RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 H0YGN5 161 aa15.61■□□□□ 0.09
VPS35-210ENST00000568784 STK33Q9BYT3 514 aa15.61■□□□□ 0.09
VPS35-210ENST00000568784 HOMER3Q9NSC5 361 aa15.61■□□□□ 0.09
VPS35-210ENST00000568784 SUFUQ9UMX1 484 aa15.61■□□□□ 0.09
VPS35-210ENST00000568784 CEP83Q9Y592 693 aa15.61■□□□□ 0.09
VPS35-210ENST00000568784 PCDHA2Q9Y5H9 948 aa15.61■□□□□ 0.09
VPS35-210ENST00000568784 NFS1Q9Y697 457 aa15.61■□□□□ 0.09
VPS35-210ENST00000568784 A0A1B0GUA9 196 aa15.6■□□□□ 0.09
VPS35-210ENST00000568784 THAP12O43422 761 aa15.6■□□□□ 0.09
VPS35-210ENST00000568784 NEFHP12036 1026 aa15.6■□□□□ 0.09
VPS35-210ENST00000568784 SHMT1P34896 483 aa15.6■□□□□ 0.09
VPS35-210ENST00000568784 RPL21P46778 160 aaKnown RBP15.6■□□□□ 0.09
VPS35-210ENST00000568784 MAPK7Q13164 816 aa15.6■□□□□ 0.09
VPS35-210ENST00000568784 STMN4Q9H169 189 aaPredicted RBP15.6■□□□□ 0.09
VPS35-210ENST00000568784 GLT8D2Q9H1C3 349 aa15.6■□□□□ 0.09
VPS35-210ENST00000568784 TRAF3IP3Q9Y228 551 aa15.6■□□□□ 0.09
VPS35-210ENST00000568784 PITPNM2Q9BZ72 1349 aa15.6■□□□□ 0.09
VPS35-210ENST00000568784 DRD4P21917 467 aa15.6■□□□□ 0.09
VPS35-210ENST00000568784 ADCY8P40145 1251 aa15.6■□□□□ 0.09
VPS35-210ENST00000568784 PPP1R18Q6NYC8 613 aa15.6■□□□□ 0.09
VPS35-210ENST00000568784 MICAL1Q8TDZ2 1067 aa15.6■□□□□ 0.09
VPS35-210ENST00000568784 ATG4AQ8WYN0 398 aa15.6■□□□□ 0.09
VPS35-210ENST00000568784 FAM129AQ9BZQ8 928 aa15.6■□□□□ 0.09
VPS35-210ENST00000568784 NOD2Q9HC29 1040 aa15.6■□□□□ 0.09
VPS35-210ENST00000568784 HOMER2Q9NSB8 354 aa15.6■□□□□ 0.09
VPS35-210ENST00000568784 ABCF3Q9NUQ8 709 aa15.6■□□□□ 0.09
VPS35-210ENST00000568784 CLDN3O15551 220 aa15.6■□□□□ 0.09
VPS35-210ENST00000568784 CALCAP01258 141 aa15.6■□□□□ 0.09
VPS35-210ENST00000568784 SPATA31C1P0DKV0 1188 aa15.6■□□□□ 0.09
VPS35-210ENST00000568784 SGO2Q562F6 1265 aa15.6■□□□□ 0.09
VPS35-210ENST00000568784 CDC42EP5Q6NZY7 148 aa15.6■□□□□ 0.09
VPS35-210ENST00000568784 SRRM1Q8IYB3 904 aaKnown RBP15.6■□□□□ 0.09
VPS35-210ENST00000568784 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.6■□□□□ 0.09
VPS35-210ENST00000568784 RNF25Q96BH1 459 aaPredicted RBP15.6■□□□□ 0.09
VPS35-210ENST00000568784 DDX23Q9BUQ8 820 aaKnown RBP15.6■□□□□ 0.09
VPS35-210ENST00000568784 APEX2Q9UBZ4 518 aa15.6■□□□□ 0.09
VPS35-210ENST00000568784 TMEM59LQ9UK28 342 aa15.6■□□□□ 0.09
VPS35-210ENST00000568784 GH2P01242 217 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 TMEM253P0C7T8 217 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 POLD1P28340 1107 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 C6orf118Q5T5N4 469 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 TRIM68Q6AZZ1 485 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 ARMC9Q7Z3E5 817 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 AGPAT1Q99943 283 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 ANKRD62A6NC57 917 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 CYP26A1O43174 497 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 SLC8A1P32418 973 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 HOXD13P35453 343 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 PTENP60484 403 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 YTHDF3Q7Z739 585 aaKnown RBP15.59■□□□□ 0.09
VPS35-210ENST00000568784 STAMBPL1Q96FJ0 436 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 NKIRAS1Q9NYS0 192 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 PASKQ96RG2 1323 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 ROBO3Q96MS0 1386 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 TCRBV7S2A1N4TA0A589 114 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 ECEL1O95672 775 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 ARHGAP27Q6ZUM4 889 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 MTFR1LQ9H019 292 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 CTNNAL1Q9UBT7 734 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 BCORQ6W2J9 1755 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 SORBS3O60504 671 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 UBOX5O94941 541 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 EYA4O95677 639 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 SYDE2Q5VT97 1194 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 TRPM8Q7Z2W7 1104 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 VSIG1Q86XK7 387 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 CPXCR1Q8N123 301 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 HES6Q96HZ4 224 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 CARD9Q9H257 536 aa15.59■□□□□ 0.09
VPS35-210ENST00000568784 GOLGB1Q14789 3259 aaKnown RBP15.58■□□□□ 0.09
VPS35-210ENST00000568784 TGFB1I1O43294 461 aa15.58■□□□□ 0.08
VPS35-210ENST00000568784 ADCY2Q08462 1091 aa15.58■□□□□ 0.08
VPS35-210ENST00000568784 KYNUQ16719 465 aa15.58■□□□□ 0.08
VPS35-210ENST00000568784 ABCB5Q2M3G0 1257 aa15.58■□□□□ 0.08
VPS35-210ENST00000568784 DCAF12L1Q5VU92 463 aa15.58■□□□□ 0.08
VPS35-210ENST00000568784 EP400NLQ6ZTU2 488 aa15.58■□□□□ 0.08
VPS35-210ENST00000568784 FAM84AQ96KN4 292 aa15.58■□□□□ 0.08
VPS35-210ENST00000568784 PWWP2AQ96N64 755 aa15.58■□□□□ 0.08
VPS35-210ENST00000568784 NUP85Q9BW27 656 aa15.58■□□□□ 0.08
VPS35-210ENST00000568784 KCNMB3Q9NPA1 279 aa15.58■□□□□ 0.08
VPS35-210ENST00000568784 MEIS2O14770 477 aa15.58■□□□□ 0.08
VPS35-210ENST00000568784 DLG4P78352 724 aa15.58■□□□□ 0.08
VPS35-210ENST00000568784 DRP2Q13474 957 aa15.58■□□□□ 0.08
VPS35-210ENST00000568784 PRCCQ92733 491 aaPredicted RBP15.58■□□□□ 0.08
VPS35-210ENST00000568784 ZNF577Q9BSK1 485 aa15.58■□□□□ 0.08
VPS35-210ENST00000568784 SIX2Q9NPC8 291 aa15.58■□□□□ 0.08
VPS35-210ENST00000568784 COG5Q9UP83 839 aa15.58■□□□□ 0.08
VPS35-210ENST00000568784 CREB1P16220 341 aa15.58■□□□□ 0.08
VPS35-210ENST00000568784 PRKCIP41743 596 aa15.58■□□□□ 0.08
VPS35-210ENST00000568784 GPC5P78333 572 aa15.58■□□□□ 0.08
VPS35-210ENST00000568784 ACCSLQ4AC99 568 aa15.58■□□□□ 0.08
VPS35-210ENST00000568784 ECT2Q9H8V3 914 aa15.58■□□□□ 0.08
VPS35-210ENST00000568784 MYH14Q7Z406 1995 aaKnown RBP15.57■□□□□ 0.08
VPS35-210ENST00000568784 DOCK2Q92608 1830 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 SYNGAP1Q96PV0 1343 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 TMEM120BA0PK00 339 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 RASSF9O75901 435 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 SUN1O94901 812 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 NDUFB10O96000 172 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 PYGMP11217 842 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms