RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 SV2BQ7L1I2 683 aa10.83□□□□□ -0.68
CLK3-208ENST00000562626 ZNF410Q86VK4 478 aa10.83□□□□□ -0.68
CLK3-208ENST00000562626 CDR2LQ86X02 465 aaPredicted RBP10.83□□□□□ -0.68
CLK3-208ENST00000562626 IFNLR1Q8IU57 520 aaPredicted RBP10.83□□□□□ -0.68
CLK3-208ENST00000562626 FMR1NBQ8N0W7 255 aaPredicted RBP10.83□□□□□ -0.68
CLK3-208ENST00000562626 GLIS3Q8NEA6 775 aa10.83□□□□□ -0.68
CLK3-208ENST00000562626 DDX12PQ92771 950 aa10.83□□□□□ -0.68
CLK3-208ENST00000562626 PAGE5Q96GU1 130 aa10.83□□□□□ -0.68
CLK3-208ENST00000562626 SCLT1Q96NL6 688 aa10.83□□□□□ -0.68
CLK3-208ENST00000562626 TRIM9Q9C026 710 aa10.83□□□□□ -0.68
CLK3-208ENST00000562626 IKZF4Q9H2S9 585 aa10.83□□□□□ -0.68
CLK3-208ENST00000562626 PRDM6Q9NQX0 595 aa10.83□□□□□ -0.68
CLK3-208ENST00000562626 LMBRD1Q9NUN5 540 aa10.83□□□□□ -0.68
CLK3-208ENST00000562626 FRMD3A2A2Y4 597 aa10.82□□□□□ -0.68
CLK3-208ENST00000562626 SLC16A4O15374 487 aa10.82□□□□□ -0.68
CLK3-208ENST00000562626 ASAP2O43150 1006 aa10.82□□□□□ -0.68
CLK3-208ENST00000562626 KLRC4O43908 158 aa10.82□□□□□ -0.68
CLK3-208ENST00000562626 TSPAN1O60635 241 aa10.82□□□□□ -0.68
CLK3-208ENST00000562626 FGBP02675 491 aa10.82□□□□□ -0.68
CLK3-208ENST00000562626 RPLP2P05387 115 aaKnown RBP10.82□□□□□ -0.68
CLK3-208ENST00000562626 SLFN14P0C7P3 912 aa10.82□□□□□ -0.68
CLK3-208ENST00000562626 NMT1P30419 496 aaKnown RBP10.82□□□□□ -0.68
CLK3-208ENST00000562626 CASP5P51878 434 aa10.82□□□□□ -0.68
CLK3-208ENST00000562626 WDR5P61964 334 aaKnown RBP10.82□□□□□ -0.68
CLK3-208ENST00000562626 PAK2Q13177 524 aa10.82□□□□□ -0.68
CLK3-208ENST00000562626 MXD4Q14582 209 aaPredicted RBP10.82□□□□□ -0.68
CLK3-208ENST00000562626 PSRC1Q6PGN9 363 aaPredicted RBP10.82□□□□□ -0.68
CLK3-208ENST00000562626 KRBA2Q6ZNG9 492 aa10.82□□□□□ -0.68
CLK3-208ENST00000562626 SFR1Q86XK3 245 aa10.82□□□□□ -0.68
CLK3-208ENST00000562626 EXOC8Q8IYI6 725 aa10.82□□□□□ -0.68
CLK3-208ENST00000562626 IQUBQ8NA54 791 aa10.82□□□□□ -0.68
CLK3-208ENST00000562626 HERVK_113Q902F9 699 aa10.82□□□□□ -0.68
CLK3-208ENST00000562626 SEPT8Q92599 483 aa10.82□□□□□ -0.68
CLK3-208ENST00000562626 KIFAP3Q92845 792 aa10.82□□□□□ -0.68
CLK3-208ENST00000562626 ERCC4Q92889 916 aaPredicted RBP10.82□□□□□ -0.68
CLK3-208ENST00000562626 CPB2Q96IY4 423 aa10.82□□□□□ -0.68
CLK3-208ENST00000562626 GCOM2Q9BZD3 368 aaPredicted RBP10.82□□□□□ -0.68
CLK3-208ENST00000562626 TNMDQ9H2S6 317 aa10.82□□□□□ -0.68
CLK3-208ENST00000562626 KCND2Q9NZV8 630 aa10.82□□□□□ -0.68
CLK3-208ENST00000562626 TBC1D7Q9P0N9 293 aa10.82□□□□□ -0.68
CLK3-208ENST00000562626 SQORQ9Y6N5 450 aa10.82□□□□□ -0.68
CLK3-208ENST00000562626 CHD9Q3L8U1 2897 aa10.81□□□□□ -0.68
CLK3-208ENST00000562626 CCDC169A6NNP5 214 aa10.81□□□□□ -0.68
CLK3-208ENST00000562626 MEIS3P2A8K0S8 358 aa10.81□□□□□ -0.68
CLK3-208ENST00000562626 INO80B-WBP1J3KQ70 363 aa10.81□□□□□ -0.68
CLK3-208ENST00000562626 ENPP3O14638 875 aa10.81□□□□□ -0.68
CLK3-208ENST00000562626 PARNO95453 639 aaKnown RBP10.81□□□□□ -0.68
CLK3-208ENST00000562626 KRT18P05783 430 aaKnown RBP10.81□□□□□ -0.68
CLK3-208ENST00000562626 PLS3P13797 630 aa10.81□□□□□ -0.68
CLK3-208ENST00000562626 HOXA11P31270 313 aaPredicted RBP10.81□□□□□ -0.68
CLK3-208ENST00000562626 NAMPTP43490 491 aa10.81□□□□□ -0.68
CLK3-208ENST00000562626 PHKA2P46019 1235 aa10.81□□□□□ -0.68
CLK3-208ENST00000562626 GATMP50440 423 aa10.81□□□□□ -0.68
CLK3-208ENST00000562626 NCKAP1LP55160 1127 aa10.81□□□□□ -0.68
CLK3-208ENST00000562626 TFDP1Q14186 410 aa10.81□□□□□ -0.68
CLK3-208ENST00000562626 ZC2HC1CQ53FD0 456 aaPredicted RBP10.81□□□□□ -0.68
CLK3-208ENST00000562626 UBXN11Q5T124 520 aa10.81□□□□□ -0.68
CLK3-208ENST00000562626 NT5DC1Q5TFE4 455 aa10.81□□□□□ -0.68
CLK3-208ENST00000562626 EEF1DP3Q658K8 133 aa10.81□□□□□ -0.68
CLK3-208ENST00000562626 SRGAP1Q7Z6B7 1085 aa10.81□□□□□ -0.68
CLK3-208ENST00000562626 RPUSD2Q8IZ73 545 aaKnown RBP10.81□□□□□ -0.68
CLK3-208ENST00000562626 CRIPAKQ8N1N5 446 aa10.81□□□□□ -0.68
CLK3-208ENST00000562626 TMEM161BQ8NDZ6 487 aa10.81□□□□□ -0.68
CLK3-208ENST00000562626 DRC1Q96MC2 740 aa10.81□□□□□ -0.68
CLK3-208ENST00000562626 C7orf25Q9BPX7 421 aa10.81□□□□□ -0.68
CLK3-208ENST00000562626 NFKBIZQ9BYH8 718 aa10.81□□□□□ -0.68
CLK3-208ENST00000562626 INO80BQ9C086 356 aaPredicted RBP10.81□□□□□ -0.68
CLK3-208ENST00000562626 CUEDC2Q9H467 287 aa10.81□□□□□ -0.68
CLK3-208ENST00000562626 ZHX3Q9H4I2 956 aa10.81□□□□□ -0.68
CLK3-208ENST00000562626 AGPAT5Q9NUQ2 364 aa10.81□□□□□ -0.68
CLK3-208ENST00000562626 ARHGAP28Q9P2N2 729 aa10.81□□□□□ -0.68
CLK3-208ENST00000562626 ODF2LQ9ULJ1 636 aa10.81□□□□□ -0.68
CLK3-208ENST00000562626 LAMA3Q16787 3333 aa10.81□□□□□ -0.68
CLK3-208ENST00000562626 ZBBXA8MT70 800 aa10.8□□□□□ -0.68
CLK3-208ENST00000562626 SOX1O00570 391 aaPredicted RBP10.8□□□□□ -0.68
CLK3-208ENST00000562626 PPP1R37O75864 691 aa10.8□□□□□ -0.68
CLK3-208ENST00000562626 FAM13AO94988 1023 aa10.8□□□□□ -0.68
CLK3-208ENST00000562626 ARHGEF15O94989 841 aa10.8□□□□□ -0.68
CLK3-208ENST00000562626 PFKMP08237 780 aa10.8□□□□□ -0.68
CLK3-208ENST00000562626 MAPTP10636 758 aaKnown RBP10.8□□□□□ -0.68
CLK3-208ENST00000562626 IDEP14735 1019 aa10.8□□□□□ -0.68
CLK3-208ENST00000562626 ATF7P17544 494 aaPredicted RBP10.8□□□□□ -0.68
CLK3-208ENST00000562626 ARF4P18085 180 aaPredicted RBP10.8□□□□□ -0.68
CLK3-208ENST00000562626 IBSPP21815 317 aaPredicted RBP10.8□□□□□ -0.68
CLK3-208ENST00000562626 RABGGTBP53611 331 aa10.8□□□□□ -0.68
CLK3-208ENST00000562626 FAM160A1Q05DH4 1040 aa10.8□□□□□ -0.68
CLK3-208ENST00000562626 POU5F1BQ06416 359 aa10.8□□□□□ -0.68
CLK3-208ENST00000562626 EHHADHQ08426 723 aa10.8□□□□□ -0.68
CLK3-208ENST00000562626 KCNA1Q09470 495 aa10.8□□□□□ -0.68
CLK3-208ENST00000562626 COASYQ13057 564 aa10.8□□□□□ -0.68
CLK3-208ENST00000562626 PNOCQ13519 176 aa10.8□□□□□ -0.68
CLK3-208ENST00000562626 ODR4Q5SWX8 454 aa10.8□□□□□ -0.68
CLK3-208ENST00000562626 CNNM4Q6P4Q7 775 aa10.8□□□□□ -0.68
CLK3-208ENST00000562626 CATSPER4Q7RTX7 472 aa10.8□□□□□ -0.68
CLK3-208ENST00000562626 SPRED2Q7Z698 418 aa10.8□□□□□ -0.68
CLK3-208ENST00000562626 TDHQ8IZJ6 230 aa10.8□□□□□ -0.68
CLK3-208ENST00000562626 MYCT1Q8N699 235 aa10.8□□□□□ -0.68
CLK3-208ENST00000562626 USP38Q8NB14 1042 aa10.8□□□□□ -0.68
CLK3-208ENST00000562626 DEPTORQ8TB45 409 aa10.8□□□□□ -0.68
CLK3-208ENST00000562626 SPIRE2Q8WWL2 714 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms