.61
SS18-207ENST00000577636 MRPS6P82932 125 aaKnown RBP11.25□□□□□ -0.61
SS18-207ENST00000577636 RBM10P98175 930 aaKnown RBP11.25□□□□□ -0.61
SS18-207ENST00000577636 DPYDQ12882 1025 aa11.25□□□□□ -0.61
SS18-207ENST00000577636 NFX1Q12986 1120 aaKnown RBP11.25□□□□□ -0.61
SS18-207ENST00000577636 IQCB1Q15051 598 aa11.25□□□□□ -0.61
SS18-207ENST00000577636 XRRA1Q6P2D8 792 aa11.25□□□□□ -0.61
SS18-207ENST00000577636 ZBTB33Q86T24 672 aa11.25□□□□□ -0.61
SS18-207ENST00000577636 PLA2G4DQ86XP0 818 aa11.25□□□□□ -0.61
SS18-207ENST00000577636 NPAS4Q8IUM7 802 aa11.25□□□□□ -0.61
SS18-207ENST00000577636 DRC7Q8IY82 874 aa11.25□□□□□ -0.61
SS18-207ENST00000577636 GRAMD1CQ8IYS0 662 aa11.25□□□□□ -0.61
SS18-207ENST00000577636 CMTR2Q8IYT2 770 aaKnown RBP11.25□□□□□ -0.61
SS18-207ENST00000577636 FBXL6Q8N531 539 aa11.25□□□□□ -0.61
SS18-207ENST00000577636 KCTD17Q8N5Z5 321 aa11.25□□□□□ -0.61
SS18-207ENST00000577636 GIMAP8Q8ND71 665 aaPredicted RBP11.25□□□□□ -0.61
SS18-207ENST00000577636 SPATA20Q8TB22 786 aa11.25□□□□□ -0.61
SS18-207ENST00000577636 CRYGNQ8WXF5 182 aa11.25□□□□□ -0.61
SS18-207ENST00000577636 LINC01599Q8WXQ3 324 aa11.25□□□□□ -0.61
SS18-207ENST00000577636 ATOH1Q92858 354 aaPredicted RBP11.25□□□□□ -0.61
SS18-207ENST00000577636 P2RX5Q93086 422 aa11.25□□□□□ -0.61
SS18-207ENST00000577636 PLIN2Q99541 437 aa11.25□□□□□ -0.61
SS18-207ENST00000577636 PRRX2Q99811 253 aa11.25□□□□□ -0.61
SS18-207ENST00000577636 SENP7Q9BQF6 1050 aa11.25□□□□□ -0.61
SS18-207ENST00000577636 APOL5Q9BWW9 433 aa11.25□□□□□ -0.61
SS18-207ENST00000577636 ERAP1Q9NZ08 941 aa11.25□□□□□ -0.61
SS18-207ENST00000577636 NLRC5Q86WI3 1866 aa11.25□□□□□ -0.61
SS18-207ENST00000577636 GSTTP1A0A1W2PQM5 241 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms